Two-dimensional correlation infrared spectroscopic study on the conformational changes occurring in the thermally induced pretransition of ribonuclease A

Two-dimensional infrared spectroscopic study on the thermally induced structural changes of glutaraldehyde-crosslinked collagen

The thermal stability of collagen solution (5 mg/mL) crosslinked by glutaraldehyde (GTA) [GTA/collagen (w/w)=0.5] was measured by differential scanning calorimetry and Fourier transform infrared spectroscopy (FTIR), and the thermally induced structural changes were analyzed using two-dimensional (2D) correlation spectra. The denaturation temperature (Td) and enthalpy change (ΔH) of crosslinked collagen were respectively about 27°C and 88 J/g higher than those of native collagen, illuminating the thermal stability increased. With the increase of temperature, the red-shift of absorption bands and the decreased AIII/A1455 value obtained from FTIR spectra indicated that hydrogen bonds were weakened and the unwinding of triple helix occurred for both native and crosslinked collagens; whereas the less changes in red-shifting and AIII/A1455 values for crosslinked collagen also confirmed the increase in thermal stability. Additionally, the 2D correlation analysis provided information about the thermally induced structural changes. In the 2D synchronous spectra, the intensities of auto-peaks at 1655 and 1555 cm(-1), respectively assigned to amide I band (CO stretching vibration) and amide II band (combination of NH bending and CN stretching vibrations) in helical conformation were weaker for crosslinked collagen than those for native collagen, indicating that the helical structure of crosslinked collagen was less sensitive to temperature. Moreover, the sequence of the band intensity variations showed that the band at 1555 cm(-1) moved backwards owing to the addition of GTA, demonstrating that the response of helical structure of crosslinked collagen to the increased temperature lagged. It was speculated that the stabilization of collagen by GTA was due to the reinforcement of triple helical structure.

Multivariate statistical analysis of mid-infrared spectra for a G1 allyl-terminated carbosilane dendrimer

The FTIR spectra were measured for G1 allyl terminated carbosilane dendrimer over a temperature range of 25-200°C to explore the temperature-dependent changes. The dendrimer spectra exhibited complicated patterns and thus were analyzed by both the exploratory principal component analysis (PCA) and two-dimensional (2D) correlation spectroscopy. Boltzmann fitting and score plots of PCA evidenced the phase transition temperature to be about 172°C. Frequency variables, which strongly contributed to each principal component highlighted in their loadings plot, were linked to the frequencies assigned to vibrations of the CH(2) and CH(3) groups, as well as to vibrations of the SiCH groups. 2D correlation spectroscopy discerned all the sequences of group motion of dendrimer, indicating that during the heating process a reorganization of core structure takes place, followed by a conformational rearrangement of the terminal units.

Concatenated two-dimensional correlation analysis: a new possibility for generalized two-dimensional correlation spectroscopy and its application to the examination of process reversibility

We propose a new application of generalized two-dimensional (2D) correlation spectroscopy called "concatenated" 2D correlation analysis, which is useful in identifying the presence of strict similarity or very subtle difference between two spectral data sets having a similar origin. This approach is very efficient and can offer many potential applications. In this study, the detailed examination of process reversibility is explored. Two forms of concatenation, horizontal and vertical concatenation of data matrices, are introduced and the latter is discussed in detail. Concatenated 2D correlation analysis allows one to investigate directly the correlation between two independent but related spectral data sets. It can extract more detailed information, such as the comparison of effects of two different perturbations or different systems. We describe the principle of the "mirror-image concatenation" in 2D correlation analysis, which is applied to demonstrate its reliability and efficiency on three spectral models: a synthetic simulation data set; experimental Fourier transform infrared (FT-IR) spectra of the thermally induced unfolding-refolding transition of bovine pancreatic ribonuclease A (RNase A) in aqueous solution; and a set of FT-IR spectra of traditional Chinese medicines (TCM) of similar origin. The concatenated 2D correlation analysis shows its power in revealing the irreversibility of the thermally induced conformation transition of RNase A as well as the comparison of different species of TCM.