1
|
Zeng Z, Qasem AMA, Blagbrough IS, Woodman TJ. Intramolecular through-space NMR spectroscopic effect of steric compression on 1H NMR spectroscopy. Org Biomol Chem 2024. [PMID: 39248501 DOI: 10.1039/d4ob01108b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/10/2024]
Abstract
The intramolecular through-space NMR spectroscopic effect of steric compression is related to intramolecular through-space van der Waals repulsion. The electron cloud of a proton can be pushed away by the electron cloud of a nearby proton or functional group. As the electron population of the sterically compressed proton is decreased (therefore deshielded), the chemical shift sharply moves downfield, which may result in ambiguity for the proton signal assignment. Also, the conformation of the local area of the sterically compressed proton can be altered by the steric repulsion, therefore, the coupling constant/coupling pattern of a sterically compressed proton could be influenced. This review summarizes and presents the impacts on the chemical shift and coupling constant by the 1H NMR spectroscopic effect of steric compression extracted from the reported examples from the 1950s to 2021.
Collapse
Affiliation(s)
- Ziyu Zeng
- Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 501 Haike Road, Zhang Jiang Hi-Tech Park, Pudong, Shanghai 201203, P. R. China
| | - Ashraf M A Qasem
- Department of Pharmaceutical Sciences, Faculty of Pharmacy, Zarqa University, Jordan.
| | | | | |
Collapse
|
2
|
Yuvaraj C, Muthukumaran G, Pandiarajan K. Conformational study of some 2, 4-diaryl-7-(t-butyl) –3-azabicyclo [3.3.1] nonan-9-ones. Detection of minor isomer with chair- boat conformation. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129528] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
|
3
|
Ferreira AE, Soares ACF, Pavan JCS, Kovatch PY, Sakamoto HT, Lopes JLC, Palaretti V, Heleno VCG. Detailed 1 H and 13 C NMR structural assignments of four sesquiterpene lactones isolated from Eremanthus elaeagnus (Asteraceae). MAGNETIC RESONANCE IN CHEMISTRY : MRC 2020; 58:975-980. [PMID: 32678924 DOI: 10.1002/mrc.5076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Revised: 06/12/2020] [Accepted: 07/14/2020] [Indexed: 06/11/2023]
Abstract
A complete 1 H and 13 C NMR analysis for a group of four sesquiterpene lactones isolated from Eremanthus elaeagnus (Asteraceae) is described in this work. 1 H NMR, 13 C {1 H} NMR, gCOSY, gHMQC, and gHMBC experiments were performed to provide sufficient structural information to allow an unequivocal assignment. All hydrogen coupling constants were measured, clarifying all hydrogen signal multiplicities.
Collapse
Affiliation(s)
- Alexsandro E Ferreira
- Center for Research in Exact and Technological Sciences, University of Franca, Franca, Brazil
| | - Ana Carolina F Soares
- Center for Research in Exact and Technological Sciences, University of Franca, Franca, Brazil
| | - Julian C S Pavan
- Center for Research in Exact and Technological Sciences, University of Franca, Franca, Brazil
| | - Pedro Y Kovatch
- Center for Research in Exact and Technological Sciences, University of Franca, Franca, Brazil
| | - Humberto T Sakamoto
- Faculty of Pharmaceutical Sciences of Riberão Preto, University of São Paulo, Ribeirão Preto, Brazil
| | - João L Callegari Lopes
- Faculty of Pharmaceutical Sciences of Riberão Preto, University of São Paulo, Ribeirão Preto, Brazil
| | - Vinícius Palaretti
- Department of Chemistry, Faculty of Philosophy, Sciences and Letters of Ribeirão Preto, University of São Paulo, Ribeirão Preto, Brazil
| | - Vladimir C G Heleno
- Center for Research in Exact and Technological Sciences, University of Franca, Franca, Brazil
| |
Collapse
|
4
|
Vengatesh G, Sundaravadivelu M. Unprecedented synthesis, 1D, and 2D NMR spectral studies of 2,4,6,11-tetraaryl-9-oxa-1,5-diazatricyclo[5.3.1.0 3.8 ] undecane via a novel rearrangement. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2019; 57:522-529. [PMID: 31113008 DOI: 10.1002/mrc.4893] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2019] [Revised: 05/11/2019] [Accepted: 05/14/2019] [Indexed: 06/09/2023]
Affiliation(s)
- Gopal Vengatesh
- Department of Chemistry, The Gandhigram Rural Institute (Deemed to be University), Gandhigram, India
| | - Manthiram Sundaravadivelu
- Department of Chemistry, The Gandhigram Rural Institute (Deemed to be University), Gandhigram, India
| |
Collapse
|
5
|
Vengatesh G, Sundaravadivelu M. Synthesis, 1D and 2D NMR spectral assignments, and stereochemical studies of some 4,8,9,10-tetraaryl-1,3-diazaadamantan-6-one oximes. Struct Chem 2019. [DOI: 10.1007/s11224-019-01326-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
6
|
Britvin SN, Rumyantsev AM, Zobnina AE, Padkina MV. Molecular structure, interatomic interactions and vibrational analysis of 1,4-diazabicyclo[3.2.1]octane parent ring system. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2016.10.065] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
7
|
Garcias-Morales C, Ortegón-Reyna D, Ariza-Castolo A. Investigation of the role of stereoelectronic effects in the conformation of piperidones by NMR spectroscopy and X-ray diffraction. Beilstein J Org Chem 2015; 11:1973-84. [PMID: 26664617 PMCID: PMC4660988 DOI: 10.3762/bjoc.11.213] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2015] [Accepted: 10/01/2015] [Indexed: 12/28/2022] Open
Abstract
This paper reports the synthesis of a series of piperidones 1-8 by the Mannich reaction and analysis of their structures and conformations in solution by NMR and mass spectrometry. The six-membered rings in 2,4,6,8-tetraphenyl-3,7-diazabicyclo[3.3.1]nonan-9-ones, compounds 1 and 2, adopt a chair-boat conformation, while those in 2,4-diphenyl-3-azabicyclo[3.3.1]nonan-9-ones, compounds 3-8, adopt a chair-chair conformation because of stereoelectronic effects. These stereoelectronic effects were analyzed by the (1) J C-H coupling constants, which were measured in the (13)C satellites of the (1)H NMR spectra obtained with the hetero-dqf pulse sequence. In the solid state, these stereoelectronic effects were investigated by measurement of X-ray diffraction data, the molecular geometry (torsional bond angles and bond distances), and inter- and intramolecular interactions, and by natural bond orbital analysis, which was performed using density functional theory at the ωB97XD/6311++G(d,p) level. We found that one of the main factors influencing the conformational stability of 3-8 is the interaction between the lone-pair electrons of nitrogen and the antibonding sigma orbital of C(7)-Heq (nN→σ*C-H(7)eq), a type of hyperconjugative interaction.
Collapse
Affiliation(s)
- Cesar Garcias-Morales
- Departamento de Química, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Avenida Instituto Politécnico Nacional 2508 Colonia San Pedro Zacatenco, C.P. 07360, México, D.F., Mexico
| | - David Ortegón-Reyna
- Departamento de Química, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Avenida Instituto Politécnico Nacional 2508 Colonia San Pedro Zacatenco, C.P. 07360, México, D.F., Mexico
| | - Armando Ariza-Castolo
- Departamento de Química, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Avenida Instituto Politécnico Nacional 2508 Colonia San Pedro Zacatenco, C.P. 07360, México, D.F., Mexico
| |
Collapse
|
8
|
Synthesis, spectral, structural and biological studies of N-cyclohexyl-2-(2,4-diphenyl-3-azabicyclo[3.3.1]nonan-9-ylidene)hydrazinecarbothioamide derivatives. J Mol Struct 2015. [DOI: 10.1016/j.molstruc.2015.01.044] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
9
|
Park DH, Ramkumar V, Parthiban P. Crystal structure of 2,4-bis-(2-chloro-phen-yl)-7-tert-pent-yl-3-aza-bicyclo[3.3.1]nonan-9-one. Acta Crystallogr Sect E Struct Rep Online 2014; 70:o1161-2. [PMID: 25484804 PMCID: PMC4257353 DOI: 10.1107/s160053681402176x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2014] [Accepted: 10/02/2014] [Indexed: 11/14/2022]
Abstract
The title compound, C25H29Cl2NO, which is a chloro analog of 2,4-bis(2-bromophenyl)-7-(tert-pentyl)-3-azabicyclo[3.3.1]nonan-9-one [Park, Ramkumar & Parthiban (2012). Acta Cryst. E68, o2946], exists in a twin-chair conformation with an equatorial orientation of the 2-chlorophenyl groups. The tert-pentyl group on the cyclohexanone adopts an exocyclic equatorial position and is disordered between two orientations in a ratio 0.520 (8):0.480 (8). The crystal packing shows no directional contacts beyond van der Waals contacts.
Collapse
Affiliation(s)
- Dong Ho Park
- Department of Biomedicinal Chemistry, Inje University, Gimhae, Gyeongnam 621 749, Republic of Korea
| | - V Ramkumar
- Department of Chemistry, IIT Madras, Chennai 600 036, TamilNadu, India
| | - P Parthiban
- Department of Biomedicinal Chemistry, Inje University, Gimhae, Gyeongnam 621 749, Republic of Korea ; Department of Chemistry, VEL TECH, Avadi, Chennai 600 062, India
| |
Collapse
|
10
|
Park DH, Ramkumar V, Parthiban P. 2,4-Bis(2-eth-oxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one. Acta Crystallogr Sect E Struct Rep Online 2012; 68:o3282. [PMID: 23468794 PMCID: PMC3588829 DOI: 10.1107/s1600536812044856] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2012] [Accepted: 10/30/2012] [Indexed: 06/01/2023]
Abstract
The asymmetric unit of the title compound, C24H29NO3, contains two independent mol-ecules, which each exibit a twin-chair conformation with an equatorial orientation of the ortho-eth-oxy-phenyl groups but different dihedral angles [41.3 (1) and 24.1 (1)°] between the benzene rings. In the crystal, pairs of weak C-H⋯O hydrogen bonds link the two different independent mol-ecules into dimers.
Collapse
Affiliation(s)
- Dong Ho Park
- Department of Biomedicinal Chemistry, Inje University, Gimhae, Gyeongnam 621 749, Republic of Korea
| | - V. Ramkumar
- Department of Chemistry, IIT Madras, Chennai 600 036, TamilNadu, India
| | - P. Parthiban
- Department of Biomedicinal Chemistry, Inje University, Gimhae, Gyeongnam 621 749, Republic of Korea
| |
Collapse
|
11
|
Park DH, Ramkumar V, Parthiban P. 2,4-Bis(2-bromo-phen-yl)-7-tert-pentyl-3-aza-bicyclo-[3.3.1]nonan-9-one. Acta Crystallogr Sect E Struct Rep Online 2012; 68:o2946. [PMID: 23125731 PMCID: PMC3470318 DOI: 10.1107/s1600536812039128] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2012] [Accepted: 09/13/2012] [Indexed: 11/10/2022]
Abstract
The title compound, C25H29Br2NO, is a tert-pentyl analog of 2,4-bis(2-bromophenyl)-3-azabicyclo[3.3.1]nonan-9-one [Parthiban et al. (2008 ▶). Acta Cryst. E64, o2385]. Similar to its analog, the title compound exists in a twin-chair conformation with an equatorial orientation of the 2-bromophenyl groups. The benzene rings are inclined to each other at a dihedral angle of 29.6 (3)°. The tert-pentyl group on the cyclohexanone ring also adopts an exocyclic equatorial disposition.
Collapse
Affiliation(s)
- Dong Ho Park
- Department of Biomedicinal Chemistry, Inje University, Gimhae, Gyeongnam 621 749, Republic of Korea
| | | | | |
Collapse
|
12
|
Park DH, Ramkumar V, Parthiban P. 2,4-Bis(4-eth-oxy-phen-yl)-1-methyl-3-aza-bicyclo-[3.3.1]nonan-9-one. Acta Crystallogr Sect E Struct Rep Online 2012; 68:o2999. [PMID: 23125771 PMCID: PMC3470358 DOI: 10.1107/s1600536812039840] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2012] [Accepted: 09/19/2012] [Indexed: 11/10/2022]
Abstract
In the title compound, C25H30NO3, a crystallographic mirror plane bisects the molecule. Although it is a positional isomer of 2,4-bis(4-ethoxyphenyl)-7-methyl-3-azabicyclo[3.3.1]nonan-9-one [C25H31NO3, Mr = 393.51; Park et al. (2012c ▶). Acta Cryst. E68, o779–780], its molecular weight is 392.50 due to the 50:50 ratio of the methyl group at bridgehead C atoms. However, the title compound exists in the same twin-chair conformation as its 7-methyl isomer. Also, the 4-ethoxyphenyl groups are equatorially oriented on the bicycle as in its isomer. In the title compound, the cyclohexanone ring deviates from an ideal chair (total puckering amplitude QT = 0.5390 Å) and the piperidone ring is closer to an ideal chair (QT = 0.6064 Å). These QT values are very similar to those of its isomer. Even though a center of symmetry passes through the 7-methyl analog, the benzene rings are oriented 26.11 (3)° with respect to each other, whereas the orientation is 53.10 (3)° for the title compound. The title compound exhibits intermolecular N—H⋯O interactions [H⋯A = 2.25 (2) Å, versus 2.26 (2) Å for the analog].
Collapse
Affiliation(s)
- Dong Ho Park
- Department of Biomedicinal Chemistry, Inje University, Gimhae, Gyeongnam 621 749, Republic of Korea
| | | | | |
Collapse
|
13
|
Park DH, Ramkumar V, Parthiban P. 2,4-Bis(4-eth-oxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one. Acta Crystallogr Sect E Struct Rep Online 2012; 68:o2841. [PMID: 23125645 PMCID: PMC3470201 DOI: 10.1107/s1600536812037385] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2012] [Accepted: 08/30/2012] [Indexed: 11/10/2022]
Abstract
The title compound, C(24)H(29)NO(3), exists in a twin-chair conformation with an equatorial orientation of the 4-eth-oxy-phenyl groups. The benzene rings are inclined to each other at an angle of 28.0 (1)°. In the crystal, weak C-H⋯O inter-actions link mol-ecules related by translation into chains along the b axis. The crystal packing exhibits π-π inter-actions between the benzene rings of neighbouring mol-ecules [centroid-centroid distance = 3.692 (3) Å].
Collapse
Affiliation(s)
- Dong Ho Park
- Department of Biomedicinal Chemistry, Inje University, Gimhae, Gyeongnam 621 749, Republic of Korea
| | | | | |
Collapse
|
14
|
|