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Interactions of pyridoxine (Vitamin B6) with squaric acid and water. Experimental and theoretical studies. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131773] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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2
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Gołdyn M, Skowronek J, Komasa A, Bartoszak-Adamska E, Lewandowska A, Dega-Szafran Z, Cofta G. Synthesis and structural characteristic of pyridine carboxylic acid adducts with squaric acid. CrystEngComm 2022. [DOI: 10.1039/d2ce00760f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Squaric acid was used as a coformer to pyridine carboxylic acid cocrystallization. Adducts were obtained by evaporation from solution. Spectroscopic and theoretical studies were also performed. Thermal analysis reveals the high thermal stability of the obtained complexes.
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Affiliation(s)
- Mateusz Gołdyn
- Faculty of Chemistry, Adam Mickiewicz University, Uniwersytetu Poznańskiego 8, Poznań 61-614, Poland
| | - Julia Skowronek
- Faculty of Chemistry, Adam Mickiewicz University, Uniwersytetu Poznańskiego 8, Poznań 61-614, Poland
| | - Anna Komasa
- Faculty of Chemistry, Adam Mickiewicz University, Uniwersytetu Poznańskiego 8, Poznań 61-614, Poland
| | | | - Aneta Lewandowska
- Department of Polymers, Faculty of Chemical Technology, Institute of Chemical Technology and Engineering, Poznan University of Technology, Berdychowo 4, Poznań 60-965, Poland
| | - Zofia Dega-Szafran
- Faculty of Chemistry, Adam Mickiewicz University, Uniwersytetu Poznańskiego 8, Poznań 61-614, Poland
| | - Grzegorz Cofta
- Department of Chemical Wood Technology, Faculty of Forestry and Wood Technology, Poznań University of Life Sciences, Wojska Polskiego 28, Poznań 60-637, Poland
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3
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Prohens R, Portell A, Font-Bardia M, Bauzá A, Frontera A. H-Bonded anion–anion complex trapped in a squaramido-based receptor. Chem Commun (Camb) 2018; 54:1841-1844. [DOI: 10.1039/c7cc09241e] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
We report the experimental observation (X-ray characterization) of an anion–anion complex (anion = hydrogen fumarate) stabilized by H-bonds that is trapped in a secondary squaramide receptor.
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Affiliation(s)
- Rafel Prohens
- Unitat de Polimorfisme i Calorimetria, Centres Científics i Tecnològics
- Universitat de Barcelona
- 08028 Barcelona
- Spain
| | - Anna Portell
- Unitat de Polimorfisme i Calorimetria, Centres Científics i Tecnològics
- Universitat de Barcelona
- 08028 Barcelona
- Spain
| | - Mercè Font-Bardia
- Unitat de Difracció de Raigs X
- Centres Científics i Tecnològics
- Universitat de Barcelona
- Barcelona
- Spain
| | - Antonio Bauzá
- Departament de Química
- Universitat de les Illes Balears
- 07122 Palma
- Spain
| | - Antonio Frontera
- Departament de Química
- Universitat de les Illes Balears
- 07122 Palma
- Spain
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4
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Prohens R, Portell A, Vallcorba O, Font-Bardia M, Bauzá A, Frontera A. Polymorphism in secondary squaramides: on the importance of π-interactions involving the four membered ring. CrystEngComm 2018. [DOI: 10.1039/c7ce01945a] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
We report the crystal structures of four new squaric acid derivatives, i.e. three polymorphs of 3,4-bis((2-(dimethylamino)ethyl)amino)cyclobut-3-ene-1,2-dione (1a–c) and a cocrystal with resorcinol. A DFT study has been also carried out to investigate the supramolecular assemblies.
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Affiliation(s)
- Rafel Prohens
- Unitat de Polimorfisme i Calorimetria
- Centres Científics i Tecnològics
- Universitat de Barcelona
- 08028 Barcelona
- Spain
| | - Anna Portell
- Unitat de Polimorfisme i Calorimetria
- Centres Científics i Tecnològics
- Universitat de Barcelona
- 08028 Barcelona
- Spain
| | - Oriol Vallcorba
- ALBA Synchrotron Light Source
- Cerdanyola del Vallès
- Barcelona 08920
- Spain
| | - Mercè Font-Bardia
- Unitat de Difracció de Raigs X
- Centres Científics i Tecnològics
- Universitat de Barcelona
- Spain
| | - Antonio Bauzá
- Departament de Química
- Universitat de les Illes Balears
- 07122 Palma (Baleares)
- Spain
| | - Antonio Frontera
- Departament de Química
- Universitat de les Illes Balears
- 07122 Palma (Baleares)
- Spain
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Prohens R, Portell A, Font-Bardia M, Bauzá A, Frontera A. A combined crystallographic and theoretical study of weak intermolecular interactions in crystalline squaric acid esters and amides. CrystEngComm 2017. [DOI: 10.1039/c7ce00556c] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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6
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Prohens R, Portell A, Font-Bardia M, Bauzá A, Frontera A. Experimental and theoretical study of weak intermolecular interactions in crystalline tertiary squaramides. CrystEngComm 2016. [DOI: 10.1039/c6ce01299j] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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7
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Bartoszak-Adamska E, Dega-Szafran Z, Komasa A, Szafran M. Structural, spectroscopic and computational studies of the 2:1 complex of nipecotic acid with squaric acid. Chem Phys 2014. [DOI: 10.1016/j.chemphys.2014.09.004] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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8
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Anioła M, Dega-Szafran Z, Katrusiak A, Szafran M. NH⋯O and OH⋯O interactions of glycine derivatives with squaric acid. NEW J CHEM 2014. [DOI: 10.1039/c4nj00212a] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Hydrogen-bonded complexes of glycine, sarcosine, dimethylgycine and betaine with squaric acid have been synthesized and characterized by X-ray diffraction, FTIR, NMR and DFT methods.
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Affiliation(s)
- Michalina Anioła
- Faculty of Chemistry
- Adam Mickiewicz University
- 61-614 Poznań, Poland
| | | | | | - Mirosław Szafran
- Faculty of Chemistry
- Adam Mickiewicz University
- 61-614 Poznań, Poland
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Şerb MD, Kalf I, Englert U. Biguanide and squaric acid as pH-dependent building blocks in crystal engineering. CrystEngComm 2014. [DOI: 10.1039/c4ce01643b] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Biguanides and squaric acid are attractive partners for crystal engineering: they incorporate multiple sites that can donate or accept hydrogen bonds. Protonation equilibria in their solutions and the outcome of crystallization experiments are pH dependent: 10 different salts have been obtained from N,N-dimethylbiguanide, N-phenylbiguanide and N-o-tolylbiguanide.
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Affiliation(s)
- Mihaela-Diana Şerb
- Faculty of Applied Chemistry and Materials Science
- University Politehnica of Bucharest
- 011061 Bucharest, Romania
| | - Irmgard Kalf
- Institute of Inorganic Chemistry
- RWTH Aachen University
- Aachen 52074, Germany
| | - Ulli Englert
- Institute of Inorganic Chemistry
- RWTH Aachen University
- Aachen 52074, Germany
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10
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Guidara S, Feki H, Abid Y. Vibrational spectral studies and non-linear optical properties of L-leucine L-leucinium picrate: a Density Functional Theory approach. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2013; 115:437-444. [PMID: 23867646 DOI: 10.1016/j.saa.2013.06.080] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2013] [Revised: 06/11/2013] [Accepted: 06/19/2013] [Indexed: 06/02/2023]
Abstract
Single crystals of l-leucine l-leucinium picrate were grown by slow evaporation at room temperature and were characterized by X-ray powder diffraction study to confirm the crystalline nature of the synthesized compound. The optimized molecular structure, vibrational spectra and the optical properties were calculated by the Density Functional Theory (DFT) method using the B3LYP function with the 6-31G(d) basis set. Good consistency is found between the calculated results and the experimental structure, IR, and Raman spectra. The detailed interpretation of the vibrational modes was carried out. The natural bond orbital (NBO) analysis, confirms the occurrence of intermolecular hydrogen bonds that are responsible for the stabilization of the title compound, leading to high nonlinear optical (NLO) activity. The lowering in the HOMO and LUMO energy gap explains the eventual charge transfer interactions that take place within the molecules.
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Affiliation(s)
- Sameh Guidara
- Laboratoire de Physique Appliquée (LPA), Université de Sfax, Faculté des Sciences, BP 1171, 3000 Sfax, Tunisia.
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Dega-Szafran Z, Katrusiak A, Komasa A, Szafran M. Supramolecular structure of the 1:2 complex of 1,4-dimethylpiperazine mono-betaine with squaric acid. Supramol Chem 2013. [DOI: 10.1080/10610278.2013.792342] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Zofia Dega-Szafran
- a Faculty of Chemistry, Adam Mickiewicz University , Umultowska 89B, 61-614, Poznań , Poland
| | - Andrzej Katrusiak
- a Faculty of Chemistry, Adam Mickiewicz University , Umultowska 89B, 61-614, Poznań , Poland
| | - Anna Komasa
- a Faculty of Chemistry, Adam Mickiewicz University , Umultowska 89B, 61-614, Poznań , Poland
| | - Miroslaw Szafran
- a Faculty of Chemistry, Adam Mickiewicz University , Umultowska 89B, 61-614, Poznań , Poland
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13
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Barczyński P, Dega-Szafran Z, Katrusiak A, Szafran M. Hydrogen bonds and electrostatic interactions in the 1:1 complex of DABCO di-betaine with squaric acid: Crystallographic, theoretical and spectroscopic studies. J Mol Struct 2012. [DOI: 10.1016/j.molstruc.2011.11.010] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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14
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Dega-Szafran Z, Dutkiewicz G, Kosturkiewicz Z, Szafran M. Structural, spectroscopic and theoretical studies of the 1:1 complex of N-methylpiperidine betaine with squaric acid. J Mol Struct 2012. [DOI: 10.1016/j.molstruc.2012.02.019] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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15
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Barczyński P, Dega-Szafran Z, Katrusiak A, Szafran M. Interactions of squaric acid with DABCO mono-betaine: Structural, spectroscopic and calculation studies. J Mol Struct 2012. [DOI: 10.1016/j.molstruc.2011.12.041] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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16
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Dega-Szafran Z, Dutkiewicz G, Kosturkiewicz Z, Szafran M. Three hydrogen-bonded complexes of trigonelline with squaric acid: Crystallographic, spectroscopic and theoretical studies. J Mol Struct 2012. [DOI: 10.1016/j.molstruc.2011.10.030] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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17
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Barczyński P, Dega-Szafran Z, Katrusiak A, Szafran M. The 1:2:1 adduct of DABCO dication, hydrogen squarate and water molecules studied by X-ray diffraction and FTIR spectroscopy. J Mol Struct 2011. [DOI: 10.1016/j.molstruc.2011.05.043] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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18
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Nowicka-Scheibe J, Grech E, Sawka-Dobrowolska W, Bator G, Pawlukojć A, Sobczyk L. Structure and vibrational spectra of squaric acid complexes with 4,4′- and 5,5′-dimethyl-2,2′-bipyridine. J Mol Struct 2010. [DOI: 10.1016/j.molstruc.2009.08.039] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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19
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A distortion of the aromatic character of 7-azaindole in solid-state after its N7 protonation: linear polarized IR-spectroscopy of embedded chemicals in nematic host. J INCL PHENOM MACRO 2010. [DOI: 10.1007/s10847-010-9789-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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20
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de Oliveira VE, de Carvalho GS, Yoshida MI, Donnici CL, Speziali NL, Diniz R, de Oliveira LFC. Bis(dicyanomethylene)squarate squaraines in their 1,2- and 1,3-forms: Synthesis, crystal structure and spectroscopic study of compounds containing alkali metals and tetrabutylammonium ions. J Mol Struct 2009. [DOI: 10.1016/j.molstruc.2009.08.002] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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