Using artificial neural networks to develop molecular mechanics parameters for the modelling of metalloporphyrins. III. Five coordinate Zn(II) porphyrins and the metalloprophyrins of the early 3d metals

Photophysical characterization of tetrahydroxyphenyl porphyrin Zn(II) and V(IV) complexes: experimental and DFT study

Photodynamic therapy (PDT) is a promising technique for the treatment of various diseases. In this sense, the singlet oxygen quantum yield (Φ∆) is a physical-chemical property that allows to stablish the applicability of a potential photosensitizers (PS) as a drug for PDT. In the herein report, the Φ∆ of three photosensitizers was determined: metal-free tetrahydroxyphenyl porphyrin (THPP), THPP-Zn and the THPP-V metal complexes. Their biological application was also evaluated. Therefore, the in vitro study was carried out to assess their biological activity against Escherichia coli. The metal-porphyrin complexes exhibited highest activities against the bacterial strain Escherichia coli. at the highest concentration (175 μg/mL) and show better activity than the free base ligand (salts and blank solution). Results indicated a relation between Φ∆ and the inhibitory activity against Escherichia coli, thus, whereas higher is the Φ∆, higher is the inhibitory activity. The values of the Φ∆ and the inhibitory activity follows the tendency THPP-Zn > THPP > THPP-V. Furthermore, quantum chemical calculations allowed to gain deep insight into the electronic and optical properties of THPP-Zn macrocycle, which let to verify the most probable energy transfer pathway involved in the singlet oxygen generation.

Structural Survey of Zinc Containing Proteins and the Development of the Zinc AMBER Force Field (ZAFF)

Currently the Protein Data Bank (PDB) contains over 18,000 structures that contain a metal ion including Na, Mg, K, Ca, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, Pd, Ag, Cd, Ir, Pt, Au, and Hg. In general, carrying out classical molecular dynamics (MD) simulations of metalloproteins is a convoluted and time consuming process. Herein, we describe MCPB (Metal Center Parameter Builder), which allows one, to conveniently and rapidly incorporate metal ions using the bonded plus electrostatics model (Hoops et al., J. Am. Chem. Soc. 1991, 113, 8262-8270) into the AMBER Force Field (FF). MCPB was used to develop a Zinc FF, ZAFF, which is compatible with the existing AMBER FFs. The PDB was mined for all Zn containing structures with most being tetrahedrally bound. The most abundant primary shell ligand combinations were extracted and FFs were created. These include Zn bound to CCCC, CCCH, CCHH, CHHH, HHHH, HHHO, HHOO, HOOO, HHHD, and HHDD (O = water and the remaining are 1 letter amino acid codes). Bond and angle force constants and RESP charges were obtained from B3LYP/6-31G* calculations of model structures from the various primary shell combinations. MCPB and ZAFF can be used to create FFs for MD simulations of metalloproteins to study enzyme catalysis, drug design and metalloprotein crystal refinement.

Realizing metalloporphyrin functionalization of 4-vinylpyridine copolymer via axial coordination reaction

Cobalt tetra(para-chlorophenyl)porphyrin ( CoTCPP ) and zinc tetraphenyl porphyrin ( ZnTPP ) were linked on the side chains of the copolymer of 4-vinylpyridine (4VP) and styrene (St), P(4VP-co-St), via axial coordination reactions, respectively, and the metalloporphyrin-functionalized macromolecules, CoTCPP -P(4VP-co-St) and ZnTPP -P(4VP-co-St), were prepared. Their chemical structures were characterized by FTIR and 1H NMR. The spectral properties of the two macromolecular axial coordination complexes were mainly studied, and their photophysical behavior were discussed in depth. The experimental results show that the metalloporphyrin-functionalized macromolecules, CoTCPP -P(4VP-co-St) and ZnTPP -P(4VP-co-St), can be prepared favorably through axial coordination reaction with the side pyridine groups of the copolymer P(4VP-co-St) as ligands. The two complexes have characteristic spectra similar to that of the small molecular metalloporphyrins, CoTCPP and ZnTPP , respectively. At the same time, they also display the characteristic spectroscopic property of axial coordination complexes: the electronic adsorption spectra of CoTCPP -P(4VP-co-St) and ZnTPP -P(4VP-co-St) red-shifted obviously as compared to that of CoTCPP and ZnTPP , and the fluorescence emission of ZnTPP -P(4VP-co-St) blue-shifted apparently with respect to that of ZnTPP . For CoTCPP -P(4VP-co-St) and ZnTPP -P(4VP-co-St), some polymer effects were found: (1) the bonding degree of the small molecular metalloporphyrin, CoTCPP or ZnTPP , on the side chains of the copolymer P(4VP-co-St) has a limit value because of the steric hindrance and there is a bonding degree difference between the actual value and the theoretical value; (2) for ZnTPP -P(4VP-co-St), slight energy transfer between adjacent ZnTPP units on an identical macromolecule occurs, leading to slight static quench of the fluorescence emission as the bonding density of ZnTPP units on the side chains of the copolymer P(4VP-co-St) reaches a certain value.