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Unsalan O, Sert Y, Altunayar-Unsalan C, Erten-Ela S. Heterojunction solar cell based on donor-acceptor pi-conjugated naphthalene bisbenzimidazole, perylene bisbenzimidazole, and naphthalene imidazole: A spectroscopic, microscopic and DFT assessment. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 294:122516. [PMID: 36868025 DOI: 10.1016/j.saa.2023.122516] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Revised: 02/13/2023] [Accepted: 02/15/2023] [Indexed: 06/18/2023]
Abstract
This study represents detailed vibrational analysis of naphthalene bisbenzimidazole (NBBI), perylene bisbenzimidazole (PBBI), and naphthalene imidazole (NI) by vibrational spectroscopic (Fourier Transform Infrared (FT-IR) and Raman), Atomic Force Microscopic (AFM) and quantum chemical studies for the first time. These sorts of compounds provide an opportunity to build potential n-type organic thin film phototransistors which can be used as organic semiconductors. Optimized molecular structures and vibrational wavenumbers of these molecules in their ground states have been calculated by Density Functional Theory (DFT) using B3LYP functional with 6-311++G(d,p) basis set. Finally, theoretical UV-Visible spectrum was predicted and Light Harvesting Efficiencies (LHE) were evaluated. AFM analysis revealed that PBBI has the highest surface roughness thus exhibits an increase in high Jsc value and high conversion efficiency.
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Affiliation(s)
- Ozan Unsalan
- Ege University, Faculty of Science, Department of Physics, 35100 Bornova, Izmir, Turkey.
| | - Yusuf Sert
- Bozok University, Sorgun Vocational School, Yozgat 66100, Turkey.
| | - Cisem Altunayar-Unsalan
- Ege University, Central Research Testing and Analysis Laboratory Research and Application Center, 35100 Bornova, Izmir, Turkey
| | - Sule Erten-Ela
- Solar Energy Institute, Ege University, 35100 Bornova, Izmir, Turkey
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Synthesis, characterization and in vitro evaluation of cytotoxicity and antibacterial properties of vanadyl complexes of the pyridoxal Schiff bases. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.131189] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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3
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Hamd Hssain A, Gündüz B, Majid A, Bulut N. NTCDA compounds of optoelectronic interest: Theoretical insights and experimental investigation. Chem Phys Lett 2021. [DOI: 10.1016/j.cplett.2021.138918] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Alaşalvar C, Öztürk N, Gökce H, Güder A, Menteşe E, Bektaş H. Synthesis, structural, spectral, antioxidant, bioactivity and molecular docking investigations of a novel triazole derivative. J Biomol Struct Dyn 2021; 40:6642-6655. [PMID: 33594957 DOI: 10.1080/07391102.2021.1887764] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
The structural, spectroscopic and electronic properties of 4-(4-nitrophenyl)-5-(pyridin-3-yl)-2,4-dihydro-3H-1,2,4-triazole-3-thione have been analyzed by using single crystal X-ray diffraction (SCXRD), 1H and 13C NMR chemical shifts and FT-IR spectroscopic methods both theoretically and experimentally. The tautomeric (thiol and thione) energetic analysis results, structural optimization parameters (bond lengths and angles), vibrational wavenumbers, proton and carbon NMR chemical shifts, UV-Vis. parameters, the highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) analyses and Molecular Electrostatic Potential (MEP) surface have been calculated by using DFT/B3LYP quantum chemical method with 6-311++G(2d,2p) basis set to compare with the experimental results. The computed geometry parameters, vibrational wavenumbers, and NMR chemical shifts have been in good agreement with the experimental results. It should be noted that the radical scavenging activities of the title compound have been evaluated by using different test methods i.e. 2,2-Diphenyl-1-picrylhydrazyl (DPPH), N,N-dimethyl-p-phenylenediamine (DMPD) and 2,2'-azino-bis-(3-ethylbenzothiazoline-6-sulfonate) (ABTS). According to obtained results, the title compound displayed DPPH (SC50 19.42 ± 0.11 μg/mL), DMPD (SC50 21.13 ± 0.08 μg/mL) and ABTS (SC50 38.17 ± 0.25 μg/mL) scavenging activities. Also, these results have been compared with Butylated hydroxyanisole (BHA), Rutin (RUT) and Trolox (TRO) used as standard compounds. The physicochemical, pharmacokinetic, and toxicity features of the compound have been determined by using drug-likeness and in silico ADMET investigations. The interaction results with SARS-CoV-2 main protease (Mpro) of the title ligand compound have been analyzed via the help of molecular docking study.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Can Alaşalvar
- Technical Science Vocational High School, Giresun University, Giresun, Turkey
| | - Nuri Öztürk
- Dereli Vocational School, Giresun University, Giresun, Turkey
| | - Halil Gökce
- Vocational High School of Health Services, Giresun University, Giresun, Turkey
| | - Aytaç Güder
- Vocational High School of Health Services, Giresun University, Giresun, Turkey
| | - Emre Menteşe
- Faculty of Art and Science, Recep Tayyip Erdogan University, Rize, Turkey
| | - Hakan Bektaş
- Faculty of Art and Science, Giresun University, Giresun, Turkey
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Hajam TA, Saleem H, Padhusha MSA, Mohammed Ameen KK. Synthesis, quantum chemical calculations and molecular docking studies of 2-ethoxy-4[(2-trifluromethyl-phenylimino)methyl]phenol. Mol Phys 2020. [DOI: 10.1080/00268976.2020.1781945] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
| | - H. Saleem
- Department of Physics, Annamalai University, Annamalainagar, India
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Koca İ, Yiğitcan S, Gümüş M, Gökce H, Sert Y. A new series of sulfa drugs containing pyrazolyl acylthiourea moiety: Synthesis, experimental and theoretical spectral characterization and molecular docking studies. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127479] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Eltayeb NE, Şen F, Lasri J, Hussien MA, Elsilk SE, Babgi BA, Gökce H, Sert Y. Hirshfeld Surface analysis, spectroscopic, biological studies and molecular docking of (4E)-4-((naphthalen-2-yl)methyleneamino)-1,2-dihydro-2,3-dimethyl-1-phenylpyrazol-5-one. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127315] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Kaya S, Gökce H, Arslan T, Alpaslan G. Synthesis, spectroscopic characterization, DFT computations, nonlinear optical profile and molecular docking study of a novel chalcone derivative. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127270] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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Sert Y, Al-Wahaibi LH, Gökce H, Hassan HM, Alsfouk A, El-Emam AA. Molecular docking, Hirshfeld surface analysis and spectroscopic investigations of 1-(adamantan-1-yl)-3-(4-fluorophenyl)thiourea: A potential bioactive agent. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2019.136762] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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Yavari M, Beyramabadi SA, Morsali A, Bozorgmehr MR. Synthesis, Experimental and Theoretical Studies on N,N′-Dipyridoxyl(4-Chloro-1,2-Phenylenediamine) Tetradentate Ligand and Its Copper(II) Complex. J STRUCT CHEM+ 2019. [DOI: 10.1134/s0022476619080055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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12
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Gümüş M, Sert Y, Yalkın A, Gökce H, Koca İ. Synthesis, Experimental and Theoretical Characterization of Novel Pyrimidine‐5‐Carboxamides. ChemistrySelect 2019. [DOI: 10.1002/slct.201900780] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Mehmet Gümüş
- Akdağmadeni Health CollegeYozgat Bozok University, Yozgat TURKEY
| | - Yusuf Sert
- Sorgun Vocational SchoolYozgat Bozok University, 66700 Yozgat Turkey
| | - Ahmet Yalkın
- Mezitli District National Education Directorate, Mersin TURKEY
| | - Halil Gökce
- Vocational School of Health ServicesGiresun University, 28200 Giresun Turkey
| | - İrfan Koca
- Department of ChemistryFaculty of Art & Sciences, Yozgat Bozok University, 66200Yozgat TURKEY
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Gökce H, Alpaslan G, Alaşalvar C. Crystal structure, spectroscopic characterization, DFT computations and molecular docking study of a synthesized Zn(II) complex. J COORD CHEM 2019. [DOI: 10.1080/00958972.2019.1590708] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Halil Gökce
- Vocational School of Health Services, Giresun University, Giresun, Turkey
| | - Gökhan Alpaslan
- Vocational School of Health Services, Giresun University, Giresun, Turkey
| | - Can Alaşalvar
- Technical Science Vocational High School, Giresun University, Giresun, Turkey
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Raouf H, Beyramabadi SA, Allameh S, Morsali A. Synthesis, experimental and theoretical characterizations of a 1,2,4-triazole Schiff base and its nickel(II) complex. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.11.073] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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Kaya S, Gökce H, El-Azab AS, Sert Y, Alanazi MM, Öztürk N, Al-Agamy MHM, Abdel-Aziz AAM. Structural, Spectroscopic, Electronic and Molecular Docking Studies on (11 R
,12 S
)-16-Aminotetracyclo[6.6.2.0 2,7
.0 9,14
]hexadeca-2(7),3,5,9(14),10,12-hexaen-15-ol. ChemistrySelect 2019. [DOI: 10.1002/slct.201803732] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Serdal Kaya
- Department of Chemistry; Faculty of Arts and Sciences; Giresun University; 28200 Giresun Turkey
| | - Halil Gökce
- Vocational School of Health Services; Giresun University, 28200; Giresun Turkey
| | - Adel S. El-Azab
- Department of Pharmaceutical Chemistry; College of Pharmacy; King Saud University; 11451 Riyadh Saudi Arabia
- Department of Organic Chemistry; Faculty of Pharmacy; Al-Azhar University; 11884 Cairo Egypt
| | - Yusuf Sert
- Sorgun Vocational School; Bozok University; 66100 Yozgat Turkey
| | - Mohammed M. Alanazi
- Department of Pharmaceutical Chemistry; College of Pharmacy; King Saud University; 11451 Riyadh Saudi Arabia
| | - Nuri Öztürk
- Dereli Vocational School; Giresun University; 28950 Giresun Turkey
| | - Mohamed H. M. Al-Agamy
- Department of Pharmaceutics and Microbiology; College of Pharmacy; King Saud University; Riyadh 11451 Saudi Arabia
| | - Alaa A.-M. Abdel-Aziz
- Department of Pharmaceutical Chemistry; College of Pharmacy; King Saud University; 11451 Riyadh Saudi Arabia
- Department of Medicinal Chemistry; Faculty of Pharmacy; Mansoura University; 35516 Mansoura Egypt
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Yavari M, Beyramabadi SA, Morsali A, Bozorgmehr MR. Tautomerization Reaction, Experimental and Theoretical Characterizations of the N,N′-Dipyridoxyl(4-Methyl-1,2-Phenylenediamine) Schiff Base and its Cu(II) Complex. J STRUCT CHEM+ 2018. [DOI: 10.1134/s0022476618050128] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Jafari-Moghaddam F, Beyramabadi SA, Khashi M, Morsali A. Three VO 2+ complexes of the pyridoxal-derived Schiff bases: Synthesis, experimental and theoretical characterizations, and catalytic activity in a cyclocondensation reaction. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2017.10.007] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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18
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Habibi M, Beyramabadi SA, Allameh S, Khashi M, Morsali A, Pordel M, Khorsandi-Chenarboo M. Synthesis, experimental and theoretical characterizations of a new Schiff base derived from 2-pyridincarboxaldehyde and its Ni (II) complex. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.04.114] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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19
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Structural, spectroscopic, electronic, nonlinear optical and thermodynamic properties of a synthesized Schiff base compound: A combined experimental and theoretical approach. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.01.089] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
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20
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Theoretical and spectroscopic (FT-IR, NMR and UV–Vis.) characterizations of 3-p-chlorobenzyl-4-(4-carboxybenzylidenamino)-4,5-dihydro-1H-1,2,4-triazol-5-one molecule. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2016.07.092] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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21
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Ceylan Ü, Tarı GÖ, Gökce H, Ağar E. Spectroscopic (FT–IR and UV–Vis) and theoretical (HF and DFT) investigation of 2-Ethyl-N-[(5-nitrothiophene-2-yl)methylidene]aniline. J Mol Struct 2016. [DOI: 10.1016/j.molstruc.2016.01.019] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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