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Bashir M, Mantoo IA, Yousuf I. Peroxidase-like oxidative activity of cobalt-based 1D coordination polymer; experimental and theoretical investigations. J Mol Model 2023; 29:221. [PMID: 37400745 DOI: 10.1007/s00894-023-05639-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Accepted: 06/28/2023] [Indexed: 07/05/2023]
Abstract
CONTEXT The present work describes the synthesis, structural characterization, and catalytic activity of a Co(II)-based one-dimensional coordination polymer (CP1). To validate the chemotherapeutic potential of CP1, in vitro DNA binding assessment was carried out by employing multispectroscopic techniques. Moreover, the catalytic activity of CP1 was also ascertained during the oxidative conversion of o-phenylenediamine (OPD) to diaminophenazine (DAP) under aerobic conditions. METHODS The molecular structure of CP1 was solved with the olex2.solve structure solution program using charge flipping and refined with the olex2.refine refinement package by using Gauss-Newton minimization. The DFT studies were performed by utilizing ORCA Program Version 4.1.1 to calculate the electronic and chemical properties of CP1 by calculating the HOMO-LUMO energy gap. All calculations were carried out at B3LYP hybrid functional using def2-TZVP as the basis set. Contour plots of various FMOs were visualized by using Avogadro software. Hirshfeld surface analysis was carried out by Crystal explorer Program 17.5.27 to examine the various non-covalent interactions which are crucial for the stability of crystal lattice. In addition, molecular docking studies of CP1 with DNA were performed by using AutoDock Vina software and AutoDock tools (version 1.5.6). Discovery studio 3.5 Client 2020 was used for visualization of the docked pose and binding interactions of CP1 with ct-DNA.
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Affiliation(s)
- Masrat Bashir
- Department of Chemistry, Aligarh Muslim University, Aligarh, Uttar Pradesh, 202002, India
| | - Imtiyaz Ahmad Mantoo
- Department of Chemistry, Aligarh Muslim University, Aligarh, Uttar Pradesh, 202002, India
| | - Imtiyaz Yousuf
- Department of Chemistry, Aligarh Muslim University, Aligarh, Uttar Pradesh, 202002, India.
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Mahato RK, Das S, Joshi M, Choudhury AR, Misra A, Biswas B. Biomimics of phenazine oxidase activity of a cobalt (III)‐dipyridylamine complex: Spectroscopic, structural, and computational studies
†. Appl Organomet Chem 2021. [DOI: 10.1002/aoc.6483] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
| | - Soumik Das
- Department of Chemistry University of North Bengal Darjeeling India
| | - Mayank Joshi
- Department of Chemical Sciences Indian Institute of Science Education and Research (IISER) Mohali India
| | - Angshuman Roy Choudhury
- Department of Chemical Sciences Indian Institute of Science Education and Research (IISER) Mohali India
| | - Anirban Misra
- Department of Chemistry University of North Bengal Darjeeling India
| | - Bhaskar Biswas
- Department of Chemistry University of North Bengal Darjeeling India
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Mawai K, Nathani S, Tuglak Khan FS, Verma P, Kumari S, Roy P, Singh UP, Ghosh K. Dinuclear μ‐Phenoxo and μ‐Hydroxo Bridged Copper Complexes Exhibiting Oxidation of Phenols and Isoelectronic Compounds: Cytotoxicity and Evidences for Cellular Apoptosis. ChemistrySelect 2020. [DOI: 10.1002/slct.201903923] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Kiran Mawai
- Department of chemistry Indian Institute of Technology Roorkee Roorkee, Uttarakhand 247667 India
| | - Sandip Nathani
- Department of Biotechnology Indian Institute of Technology Roorkee Roorkee, Uttarakhand 247667 India
| | - Firoz Shah Tuglak Khan
- Department of chemistry Indian Institute of Technology Kanpur Kanpur, Uttar Pradesh 208016 India
| | - Pankaj Verma
- Department of chemistry Indian Institute of Technology Roorkee Roorkee, Uttarakhand 247667 India
| | - Sheela Kumari
- Department of chemistry Indian Institute of Technology Roorkee Roorkee, Uttarakhand 247667 India
| | - Partha Roy
- Department of Biotechnology Indian Institute of Technology Roorkee Roorkee, Uttarakhand 247667 India
| | - U. P. Singh
- Department of chemistry Indian Institute of Technology Roorkee Roorkee, Uttarakhand 247667 India
| | - Kaushik Ghosh
- Department of chemistry Indian Institute of Technology Roorkee Roorkee, Uttarakhand 247667 India
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Ghasemi F, Ghasemi K, Rezvani AR, Shokrollahi A, Refahi M, García-Granda S, Mendoza-Meroño R. A novel salt of antidiabetic drug metformin resulting from a proton transfer reaction: Synthesis, characterization, crystal structure and solution studies. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2016.11.011] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Gopalaiah K, Saini A, Chandrudu SN, Rao DC, Yadav H, Kumar B. Copper-catalyzed aerobic oxidative coupling of o-phenylenediamines with 2-aryl/heteroarylethylamines: direct access to construct quinoxalines. Org Biomol Chem 2017; 15:2259-2268. [DOI: 10.1039/c7ob00122c] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
A versatile method for synthesis of quinoxalines by Cu-catalyzed oxidative coupling of o-phenylenediamines with 2-arylethylamines is presented.
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Affiliation(s)
- Kovuru Gopalaiah
- Organic Synthesis and Catalysis Laboratory
- Department of Chemistry
- University of Delhi
- Delhi 110007
- India
| | - Anupama Saini
- Organic Synthesis and Catalysis Laboratory
- Department of Chemistry
- University of Delhi
- Delhi 110007
- India
| | - Sankala Naga Chandrudu
- Organic Synthesis and Catalysis Laboratory
- Department of Chemistry
- University of Delhi
- Delhi 110007
- India
| | - Devarapalli Chenna Rao
- Organic Synthesis and Catalysis Laboratory
- Department of Chemistry
- University of Delhi
- Delhi 110007
- India
| | - Harsh Yadav
- Crystal Lab
- Department of Physics & Astrophysics
- University of Delhi
- Delhi 110007
- India
| | - Binay Kumar
- Crystal Lab
- Department of Physics & Astrophysics
- University of Delhi
- Delhi 110007
- India
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Fernandes TS, Vilela RS, Valdo AK, Martins FT, García-España E, Inclán M, Cano J, Lloret F, Julve M, Stumpf HO, Cangussu D. Dicopper(II) Metallacyclophanes with N,N'-2,6-Pyridinebis(oxamate): Solution Study, Synthesis, Crystal Structures, and Magnetic Properties. Inorg Chem 2016; 55:2390-401. [PMID: 26871975 DOI: 10.1021/acs.inorgchem.5b02786] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
The complexing ability of copper(II) in solution by the ligand N,N'-2,6-pyridinebis(oxamic acid) (H4mpyba, H4L) was determined through potentiometric and UV-vis spectroscopy at 25 °C and 0.15 M NaCl. The logarithms of the equilibrium constants for its copper(II) complexes according to the eqs 2H2L + 2Cu ⇆ [Cu2(H2L)2], 2H2L + 2Cu ⇆ [Cu2(H2L) (HL)] + H, 2H2L + 2Cu ⇆ [Cu2(HL)2] + 2H, 2H2L + 2Cu ⇆ [Cu2(HL)(L)] + 3H, and 2H2L + 2Cu ⇆ [Cu2L2] + 4H were 12.02(7), 8.04(5), 1.26(6), -7.51(6), and -16.36(6), respectively. The knowledge of the solution behavior has supported the synthesis of three new compounds bearing the common building block Cu2L2(4-). Their formulas are (Me4N)4[Cu2(mpyba)2(H2O)2]·H2O (1), (Me4N)4[K2Na2Cu4(mpyba)4(H2O)6.8]·1.6H2O (2), and [Na6Cu2(mpyba)2Cl2(H2O)8]·7H2O (3) (Me4N(+) = tetramethylammonium cation). The [Cu2(mpyba)2(H2O)2](4-) tetraanionic unit, which is present in 1, has a [3,3] metallacyclophane-type motif connected by two N-Cu-N bonds. In 2, a heterotrimetallic decanuclear nanocage is formed through front-to-front assembly of two [Cu2(mpyba)2](4-) units, which also coordinate to potassium(I) and sodium(I) cations by means of carboxylate oxygens from oxamate. The structure of 3 consists of heterobimetallic layers of formula [Na6Cu2(mpyba)2Cl2(H2O)8] and crystallization water molecules, which are interlinked by hydrogen bonds leading to a supramolecular three-dimensional network. The investigation of the magnetic properties of 1-3 in the temperature range 1.9-300 K shows the occurrence of ferromagnetic interactions between the dicopper(II) metallacyclophane unit [J = +6.85 (1), +7.40 (2), and +7.90 cm(-1) (3); H = -JSCu1·SCu2, where SCu1 = SCu2 = 1/2]. Theoretical calculations on 1-3 were carried to substantiate the nature and magnitude of the involved magnetic interactions and to support the occurrence of a spin polarization mechanism accounting for them.
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Affiliation(s)
- Tamires S Fernandes
- Universidade Federal de Goiás , Instituto de Química, Campus Samambaia, CP 131, CEP 74001-970 Goiânia, GO Brazil
| | - Ramon S Vilela
- Universidade Federal de Goiás , Instituto de Química, Campus Samambaia, CP 131, CEP 74001-970 Goiânia, GO Brazil
| | - Ana K Valdo
- Universidade Federal de Goiás , Instituto de Química, Campus Samambaia, CP 131, CEP 74001-970 Goiânia, GO Brazil
| | - Felipe T Martins
- Universidade Federal de Goiás , Instituto de Química, Campus Samambaia, CP 131, CEP 74001-970 Goiânia, GO Brazil
| | - Enrique García-España
- Departament de Química Inorgànica/Instituto de Ciencia Molecular (ICMol), Facultat de Química de la Universitat de València , C/Catedrático José Beltrán 2, 46980 Paterna (València), Spain
| | - Mario Inclán
- Departament de Química Inorgànica/Instituto de Ciencia Molecular (ICMol), Facultat de Química de la Universitat de València , C/Catedrático José Beltrán 2, 46980 Paterna (València), Spain
| | - Joan Cano
- Departament de Química Inorgànica/Instituto de Ciencia Molecular (ICMol), Facultat de Química de la Universitat de València , C/Catedrático José Beltrán 2, 46980 Paterna (València), Spain.,Fundació General de la Universitat de València (FGUV), Universitat de València , València, Spain
| | - Francesc Lloret
- Departament de Química Inorgànica/Instituto de Ciencia Molecular (ICMol), Facultat de Química de la Universitat de València , C/Catedrático José Beltrán 2, 46980 Paterna (València), Spain
| | - Miguel Julve
- Departament de Química Inorgànica/Instituto de Ciencia Molecular (ICMol), Facultat de Química de la Universitat de València , C/Catedrático José Beltrán 2, 46980 Paterna (València), Spain
| | - Humberto O Stumpf
- Departamento de Química, ICEx, Universidade Federal de Minas Gerais , Minas Gerais 31270-901, Brazil
| | - Danielle Cangussu
- Universidade Federal de Goiás , Instituto de Química, Campus Samambaia, CP 131, CEP 74001-970 Goiânia, GO Brazil
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