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Perveen M, Noreen L, Waqas M, Mehmood RF, Iqbal J, Manzoor S, Nazir S, Shawky AM, Khera RA. A DFT approach for finding therapeutic potential of graphyne as a nanocarrier in the doxorubicin drug delivery to treat cancer. J Mol Graph Model 2023; 124:108537. [PMID: 37321062 DOI: 10.1016/j.jmgm.2023.108537] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Revised: 05/19/2023] [Accepted: 06/05/2023] [Indexed: 06/17/2023]
Abstract
In the present work, the drug-loading efficacy of graphyne (GYN) for doxorubicin (DOX) drug is investigated for the first time by using density functional theory (DFT). Doxorubicin drug is effective in the cure of numerous types of cancer including bone cancer, gastric, thyroid, bladder, ovarian, breast, and soft tissue cancer. Doxorubicin drug prevents the cell division process by intercalating in the double-helix of DNA and stopping its replication. The optimized, geometrical, energetic, and excited-state characteristics of graphyne (GYN), doxorubicin drug (DOX), and doxorubicin-graphyne complex (DOX@GYN complex) are calculated to see how effective it is as a carrier. The DOX drug interacted with GYN with an adsorption-energy of -1.57 eV (gas-phase). The interaction of GYN with DOX drug is investigated using NCI (non-covalent interaction) analysis. The findings of this analysis showed that the DOX@GYN complex has weak forces of interaction. Charge transfer from doxorubicin drug to GYN during DOX@GYN complex formation is described by charge-decomposition analysis and HOMO-LUMO analysis. The increased dipole-moment (8.41 D) of the DOX@GYN in contrast with therapeutic agent DOX and GYN indicated that the drug will move easily in the biochemical system. Furthermore, the photo-induced electron-transfer process is explored for excited states, and it reveals that upon interaction, fluorescence-quenching will occur in the complex DOX@GYN. In addition, the influence of the positive and negative charge states on the GYN and DOX@GYN is also considered. Overall, the findings indicated that the GYN could be exploited as an effective drug-transporter for the delivery of doxorubicin drug. Investigators will be inspired to look at another 2D nanomaterials for drug transport applications as a result of this theoretical work.
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Affiliation(s)
- Mehvish Perveen
- Department of Chemistry, University of Agriculture, 38000 Faisalabad, Pakistan
| | - Lubna Noreen
- Department of Chemistry, University of Agriculture, 38000 Faisalabad, Pakistan
| | - Muhammad Waqas
- Department of Chemistry, University of Agriculture, 38000 Faisalabad, Pakistan
| | - Rana Farhat Mehmood
- Department of Chemistry, University of Education, Township, Lahore, 54770, Pakistan
| | - Javed Iqbal
- Department of Chemistry, University of Agriculture, 38000 Faisalabad, Pakistan.
| | - Sidra Manzoor
- Department of Chemistry, University of Agriculture, 38000 Faisalabad, Pakistan
| | - Sidra Nazir
- Faisalabad Institute of Cardiology, Faisalabad, Pakistan
| | - Ahmed M Shawky
- Science and Technology Unit (STU), Umm Al-Qura University, Makkah 21955, Saudi Arabia
| | - Rasheed Ahmad Khera
- Department of Chemistry, University of Agriculture, 38000 Faisalabad, Pakistan.
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2
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Investigation on the growth, structural, vibrational, SHG behaviour and DFT studies of imidazolium hydrogen succinate single crystal. CHEMICAL PAPERS 2022. [DOI: 10.1007/s11696-022-02235-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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3
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Prabukanthan P, Bhakyajothi V, Kumar MS, Harichandran G, Dinakaran K, Seenuvasakumaran P. Synthesis, spectroscopic analysis and DFT studies of N-(2-methyl-5-nitro-phenyl)benzamide organic single crystal. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.131172] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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4
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Baloach R, Ayub K, Mahmood T, Asif A, Tabassum S, Gilani MA. A New Strategy of bi-Alkali Metal Doping to Design Boron Phosphide Nanocages of High Nonlinear Optical Response with Better Thermodynamic Stability. J Inorg Organomet Polym Mater 2021. [DOI: 10.1007/s10904-021-02000-6] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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5
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Mishra VR, Ghanavatkar CW, Sharma S, Premarani A, Mathew E, Joe IH, Sekar N. Linear and NLO Properties of Functional Group and Position Isomers of Azo and Azomethine: Comparative Photophysical‐Electrochemical Properties, Z‐Scan and DFT Studies. ChemistrySelect 2020. [DOI: 10.1002/slct.202001072] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Virendra R. Mishra
- Department of Dyestuff Technology Institute of Chemical Technology,Matunga Mumbai India
| | | | - Suryapratap Sharma
- Department of Dyestuff Technology Institute of Chemical Technology,Matunga Mumbai India
- Centre for Molecular and Biophysics Research Department of Physics Mar Ivanios College Thiruananthapuram Kerala 695015 India
| | - Aswathy Premarani
- Centre for Molecular and Biophysics Research Department of Physics Mar Ivanios College Thiruananthapuram Kerala 695015 India
| | - Elizabeth Mathew
- Centre for Molecular and Biophysics Research Department of Physics Mar Ivanios College Thiruananthapuram Kerala 695015 India
| | - Isaac H. Joe
- Centre for Molecular and Biophysics Research Department of Physics Mar Ivanios College Thiruananthapuram Kerala 695015 India
| | - Nagaiyan Sekar
- Department of Dyestuff Technology Institute of Chemical Technology,Matunga Mumbai India
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Khalid M, Ali A, Rehman MFU, Mustaqeem M, Ali S, Khan MU, Asim S, Ahmad N, Saleem M. Exploration of Noncovalent Interactions, Chemical Reactivity, and Nonlinear Optical Properties of Piperidone Derivatives: A Concise Theoretical Approach. ACS OMEGA 2020; 5:13236-13249. [PMID: 32548510 PMCID: PMC7288701 DOI: 10.1021/acsomega.0c01273] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2020] [Accepted: 05/14/2020] [Indexed: 05/05/2023]
Abstract
The organic compounds with a π-bond system lead to electric charge delocalization which enables them to reveal fascinating nonlinear optical properties. Mono-carbonyl curcuminoids also have an appealing skeleton from the conjugation view point. Interesting chemical structures of the 3,5-bis(arylidene)-N-benzenesulfonyl-4-piperidone derivatives motivated us to perform density functional theory (DFT)-based studies. Therefore, computations using the B3LYP/6-311G(d,p) functional of DFT were executed to explore geometric parameters, highest occupied molecular orbital (HOMO)-lowest unoccupied molecular orbital (LUMO) energies, and natural bond orbital (NBO) analyses. Moreover, three different functionals such as HF, B3LYP, and M06 with the 6-311G(d,p) basis set were used to investigate the average polarizability ⟨α⟩ and first hyperpolarizability (βtot)-based properties of all compounds. A good concurrence among calculated and experimental parameters was obtained through root mean square error calculations. The molecular stability of piperidone derivatives was examined using the Hirshfeld surface and NBO analyses. Natural population analysis was also performed to obtain insights about atomic charges. Calculated HOMO-LUMO energies showed that charge transfer interactions take place within the molecules. Moreover, global reactivity parameters including electronegativity, chemical hardness, softness, ionization potential, and electrophilicity were calculated using the HOMO and LUMO energies. The average polarizability ⟨α⟩ and first hyperpolarizability (βtot) values of all compounds were observed to be larger in magnitude at the aforesaid functional than the standard compound.
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Affiliation(s)
- Muhammad Khalid
- Department of Chemistry, Khwaja Fareed University of Engineering & Information
Technology, Rahim Yar Khan 64200, Pakistan
| | - Akbar Ali
- Department
of Chemistry, University of Sargodha, Sargodha 40100, Pakistan
| | | | - Muhammad Mustaqeem
- Department of Chemistry, University of Sargodha Bhakkar Campus, Bhakkar 30000, Pakistan
| | - Shehbaz Ali
- Department of Chemistry, Khwaja Fareed University of Engineering & Information
Technology, Rahim Yar Khan 64200, Pakistan
| | | | - Sumreen Asim
- Department of Chemistry, Khwaja Fareed University of Engineering & Information
Technology, Rahim Yar Khan 64200, Pakistan
| | - Naseeb Ahmad
- Department of Physics, Khwaja Fareed University of Engineering & Information
Technology, Rahim Yar Khan 64200, Pakistan
| | - Muhammad Saleem
- Department of Physics, Khwaja Fareed University of Engineering & Information
Technology, Rahim Yar Khan 64200, Pakistan
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DFT investigation on the intramolecular and intermolecular proton transfer processes in 2-aminobenzothiazole (ABT) in the gas phase and in different solvents. Struct Chem 2019. [DOI: 10.1007/s11224-019-01395-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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8
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Ravichandiran P, Subramaniyan SA, Bella AP, Johnson PM, Kim AR, Shim KS, Yoo DJ. Simple Fluorescence Turn-On Chemosensor for Selective Detection of Ba 2+ Ion and Its Live Cell Imaging. Anal Chem 2019; 91:10095-10101. [PMID: 31248251 DOI: 10.1021/acs.analchem.9b02057] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
A phenoxazine-based fluorescence chemosensor 4PB [(4-(tert-butyl)-N-(4-((4-((5-oxo-5H-benzo[a]phenoxazin-6-yl)amino)phenyl)sulfonyl)phenyl)benzamide)] was designed and synthesized by a simple synthetic methods. The 4PB fluorescence chemosensor selectively detects Ba2+ in the existence of other alkaline metal ions. In addition, 4PB showed high selectivity and sensitivity for Ba2+ detection. The detection limit of 4PB was 0.282 μM and the binding constant was 1.0 × 106 M-1 in CH3CN/H2O (97.5:2.5 v/v, HEPES = 1.25 mM, pH 7.3) medium. This chemosensor functioned through the intramolecular charge transfer (ICT) mechanism, which was further confirmed by DFT studies. Live cell imaging in MCF-7 cells confirmed the cell permeability of 4PB and its capability for specific detection of Ba2+ in living cells.
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Affiliation(s)
- Palanisamy Ravichandiran
- Department of Life Science, Department of Energy Storage/Conversion Engineering of Graduate School, and Hydrogen and Fuel Cell Research Center , Chonbuk National University , Jeollabuk-do 54896 , Republic of Korea
| | - Sivakumar Allur Subramaniyan
- Department of Animal Biotechnology, College of Agriculture and Life Sciences , Chonbuk National University , Jeollabuk-do 54896 , Republic of Korea
| | - Antony Paulraj Bella
- PG and Research Department of Chemistry , Bishop Heber College , Tiruchirappalli - 620017 , Tamil Nadu India
| | - Princy Merlin Johnson
- PG and Research Department of Chemistry , Bishop Heber College , Tiruchirappalli - 620017 , Tamil Nadu India
| | - Ae Rhan Kim
- R&D Center for CANUTECH, Business Incubation Center, Department of Bioenvironmental Chemistry , Chonbuk National University , Jeollabuk-do 54896 , Republic of Korea
| | - Kwan Seob Shim
- Department of Animal Biotechnology, College of Agriculture and Life Sciences , Chonbuk National University , Jeollabuk-do 54896 , Republic of Korea
| | - Dong Jin Yoo
- Department of Life Science, Department of Energy Storage/Conversion Engineering of Graduate School, and Hydrogen and Fuel Cell Research Center , Chonbuk National University , Jeollabuk-do 54896 , Republic of Korea
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Taherpour A(A, Jamshidi M, Rezaei O, Belverdi AR. Photoinduced electron transfer process on emission spectrum of N,N′-bis(salicylidene)-1,2-phenylenediamine as a Mg2+ cation chemosensor: A first principle DFT and TDDFT study. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.02.064] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
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10
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Safi ZS, Al Hasanat SJ, Wazzan NA. DFT investigation of the amino/imino proton transfer process of 2-amino-2-oxazolin-4-one in gas phase and solution. JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2018. [DOI: 10.1142/s0219633618500049] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Density functional theory (DFT) at the B3LYP-6-311[Formula: see text]G(3df,2p)//6-311[Formula: see text]G(d,p) level of theory in the gas phase and solution was performed to investigate the relative stabilities of all possible tautomers of 2-amino-2-oxazolin-4-one. Five different paths have been proposed to investigate the amino/oxo [Formula: see text] imino/oxo proton transfer (PT) process. These paths are direct, mono-, di- and tri-water-assisted and self-assistance (dimerization) PT process. A clear catalytic effect has been observed when the introduction of water molecules and self-dimerization are taken place. Furthermore, barrier energies, equilibrium constants and reaction rate constants of the PT process between amine/oxo and imine/oxo tautomers of the self-assistance and in the presence of one, two and three water-assisted molecules were calculated. The computed activation barriers in the presence of water molecules are about 35–45 kcal/mol lower than those in the isolated case. In addition, the effective rate of the T1 [Formula: see text] T2 processes were also recorded, compared and discussed. Finally, time-dependent–DFT (TD–DFT) was performed to determine the electronic absorption spectra of all species under probe. A reasonable agreement with the available experiments was also achieved.
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Affiliation(s)
- Zaki S. Safi
- Department of Chemistry, Faculty of Science, Al Azhar University-Gaza, Gaza City, P. O. Box 1277, Palestine
| | - Subhia J. Al Hasanat
- Department of Chemistry, Faculty of Science, Al Azhar University-Gaza, Gaza City, P. O. Box 1277, Palestine
| | - Nuha A. Wazzan
- Department of Chemistry, Faculty of Science, King Abdulaziz University, P. O. Box 42805, Jeddah 21589, Saudi Arabia
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Recognition of switching on or off fluorescence emission spectrum on the Schiff-bases as a Mg2+ chemosensor: A first principle DFT and TD-DFT study. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.06.069] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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