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Akman F, Demirpolat A, Kazachenko AS, Kazachenko AS, Issaoui N, Al-Dossary O. Molecular Structure, Electronic Properties, Reactivity (ELF, LOL, and Fukui), and NCI-RDG Studies of the Binary Mixture of Water and Essential Oil of Phlomis bruguieri. Molecules 2023; 28:molecules28062684. [PMID: 36985656 PMCID: PMC10056484 DOI: 10.3390/molecules28062684] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Revised: 02/28/2023] [Accepted: 03/06/2023] [Indexed: 03/19/2023] Open
Abstract
Essential oils are volatile oil-like liquids with a characteristic strong smell and taste. They are formed in plants and are then extracted. Essential oils have extremely strong physiological and pharmacological properties, which are used in the medicine, cosmetics, and food industries. In this study, the molecules caryophyllene oxide, β-pinene, 1,8-cineol, α-cubebene, and β-caryophyllene, which are the molecules with the highest contents in the essential oil of the plant mentioned in the title, were selected and theoretical calculations describing their interactions with water were performed. Because oil–water mixtures are very important in biology and industry and are ubiquitous in nature, quantum chemical calculations for binary mixtures of water with caryophyllene oxide, β-pinene, 1,8-cineol, α-cubebene, and β-caryophyllene were performed using the density functional theory (DFT)/B3LYP method with a basis of 6–31 G (d, p). Molecular structures, HOMO–LUMO energies, electronic properties, reactivity (ELF, LOL, and Fukui), and NCI-RDG and molecular electrostatic potential (MEP) on surfaces of the main components of Phlomis bruguieri Desf. essential oil were calculated and described.
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Affiliation(s)
- Feride Akman
- Vocational School of Food, Agriculture and Livestock, University of Bingöl, Bingöl 12000, Turkey
- Correspondence: (F.A.); or (A.S.K.)
| | - Azize Demirpolat
- Vocational School of Food, Agriculture and Livestock, University of Bingöl, Bingöl 12000, Turkey
| | - Aleksandr S. Kazachenko
- School of Non-Ferrous Metals and Materials Science, Siberian Federal University, Pr. Svobodny 79, 660041 Krasnoyarsk, Russia
- Siberian Branch, FRC “Krasnoyarsk Scientific Center”, Institute of Chemistry and Chemical Technology, Russian Academy of Sciences, Akademgorodok 50, Bld. 24, 660036 Krasnoyarsk, Russia
- Department of Biological Chemistry with Courses in Medical, Pharmaceutical and Toxicological Chemistry, Krasnoyarsk State Medical University, St. Partizan Zheleznyak, Bld. 1, 660022 Krasnoyarsk, Russia
- Correspondence: (F.A.); or (A.S.K.)
| | - Anna S. Kazachenko
- School of Non-Ferrous Metals and Materials Science, Siberian Federal University, Pr. Svobodny 79, 660041 Krasnoyarsk, Russia
| | - Noureddine Issaoui
- Laboratory of Quantum and Statistical Physics, LR18ES18, Faculty of Sciences, University of Monastir, Monastir 5079, Tunisia
| | - Omar Al-Dossary
- Departement of Physics and Astronomy, College of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia
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Effect of green solvents physical, chemical, biological and bonding nature on 5-acetyl-thiophene-2-carboxylic acid by DFT and TD-DFT approach – An antiviral agent. J INDIAN CHEM SOC 2022. [DOI: 10.1016/j.jics.2022.100867] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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Kubaib A, Mohamed Imran P, Aathif Basha A. Applications of the Vienna Ab Initio Simulation Package, DFT and molecular interaction studies for investigating the electrochemical stability and solvation performance of non-aqueous NaMF6 electrolytes for sodium-ion batteries. COMPUT THEOR CHEM 2022. [DOI: 10.1016/j.comptc.2022.113934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Demirpolat A, Akman F, Kazachenko AS. An Experimental and Theoretical Study on Essential Oil of Aethionema sancakense: Characterization, Molecular Properties and RDG Analysis. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27186129. [PMID: 36144861 PMCID: PMC9504168 DOI: 10.3390/molecules27186129] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/05/2022] [Revised: 09/09/2022] [Accepted: 09/15/2022] [Indexed: 01/18/2023]
Abstract
This study aims to experimentally and theoretically examine the plant Aethionema sancakense, which was determined as a new species and whose essential oil and fatty acid compositions were characterized by GC/GC-MS technique. Linoleic acid (23.1%), α-humulene (19.8%), camphene (13.9%), and heptanal (9.7%) were found to be the major essential oil components of A. sancakense aerial part structures. The quantum chemical calculations of these four molecules that are very important to this plant were performed using the density functional method (DFT)/B3LYP with the 6-31 G (d, p) basis set in the ground state for the gas phase. The molecular structures, HOMO-LUMO energies, electronic properties, Fukui functions, and molecular electrostatic potential (MEP) surfaces of the major constituents of Aethionema sancakense essential oil were calculated and interpreted. Finally, the RDG-NCI analysis of these molecules was performed to determine the non-covalent interactions present within the molecules.
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Affiliation(s)
- Azize Demirpolat
- Vocational School of Food, Agriculture and Livestock, University of Bingöl, Bingöl 12000, Turkey
- Correspondence: (A.D.); (F.A.); (A.S.K.)
| | - Feride Akman
- Vocational School of Food, Agriculture and Livestock, University of Bingöl, Bingöl 12000, Turkey
- Correspondence: (A.D.); (F.A.); (A.S.K.)
| | - Aleksandr S. Kazachenko
- Krasnoyarsk Scientific Center, Department of Chemistry of Natural Organic Raw Materials, Institute of Chemistry and Chemical Technology, Siberian Branch, Russian Academy of Sciences, Akademgorodok, 50, bld. 24, Krasnoyarsk 660036, Russia
- Department of Non-Ferrous Metals and Materials Science, Siberian Federal University, pr. Svobodny 79, Krasnoyarsk 660041, Russia
- Department of Biological Chemistry with Elements of Pharmaceutical, Medical and Toxicological Chemistry, Krasnoyarsk State Medical University of the Ministry of Healthcare of the Russian Federation, st. Partizan Zheleznyak, bld. 1, Krasnoyarsk 660022, Russia
- Correspondence: (A.D.); (F.A.); (A.S.K.)
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