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Dexlin XDD, Tarika JDD, Kumar AA, Beaula TJ. Hypothetical confirmation for the anti-bacterial compound potassium succinate-succinic acid in comparison with certain succinate derivatives. J Biomol Struct Dyn 2024; 42:1237-1248. [PMID: 37021491 DOI: 10.1080/07391102.2023.2199078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Accepted: 03/29/2023] [Indexed: 04/07/2023]
Abstract
The development of antibacterial medications has recently been promoted due to the non- effective usage of antibiotics and the rise in severe bacterial infections. The effectiveness of antimicrobial therapy alternatives is constrained due to the prevalence of germs that are resistant to medications. Our current study's goal is to favor metallic compounds for antibiotic delivery in order to increase the effectiveness of the antibacterial regimen. Due to its bioactivity, potassium succinate-succinic acid is preferred because in general, the succinic acid compound has the greatest potential against microbial infections and a natural antibiotic because of its relative acidic nature. In the current study, the molecular geometry, band gap energies, molecular electrostatic interactions and potential energy distribution of the molecule were compared with those of certain succinate derivatives. The potential compound potassium succinate succinic acid was probed using FT-IR and FT-Raman analyses. Vibrational assignments pertaining to different modes of vibration with potential energy distribution have been improved by normal coordinate analysis. The chemical bond stability which is largely important for biological activity is studied using NBO analysis. The molecular docking study suggests that the molecule possesses antibacterial action and displays a minimal binding energy of -5.3 kcal/mol which can be endorsed for the prevention of any bacterial illness. From the results of our studies, the material would be stable and bioactive according to the FMO study, which indicates a band gap value of 4.35 eV and the pharmacokinetic features of the molecule, was predicted using the ADMET factors and the drug-likeness test.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- X D Divya Dexlin
- Department of Physics and Research Centre, Malankara Catholic College, Mariagiri, Tamilnadu, India
- Manonmaniam Sundaranar University, Tirunelveli, Tamilnadu, India
| | - J D Deephlin Tarika
- Department of Physics and Research Centre, Malankara Catholic College, Mariagiri, Tamilnadu, India
- Manonmaniam Sundaranar University, Tirunelveli, Tamilnadu, India
| | - A Arun Kumar
- Department of Physics (H & Sc), Methodist College of Engineering & Technology (Autonomous), Hyderabad, India
| | - T Joselin Beaula
- Department of Physics and Research Centre, Malankara Catholic College, Mariagiri, Tamilnadu, India
- Manonmaniam Sundaranar University, Tirunelveli, Tamilnadu, India
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2
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Mu PF, Zhang L, Bu R, Xiong LF, Liu YW, Gao EQ. Guanidine-Based Covalent Organic Frameworks: Cooperation between Cores and Linkers for Chromic Sensing and Efficient CO 2 Conversion. ACS APPLIED MATERIALS & INTERFACES 2023; 15:6902-6911. [PMID: 36694474 DOI: 10.1021/acsami.2c20510] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
C(sp)-H carboxylation with CO2 is an attractive route of CO2 utilization and is traditionally promoted by transition metal catalysts, and organocatalysis for the conversion remains rarely explored and challenging. In this article, triaminoguanidine-derived covalent organic frameworks (COFs) were used as platforms to develop heterogeneous organocatalysts for the reaction. We demonstrated that the COFs with guanidine cores and pyrazine linkers show high catalytic performance as a result of the cooperation between cores and linkers. The core is vitally important, which is deprotonated to the guanidinato group that binds and activates CO2. The pyrazine linker collaborates with the core to activate the C(sp)-H bond through hydrogen bonding. In addition, the COFs show acid- and base-responsive chromic behaviors thanks to the amphoteric nature of the core and the auxochromic effect of the pyrazine linker. The work opens up new avenues to organocatalysts for C-H carboxylation and chromic materials for sensing and switching applications.
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Affiliation(s)
- Peng-Fei Mu
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
| | - Lin Zhang
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
| | - Ran Bu
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
| | - Li-Fei Xiong
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
| | - Ya-Wei Liu
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
| | - En-Qing Gao
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
- Institute of Eco-Chongming, Shanghai 202162, China
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3
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Leroux M, Weber G, Bellat JP, Bezverkhyy I, Mercier N. Supramolecular Open-Framework of a Bipyridinium-Carboxylate Based Copper Complex with High and Reversible Water Uptake. Z Anorg Allg Chem 2016. [DOI: 10.1002/zaac.201600281] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Maxime Leroux
- MOLTECH-Anjou UMR-CNRS 6200; University of Angers; 2 Bd Lavoisier 49045 Angers France
| | - Guy Weber
- ICB, UMR-CNRS 6303; University of Bourgogne; 9 A. Savary 21078 Dijon France
| | - Jean-Pierre Bellat
- ICB, UMR-CNRS 6303; University of Bourgogne; 9 A. Savary 21078 Dijon France
| | - Igor Bezverkhyy
- ICB, UMR-CNRS 6303; University of Bourgogne; 9 A. Savary 21078 Dijon France
| | - Nicolas Mercier
- MOLTECH-Anjou UMR-CNRS 6200; University of Angers; 2 Bd Lavoisier 49045 Angers France
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Leroux M, Mercier N, Allain M, Dul MC, Dittmer J, Kassiba AH, Bellat JP, Weber G, Bezverkhyy I. Porous Coordination Polymer Based on Bipyridinium Carboxylate Linkers with High and Reversible Ammonia Uptake. Inorg Chem 2016; 55:8587-94. [DOI: 10.1021/acs.inorgchem.6b01119] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Maxime Leroux
- MOLTECH Anjou, UMR-CNRS 6200, Université d’Angers, 2 Bd Lavoisier, 49045 Angers, France
| | - Nicolas Mercier
- MOLTECH Anjou, UMR-CNRS 6200, Université d’Angers, 2 Bd Lavoisier, 49045 Angers, France
| | - Magali Allain
- MOLTECH Anjou, UMR-CNRS 6200, Université d’Angers, 2 Bd Lavoisier, 49045 Angers, France
| | - Marie-Claire Dul
- MOLTECH Anjou, UMR-CNRS 6200, Université d’Angers, 2 Bd Lavoisier, 49045 Angers, France
| | - Jens Dittmer
- IMMM, UMR-CNRS 6283, Université du Maine, Avenue O. Messiaen, 72085 Le Mans, France
| | - Abdel Hadi Kassiba
- IMMM, UMR-CNRS 6283, Université du Maine, Avenue O. Messiaen, 72085 Le Mans, France
| | - Jean-Pierre Bellat
- ICB, UMR-CNRS 6303, Université de Bourgogne-Franche Comté, 9 A. Savary, 21078 Dijon, France
| | - Guy Weber
- ICB, UMR-CNRS 6303, Université de Bourgogne-Franche Comté, 9 A. Savary, 21078 Dijon, France
| | - Igor Bezverkhyy
- ICB, UMR-CNRS 6303, Université de Bourgogne-Franche Comté, 9 A. Savary, 21078 Dijon, France
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5
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Sutton CCR, da Silva G, Franks GV. Modeling the IR Spectra of Aqueous Metal Carboxylate Complexes: Correlation between Bonding Geometry and Stretching Mode Wavenumber Shifts. Chemistry 2015; 21:6801-5. [DOI: 10.1002/chem.201406516] [Citation(s) in RCA: 83] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2014] [Indexed: 11/09/2022]
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Bernini MC, García Blanco AA, Villarroel-Rocha J, Fairen-Jimenez D, Sapag K, Ramirez-Pastor AJ, Narda GE. Tuning the target composition of amine-grafted CPO-27-Mg for capture of CO2 under post-combustion and air filtering conditions: a combined experimental and computational study. Dalton Trans 2015; 44:18970-82. [DOI: 10.1039/c5dt03137k] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A computational and experimental study is performed to determine the optimal composition that enhances the adsorption performance at low pressure.
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Affiliation(s)
- M. C. Bernini
- Área de Química General e Inorgánica
- Facultad de Química
- Bioquímica y Farmacia
- Universidad Nacional de San Luis. Instituto de InvestigacionesenTecnologíaQuímica (INTEQUI-CONICET)
- 5700 San Luis
| | - A. A. García Blanco
- Departamento de Física. Universidad Nacional de San Luis. Instituto de FísicaAplicada (INFAP-CONICET)
- 5700 San Luis
- Argentina
| | - J. Villarroel-Rocha
- Departamento de Física. Universidad Nacional de San Luis. Instituto de FísicaAplicada (INFAP-CONICET)
- 5700 San Luis
- Argentina
| | - D. Fairen-Jimenez
- Department of Chemical Engineering and Biotechnology
- University of Cambridge
- Cambridge CB2 3RA
- UK
| | - K. Sapag
- Departamento de Física. Universidad Nacional de San Luis. Instituto de FísicaAplicada (INFAP-CONICET)
- 5700 San Luis
- Argentina
| | - A. J. Ramirez-Pastor
- Departamento de Física. Universidad Nacional de San Luis. Instituto de FísicaAplicada (INFAP-CONICET)
- 5700 San Luis
- Argentina
| | - G. E. Narda
- Área de Química General e Inorgánica
- Facultad de Química
- Bioquímica y Farmacia
- Universidad Nacional de San Luis. Instituto de InvestigacionesenTecnologíaQuímica (INTEQUI-CONICET)
- 5700 San Luis
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7
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Gomez GE, Bernini MC, Brusau EV, Narda GE, Vega D, Kaczmarek AM, Van Deun R, Nazzarro M. Layered exfoliable crystalline materials based on Sm-, Eu- and Eu/Gd-2-phenylsuccinate frameworks. Crystal structure, topology and luminescence properties. Dalton Trans 2015; 44:3417-29. [DOI: 10.1039/c4dt02844a] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
New layered 2D MOFs based on 2-phenylsuccinate, Sm, Eu and Eu/Gd are a suitable platform for obtaining exfoliatable frameworks with luminescence properties for potential applications as thin films.
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Affiliation(s)
- G. E. Gomez
- Instituto de Investigaciones en Tecnología Química (INTEQUI). Area de Química General e Inorgánica “Dr. G.F. Puelles”
- Facultad de Química
- Bioquímica y Farmacia
- Chacabuco y Pedernera
- Universidad Nacional de San Luis
| | - M. C. Bernini
- Instituto de Investigaciones en Tecnología Química (INTEQUI). Area de Química General e Inorgánica “Dr. G.F. Puelles”
- Facultad de Química
- Bioquímica y Farmacia
- Chacabuco y Pedernera
- Universidad Nacional de San Luis
| | - E. V. Brusau
- Instituto de Investigaciones en Tecnología Química (INTEQUI). Area de Química General e Inorgánica “Dr. G.F. Puelles”
- Facultad de Química
- Bioquímica y Farmacia
- Chacabuco y Pedernera
- Universidad Nacional de San Luis
| | - G. E. Narda
- Instituto de Investigaciones en Tecnología Química (INTEQUI). Area de Química General e Inorgánica “Dr. G.F. Puelles”
- Facultad de Química
- Bioquímica y Farmacia
- Chacabuco y Pedernera
- Universidad Nacional de San Luis
| | - D. Vega
- Gerencia de Investigación y Aplicaciones
- Centro Atómico Constituyentes
- Comisión Nacional de Energía Atómica
- 1650 San Martín
- Argentina
| | - A. M. Kaczmarek
- L3 – Luminescent Lanthanide Lab
- f-element coordination chemistry
- Ghent University
- Department of Inorganic and Physical Chemistry
- 9000 Gent
| | - R. Van Deun
- L3 – Luminescent Lanthanide Lab
- f-element coordination chemistry
- Ghent University
- Department of Inorganic and Physical Chemistry
- 9000 Gent
| | - M. Nazzarro
- Instituto de Física Aplicada (INFAP-CONICET)
- Facultad de Ciencias Físico
- Matemáticas y Naturales
- Universidad Nacional de San Luis
- Dpto. de Física
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8
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Jin J, Wang X, Li Y, Chi Y, Niu S. Synthesis, structure, and photophysical property of series of Ln(III) coordination polymers with different carboxylato ligands (Ln = Sm, Eu). Struct Chem 2012. [DOI: 10.1007/s11224-012-9957-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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9
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Bernini M, Brusau E, Narda G, Echeverria G, Fantoni A, Punte G, Ayala A. Tapes of water hexamer clusters in the interlayer space of a 2D MOF: Structural, spectroscopic and computational insight of the confined water. Polyhedron 2012. [DOI: 10.1016/j.poly.2011.10.030] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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10
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Bernini MC, Snejko N, Gutierrez-Puebla E, Brusau EV, Narda GE, Monge MÁ. Structure-Directing and Template Roles of Aromatic Molecules in the Self-Assembly Formation Process of 3D Holmium–Succinate MOFs. Inorg Chem 2011; 50:5958-68. [DOI: 10.1021/ic102472u] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- María C. Bernini
- Instituto de Ciencia de Materiales de Madrid, CSIC, Madrid, Spain
- Área de Química General e Inorgánica “Dr. G. F. Puelles”, Facultad de Química, Bioquímica y Farmacia, Universidad Nacional de San Luis, Chacabuco y Pedernera, 5700 San Luis, Argentina
| | - Natalia Snejko
- Instituto de Ciencia de Materiales de Madrid, CSIC, Madrid, Spain
| | | | - Elena V. Brusau
- Área de Química General e Inorgánica “Dr. G. F. Puelles”, Facultad de Química, Bioquímica y Farmacia, Universidad Nacional de San Luis, Chacabuco y Pedernera, 5700 San Luis, Argentina
| | - Griselda E. Narda
- Área de Química General e Inorgánica “Dr. G. F. Puelles”, Facultad de Química, Bioquímica y Farmacia, Universidad Nacional de San Luis, Chacabuco y Pedernera, 5700 San Luis, Argentina
| | - M. Ángeles Monge
- Instituto de Ciencia de Materiales de Madrid, CSIC, Madrid, Spain
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11
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Bernini M, Gándara F, Iglesias M, Snejko N, Gutiérrez-Puebla E, Brusau E, Narda G, Monge M. Reversible Breaking and Forming of Metal-Ligand Coordination Bonds: Temperature-Triggered Single-Crystal to Single-Crystal Transformation in a Metal-Organic Framework. Chemistry 2009; 15:4896-905. [DOI: 10.1002/chem.200802385] [Citation(s) in RCA: 107] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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