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Athmani H, Kijatkin C, Benali-Cherif R, Pillet S, Schaniel D, Imlau M, Benali-Cherif N, Bendeif EE. Nonlinear optical organic-inorganic crystals: synthesis, structural analysis and verification of harmonic generation in tri-(o-chloroanilinium nitrate). ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES 2019; 75:107-114. [PMID: 30575588 DOI: 10.1107/s2053273318014122] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2018] [Accepted: 10/05/2018] [Indexed: 05/05/2023]
Abstract
The structural and nonlinear optical properties of a new anilinium hybrid crystal of chemical formula (C6H7NCl+·NO3-)3 have been investigated. The crystal structure was determined from single-crystal X-ray diffraction measurements performed at a temperature of 100 K which show that the compound crystallizes in a noncentrosymmetric space group (Pna21). The structural analysis was coupled with Hirshfeld surface analysis to evaluate the contribution of the different intermolecular interactions to the formation of supramolecular assemblies in the solid state that exhibit nonlinear optical features. This analysis reveals that the studied compound is characterized by a three-dimensional network of hydrogen bonds and the main contributions are provided by the O...H, C...H, H...H and Cl...H interactions, which alone represent ∼85% of the total contributions to the Hirshfeld surfaces. It is noteworthy that the halogen...H contributions are quite comparable with those of the H...H contacts. The nonlinear optical properties were investigated by nonlinear diffuse femtosecond-pulse reflectometry and the obtained results were compared with those of the reference material LiNbO3. The hybrid crystals exhibit notable second (SHG) and third (THG) harmonic generation which confirms its polarity is generated by the different intermolecular interactions. These measurements also highlight that the THG signal of the new anilinium compound normalized to its SHG counterpart is more pronounced than for LiNbO3.
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Affiliation(s)
- Hamza Athmani
- Laboratoire des Structures, Propriétés et Interactions Interatomiques, Université Abbes Laghrour-Khenchela, Khenchela, 40000, Algeria
| | | | - Rim Benali-Cherif
- Laboratoire des Structures, Propriétés et Interactions Interatomiques, Université Abbes Laghrour-Khenchela, Khenchela, 40000, Algeria
| | | | | | - Mirco Imlau
- School of Physics, Osnabrück University, Osnabrück, 49076, Germany
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Mondal PK, Hathwar VR, Chopra D. Characterization of electronic features of intermolecular interactions involving organic fluorine: Inputs from in situ cryo-crystallization studies on F and CF3 substituted anilines. J Fluor Chem 2018. [DOI: 10.1016/j.jfluchem.2018.03.016] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Nayak SK, Mallik SB, Kanaujia SP, Sekar K, Ranganathan KR, Ananthalakshmi V, Jeyaraman G, Saralaya SS, Rao KS, Shridhara K, Nagarajan K, Row TNG. Crystal structures and binding studies of atovaquone and its derivatives with cytochrome bc1: a molecular basis for drug design. CrystEngComm 2013. [DOI: 10.1039/c3ce40336j] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Nayak SK, Terraneo G, Forni A, Metrangolo P, Resnati G. C–Br⋯O supramolecular synthon: in situ cryocrystallography of low melting halogen-bonded complexes. CrystEngComm 2012. [DOI: 10.1039/c2ce25403d] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Sunil SL, Nayak SK, Hathwar VR, Chopra D, Guru Row TN. Role of Fluorine in Weak Interactions in Co-crystals. PHARMACEUTICAL SALTS AND CO-CRYSTALS 2011. [DOI: 10.1039/9781849733502-00029] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
The presence of the C–F bond (commonly referred to as organic fluorine) in a large number of pharmaceutically relevant compounds suggests that it may be used in the production of novel salts and co-crystals that have intermolecular interactions involving fluorine. There is an ongoing debate in this context as fluorine is characterized by its high electronegativity, relatively small size and very low polarizability. The propensity of hydrogen to participate in generating highly directional and energetically stable hydrogen bonds has been exploited in the design of co-crystals and salts of many pharmaceutical compounds. A direct extension of this property to fluorine, however, is not plausible and thus intermolecular interactions involving fluorine must be quantified. Recent results and new approaches designed to evaluate organic fluorine which provide useful inputs for the design of co-crystals and salts are discussed in this chapter.
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Affiliation(s)
- Seetha Lekshmi Sunil
- Solid State and Structural Chemistry Unit Indian Institute of Science, Bangalore 560012 India
| | - Susanta K. Nayak
- Solid State and Structural Chemistry Unit Indian Institute of Science, Bangalore 560012 India
| | - Venkatesha R. Hathwar
- Solid State and Structural Chemistry Unit Indian Institute of Science, Bangalore 560012 India
| | - Deepak Chopra
- Department of Chemistry Indian Institute of Science Education and Research, Bhopal, 462023 India
| | - Tayur N. Guru Row
- Solid State and Structural Chemistry Unit Indian Institute of Science, Bangalore 560012 India
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Rodríguez Pirani L, Erben MF, Boese R, Pozzi CG, Fantoni AC, Della Védova CO. Conformational preference of chlorothioformate species: molecular structure of ethyl chlorothioformate, ClC(O)SCH2CH3, in the solid phase and NBO analysis. ACTA CRYSTALLOGRAPHICA SECTION B: STRUCTURAL SCIENCE 2011; 67:350-6. [DOI: 10.1107/s0108768111017575] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2010] [Accepted: 05/10/2011] [Indexed: 11/10/2022]
Abstract
The molecular structure of ethyl chlorothioformate, ClC(O)SCH2CH3, has been investigated in the solid phase by X-ray diffraction analysis at low temperature using a miniature zone-melting procedure and IR laser radiation. The crystalline solid consists exclusively of molecules with the synperiplanar conformation with respect to the C=O double bond and the S—C single bond, and gauche orientation of the ethyl group (syn-gauche). These results coincide with previous studies devoted to gas-phase conformational properties. The conformational preference for the ClC(O)SY (Y = Cl, CF3, CH3 and CH2CH3) series of molecules was rationalized using the natural bond orbital (NBO) scheme. It was found that both resonance (mesomeric) and anomeric (hyperconjugation) intermolecular charge-transfer interactions are important for describing the syn ↔ anti equilibrium, also illustrating the effect of electronegativity of the substituent in the conformation preference of the ClC(O)S— moiety. On the basis of the atoms in molecules (AIM) theory, intermolecular interactions have been characterized in the B3LYP/6-31G** periodic boundary electron density.
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Hathwar VR, Row TNG. Nature of Cl···Cl Intermolecular Interactions via Experimental and Theoretical Charge Density Analysis: Correlation of Polar Flattening Effects with Geometry. J Phys Chem A 2010; 114:13434-41. [DOI: 10.1021/jp1100413] [Citation(s) in RCA: 109] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Venkatesha R. Hathwar
- Solid State and Structural Chemistry Unit, Indian Institute of Science, Bangalore-560012, India
| | - Tayur N. Guru Row
- Solid State and Structural Chemistry Unit, Indian Institute of Science, Bangalore-560012, India
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Hathwar VR, Roopan SM, Subashini R, Khan FN, Guru Row TN. Analysis of Cl…Cl and C-H…Cl intermolecular interactions involving chlorine in substituted 2-chloroquinoline derivatives. J CHEM SCI 2010. [DOI: 10.1007/s12039-010-0056-1] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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