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Keskin ZS, Mine Şenol Z, Kaya S, Şimşek S. Prunus mahaleb shell as a sustainable bioresource for carminic acid removal from aqueous solution: Experimental and theoretical studies. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.134618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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2
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Al-Otaibi JS, Sheena Mary Y, Shyma Mary Y, Soman S, Thirunavukkarasu M. Solvation Effects, Reactivity Studies and Molecular Dynamics of Two Phosphonic Acids – Theoretical Investigation. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2126504] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
Affiliation(s)
- Jamelah S. Al-Otaibi
- Department of Chemistry, College of Science, Princess Nourah Bint Abdulrahman University, Riyadh, Saudi Arabia
| | | | | | - Sreejit Soman
- Stemskills Research and Education Lab Private Limited, Faridabad, India
| | - M. Thirunavukkarasu
- Department of Physics, Indo-American College, Cheyyar, India
- Department of Physics, Thiru A Govindasamy Govt. Arts College, Tindivanam, India
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Ullah Z, Mustafa B, Kim HJ, Sheena Mary Y, Shyma Mary Y, Kwon HW. DFT of 5-Fluoro-2-Oxo-1H-Pyrazine-3-Carboxamide (OPC) Adsorption, Spectroscopic, Solvent Effect, and SERS Analysis. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.119076] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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4
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Spectroscopic Investigation and Density Functional Theory prediction of First and Second order Hyperpolarizabilities of 1-(4-Bromophenyl)-3-(2,4-dichlorophenyl)-prop-2-en-1-one. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133807] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Al-Otaibi JS, Mary Y, Mary Y, Soman S, Acharjee N, B.Narayana. Theoretical and experimental investigation of a pyrazole derivative- solvation effects, reactivity analysis and MD simulations. Chem Phys Lett 2022. [DOI: 10.1016/j.cplett.2022.139469] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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Al-Wahaibi LH, Abdalla M, Mary YS, Mary YS, Costa RA, Rana M, El-Emam AA, Hassan HM, Al-Shaalan NH. Spectroscopic, Solvation Effects and MD Simulation of an Adamantane-Carbohydrazide Derivative, a Potential Antiviral Agent. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2039233] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Lamya H. Al-Wahaibi
- Department of Chemistry, College of Sciences, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia
| | - Mohnad Abdalla
- Key Laboratory of Chemical Biology (Ministry of Education), Department of Pharmaceutics, School of Pharmaceutical Sciences, Cheeloo College of Medicine, Shandong University, Jinan, P.R. China
| | | | | | - Renyer Alves Costa
- Department of Chemistry, Federal University of Amazonas (DQ-UFAM), Manaus, Brazil
| | - Meenakshi Rana
- Department of Physics, School of Sciences, Uttarakhand Open University, Haldwani, India
| | - Ali A. El-Emam
- Department of Medicinal Chemistry, Faculty of Pharmacy, Mansoura University, Mansoura, Egypt
| | - Hanan M. Hassan
- Department of Pharmacology and Biochemistry, Faculty of Pharmacy, Delta University for Science and Technology, International Costal Road, Gamasa City, Mansoura, Egypt
| | - Nora H. Al-Shaalan
- Department of Chemistry, College of Sciences, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia
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Kavitha N, Alivelu M. The Computational Study, 3D-QSAR, and Molecular Docking Study of 2-Amino 5-Methyl Pyridine. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2028871] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Natte Kavitha
- Department of Chemistry, Pingle Govt. College for Women, Warangal, Telangana, India
| | - Munagala Alivelu
- Department of Chemistry, Pingle Govt. College for Women, Warangal, Telangana, India
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Edim MM, Louis H, Bisong EA, Chioma AG, Enudi OC, Unimuke TO, Bassey AB, Prince D, Sam QO, Ubana EI, Mujong TH. Electronic structure theory study of the reactivity and structural molecular properties of halo-substituted (F, Cl, Br) and heteroatom (N, O, S) doped cyclobutane. PHYSICAL SCIENCES REVIEWS 2021. [DOI: 10.1515/psr-2020-0138] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Cyclobutane and its halo-substituted derivatives and its heteroatom doped derivatives have been extensively investigated in this study because of the vast applications and interesting chemistry associated with them, the vibrational assignments, Natural Bond Orbital (NBO) analysis, Conceptual Density Functional Theory, Quantum Mechanical Descriptors and Molecular Electrostatic Potential (MEP) analysis have been explored in this study. The corresponding wavenumbers of the studied compounds have as well been assigned by Potential Energy Distribution analysis. Several inter and intramolecular hyperconjugative interactions within the studied compounds have been revealed by the NBO analysis with a confirmation of geometric hybridization and electronic occupancy. The compounds reactivity was observed to decrease down the halo group in manners such as the stability, both were observed to decrease from azetidine to thietane. The distribution of charge was observed to be affected by the ring substituent as observed from the charge population analysis; in addition, adjacent atoms are very much affected by the inherent properties of the substituted atoms. The NBO result suggests that the molecules are stabilized by lone pair delocalization of electrons from the substituted atoms and molecular electrostatic potential (MEP) studies revealed that substituted halogens and doped heteroatoms are important and most probable sites of electrostatic interactions.
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Affiliation(s)
- Moses M. Edim
- Computational and Bio-Simulation Research Group, University of Calabar , Calabar , Nigeria
- Department of Chemistry , Cross River University of Technology , Calabar Nigeria
| | - Hitler Louis
- Computational and Bio-Simulation Research Group, University of Calabar , Calabar , Nigeria
| | - Emmanuel A. Bisong
- Computational and Bio-Simulation Research Group, University of Calabar , Calabar , Nigeria
| | - Apebende G. Chioma
- Computational and Bio-Simulation Research Group, University of Calabar , Calabar , Nigeria
| | - Obieze C. Enudi
- Computational and Bio-Simulation Research Group, University of Calabar , Calabar , Nigeria
| | - Tomsmith O. Unimuke
- Computational and Bio-Simulation Research Group, University of Calabar , Calabar , Nigeria
| | - Asuquo B. Bassey
- Computational and Bio-Simulation Research Group, University of Calabar , Calabar , Nigeria
| | - David Prince
- Computational and Bio-Simulation Research Group, University of Calabar , Calabar , Nigeria
| | - Queen O. Sam
- Computational and Bio-Simulation Research Group, University of Calabar , Calabar , Nigeria
| | - Emmanuel I. Ubana
- Computational and Bio-Simulation Research Group, University of Calabar , Calabar , Nigeria
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Cocrystals of hydrochlorothiazide with picolinamide, tetramethylpyrazine and piperazine: quantum mechanical studies, docking and modelling of the photovoltaic efficiency for DSSC. J Mol Model 2020; 26:256. [PMID: 32885337 DOI: 10.1007/s00894-020-04528-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Accepted: 08/31/2020] [Indexed: 01/06/2023]
Abstract
Cocrystals are of immense applications in crystal engineering and pharmaceutical chemistry. Hydrochlorothiazide is found to form cocrystals with picolinamide (H1), tetramethylpyrazine (H2) and piperazine (H3). It was characterized using IR spectra, and quantum mechanical calculations for geometry and other properties. Frontier orbital energies are used to predict the energy properties and model the possible charge transfer between the constituents of the cocrystal. The frontier molecular orbital analysis indicates chemical reactivity and bioactivity of the cocrystals. The MEP surface reveals the various reactive surfaces in the cocrystal system, which is very important in deciding various biological activities. The UV-Vis spectra show the possible electronic transitions of the molecules. Simulated electronic spectra using TDDFT method with CAM-B3LYP functional were used to investigate the suitability of the cocrystals to be used in DSSC. Moreover, the molecular docking analysis proves that the cocrystals can act as potential inhibitors and paves the way for developing effective drugs.
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FT-IR and FT-Raman investigation, quantum chemical studies, molecular docking study and antimicrobial activity studies on novel bioactive drug of 1-(2,4-Dichlorobenzyl)-3-[2-(3-(4-chlorophenyl)-5-(4-(propan-2-yl)phenyl-4,5-dihydro-1H-pyrazol-1-yl]-4-oxo-4,5-dihydro-1,3-thiazol-5(4H)-ylidence]-2,3-dihydro-1H-indol-2-one. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128244] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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11
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Klisurić OR, Armaković SJ, Armaković S, Marković S, Todorović TR, Portalone G, Novović K, Lozo J, Filipović NR. Structural, biological and in-silico study of quinoline-based chalcogensemicarbazones. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127482] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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12
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Belkhiria M, Hajji M, Mechria A, Cruz TF, Gomes CS, Gomes PT, Guerfel T, Msaddek M. Synthesis and structural studies of hexafluorophosphate-based organic salts: A combined experimental and computational analysis. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127337] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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13
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Mary YS, Mary YS, Thomas R, Narayana B, Samshuddin S, Sarojini BK, Armaković S, Armaković SJ, Pillai GG. Theoretical Studies on the Structure and Various Physico-Chemical and Biological Properties of a Terphenyl Derivative with Immense Anti-Protozoan Activity. Polycycl Aromat Compd 2019. [DOI: 10.1080/10406638.2019.1624974] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Y. Sheena Mary
- Department of Physics, Fatima Mata National College (Autonomous), Kollam, Kerala, India
| | - Y. Shyma Mary
- Department of Physics, Fatima Mata National College (Autonomous), Kollam, Kerala, India
| | - Renjith Thomas
- Department of Chemistry, St. Berchmans College (Autonomous), Changanassery, Kerala, India
| | - B. Narayana
- Department of Chemistry, Mangalore University, Mangalagangothri, Karnataka, India
| | - S. Samshuddin
- Department of Chemistry, Mangalore University, Mangalagangothri, Karnataka, India
- Department of Chemistry, SDM Institute of Technology, Ujire, Karnataka, India
| | - B. K. Sarojini
- Department of Industrial Chemistry, Mangalore University, Mangalagangothri, Karnataka, India
| | - Stevan Armaković
- Department of Physics, Faculty of Sciences, University of Novi Sad, Novi Sad, Serbia
| | - Sanja J. Armaković
- Department of Chemistry, Faculty of Sciences, University of Novi Sad, Novi Sad, Serbia
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Synthesis and spectroscopic study of two new pyrazole derivatives with detailed computational evaluation of their reactivity and pharmaceutical potential. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.01.014] [Citation(s) in RCA: 48] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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15
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Synthesis, conformational, characterization and reactivity study of 1,7-bis(4-bromophenyl)heptane-1,7-dione. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.08.003] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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16
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Muthukkumar M, Bhuvaneswari T, Venkatesh G, Kamal C, Vennila P, Armaković S, Armaković SJ, Sheena Mary Y, Yohannan Panicker C. Synthesis, characterization and computational studies of semicarbazide derivative. J Mol Liq 2018. [DOI: 10.1016/j.molliq.2018.09.123] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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17
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Molecular dynamic simulations, ALIE surface, Fukui functions geometrical, molecular docking and vibrational spectra studies of tetra chloro p and m -xylene. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.06.001] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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