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Al-Otaibi JS, Mary YS, Mary YS, Krátký M, Vinsova J, Gawad J, Gamberini MC. SERS spectra of a bioactive carboximidamide derivative at different concentrations: Experimental and DFT investigations. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2022.134754] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Ghous F, Shukla S, Singh R, Parveen S, Banerjee M, Bishnoi A. Synthesis, Crystal Structure, Computational Investigation, Molecular Docking Analysis and Anti-lung Cancer Activity of Novel (Z)-3-amino-2-(cyclohexylidenehydrazono)thiazolidin-4-one. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2023.135462] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/31/2023]
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3
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Sukanya R, Aruldhas D, HubertJoe I, Balachandran S. Synthesis, Spectroscopic (FTIR, FT-Raman and UV-Vis), Structural Investigation, Chemical Reactivity, AIM, NBO, NLO, Hirshfeld Analysis of 4-Aminobenzoic Acid Pyrazinoic Acid. Polycycl Aromat Compd 2023. [DOI: 10.1080/10406638.2023.2165513] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- R. Sukanya
- Manonmanium Sundaranar University, Tirunelveli, Tamil Nadu, India
- Department of Physics & Research Centre, Nesamony Memmorial Christian College, Marthandam, Tamil Nadu, India
| | - D. Aruldhas
- Department of Physics & Research Centre, Nesamony Memmorial Christian College, Marthandam, Tamil Nadu, India
| | - I. HubertJoe
- Kerala University, Thiruvanthapuram, Kerala, India
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Parthiban A, Sachithanandam V, Sarangapany S, Misra R, Muthukrishnan P, Jeyakumar TC, Purvaja R, Ramesh R. Green synthesis of gold nanoparticles using quercetin biomolecule from mangrove plant, Ceriops tagal: Assessment of antiproliferative properties, cellular uptake and DFT studies. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2022.134167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Al-Otaibi JS, Sheena Mary Y, Fazil S, Mary YS, Sarala S. Modeling the structure and reactivity landscapes of a pyrazole-ammonium ionic derivative using wavefunction-dependent characteristics and screening for potential anti-inflammatory activity. J Biomol Struct Dyn 2022; 40:11190-11202. [PMID: 34328395 DOI: 10.1080/07391102.2021.1957020] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
Spectroscopic investigations of 1-phenyl -2,3-dimethyl-5-oxo-1,2-dihydro-1H-pyrazol-4-ammonium 2[(2-carboxyphenyl) disulfanyl]benzoate (PACB) reported experimentally and theoretically. NH-O interaction is observed and there is a very large downshift for NH-O stretching frequency. Reactive sites are identified from the chemical and electronic properties. For PACB the maximum repulsion was around H33, H55 and H57 atom. LOL shows red regions between C-C and blue around C atoms are surrounded by a delocalized electron cloud. The red ring is a hallmark of electron density depletion from the NCI plot due to electrostatic repulsion and its existences suggests that coordination sphere for PACB is minimally strained around the central ion. Atomic contact energy values and high score of the docking results obtained propose that, PACB may have inhibitory properties and have a significant function in pharmacological chemistry. Molecular dynamics simulation was performed to validate the stability of the title compound with the Bovine thrombin-activatable fibrinolysis inhibitor protein.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Jamelah S Al-Otaibi
- Department of Chemistry, College of Science, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia
| | | | - Shiji Fazil
- Department of Chemistry, Mannaniya College of Arts and Science, Pangode, Kerala, India
| | | | - S Sarala
- Department of Physics, Kanchi Shri Krishna College of Arts and Science, Kanchipuram, Tamil Nadu, India
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Fatima A, Ali A, Rajan R, Verma I, Muthu S, Siddiqui N, Garg P, Javed S. Experimental Spectroscopic, DFT, Molecular Docking, and Molecular Dynamics Simulation Investigations on m-Phenylenediamine (Monomer and Trimer). Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2150655] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
Affiliation(s)
- Aysha Fatima
- S.O.S in Chemistry, Jiwaji University, Gwalior, India
| | - Akram Ali
- Department of Chemistry, CMP College, Allahabad, India
| | - Ramya Rajan
- Department of Chemistry, Amrita Vishwa Vidyapeetham, Kollam, India
| | - Indresh Verma
- Department of Chemistry, Indian Institute of Technology, Kanpur, India
| | - S. Muthu
- Department of Physics, Aringnar Anna Govt. Arts College, Cheyyar, India
| | - Nazia Siddiqui
- Department of Chemistry, Dayalbagh Educational Institute Agra, Agra, India
| | - Pankaj Garg
- Department of Chemistry, GLA University, Mathura, India
| | - Saleem Javed
- Department of Chemistry, University of Allahabad, Prayagraj, India
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Catalytic multicomponent synthesis, biological evaluation, molecular docking, and in silico ADMET studies of some novel 3-alkyl indoles. JOURNAL OF KING SAUD UNIVERSITY - SCIENCE 2022. [DOI: 10.1016/j.jksus.2022.102475] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Synthesis, computational, and molecular docking studies, photophysical properties of (Z)-N-(pyrimidin-2-yl)-4-(thiophen-2-ylmethylene)amino) benzenesulfonamide. J INDIAN CHEM SOC 2022. [DOI: 10.1016/j.jics.2022.100835] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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9
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Structural vibrational analysis (FT-IR, FT-Raman), electronic studies based on solvents (UV–Vis, non-linear optics, frontier molecular orbitals, molecular electrostatic potential, natural bond orbital and Fukui evaluation) and Hirshfeld surface analysis on 4-chloroacetophenone. J INDIAN CHEM SOC 2022. [DOI: 10.1016/j.jics.2022.100871] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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10
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J. AHM, R. P, R. S, A. L, K. L. Structural, Quantum Chemical, Molecular Docking, and Dynamics Studies of Quercetin—A Potent Inhibitor for Colon Cancer. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2149574] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
Affiliation(s)
| | - Premkumar R.
- PG and Research Department of Physics, N.M.S.S.V.N. College, Madurai, India
| | - Sangeetha R.
- Department of Physics, Mannar Thirumalai Naicker College, Madurai, India
| | - Lakshmi A.
- Department of Physics, Mannar Thirumalai Naicker College, Madurai, India
| | - Langeswaran K.
- Department of Biotechnology, Alagappa University, Science Campus, Karaikudi, India
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Savithiri S, Bharanidharan S, Rajarajan G, Sugumar P, Arockia Doss M. 3,5-Diethyl-2r,6c-di(4-chlorophenyl)piperidin-4-one picrate: synthesis, spectral, biological, DFT, ADME and molecular docking studies. Mol Phys 2022. [DOI: 10.1080/00268976.2022.2144520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Affiliation(s)
- S. Savithiri
- Department of Chemistry, Kings Engineering College, Sriperumbudur, Chennai, India
| | - S. Bharanidharan
- Department of Physics, Panimalar Engineering College, Chennai, India
| | - G. Rajarajan
- Department of Chemistry, Annamalai University, Chidambaram, India
- Department of Chemistry, Bharathiar University, Coimbatore, India
| | - P. Sugumar
- Department of Physics, Agni College of Technology, Thalambur, Chennai, India
| | - M. Arockia Doss
- Department of Chemistry, St. Joseph University, Dimapur, India
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12
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Chen R, Li Q, Xu K, Wang T, Ma J, Cao L, Teng B, Wu H. Structural and spectroscopic analysis, solvent effect on the molecular properties and molecular docking of trans-2-(4-(dimethylamino) styryl)-benzothiazole. Chem Phys Lett 2022. [DOI: 10.1016/j.cplett.2022.140192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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13
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Anitha K, Nataraj A, Narayana B, Karthick T. Spectral Characteristics, DFT Exploration, Electronic Properties, Molecular Docking and Biological Activity of 2E-1-(3-Bromothiophene-2-yl)-3-(1, 3-Benzodioxol-5-yl)Prop-2-en-1-One Molecule. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2127802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/07/2022]
Affiliation(s)
- K. Anitha
- Department of Physics, SRM Institute of Science and Technology, Chennai, Tamil Nadu, India
| | - A. Nataraj
- Department of Physics, SRM Institute of Science and Technology, Chennai, Tamil Nadu, India
| | - Badiadka Narayana
- Department of Studies in Chemistry, Mangalore University, Mangalore, Karnataka, India
| | - T. Karthick
- Department of Physics, School of Electrical and Electronics Engineering, SASTRA Deemed University, Tanjavur, Tamil Nadu, India
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Jeyavijayan S, Ramuthai M, Murugan P. Quantum Chemical Investigation, Electronic Properties, Docking, and ADMET Studies on p-(2-Bromoethoxy) Anisole as Breast Cancer Agent. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2125991] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
Affiliation(s)
- S. Jeyavijayan
- Department of Physics, Kalasalingam Academy of Research and Education, Krishnankoil, India
| | - M. Ramuthai
- Department of Physics, Kalasalingam Academy of Research and Education, Krishnankoil, India
| | - Palani Murugan
- Department of Physics, Dr. B.R. Ambedkar Institute of Technology, Port Blair, India
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Feride Akman, Kazachenko AS, Issaoui N. DFT Calculations of Some Important Radicals Used in the Nitroxide-Mediated Polymerization and Their HOMO‒LUMO, Natural Bond Orbital, and Molecular Electrostatic Potential Comparative Analysis. POLYMER SCIENCE SERIES B 2022. [DOI: 10.1134/s156009042270035x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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16
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Feride Akman, Kazachenko AS, Issaoui N. DFT Calculations of Some Important Radicals Used in the Nitroxide-Mediated Polymerization and Their HOMO‒LUMO, Natural Bond Orbital, and Molecular Electrostatic Potential Comparative Analysis. POLYMER SCIENCE SERIES B 2022. [DOI: doi.org/10.1134/s156009042270035x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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17
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Veena K, Chandrasekhar S, Raghu M, Yogesh Kumar K, Pradeep Kumar C, Alswieleh AM, Anusuya Devi V, Prashanth M, Jeon BH. Facile green synthesis of samarium sesquioxide nanoparticle as a quencher for biologically active imidazole analogues: Computational and experimental insights. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133235] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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18
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Prabhu AAM, Madi F, Leila N, Kumar GSS, Sathiyaseelan K. Structural Aspects and Stability of Interactions between Phenyl-3,3'-Bis(Indolyl)Methanes and β-Cyclodextrin from Density Functional Theory. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2101490] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
Affiliation(s)
| | - Fatiha Madi
- Laboratory of Computational Chemistry and Nanostructures, Department of Material Sciences, Faculty of Mathematical, Informatics and Material Sciences, University of 08 Mai 1945, Guelma, Algeria
| | - Nouar Leila
- Laboratory of Computational Chemistry and Nanostructures, Department of Material Sciences, Faculty of Mathematical, Informatics and Material Sciences, University of 08 Mai 1945, Guelma, Algeria
| | - G. S. Suresh Kumar
- Photosciences and Photonics Section, Chemical Sciences and Technology Division, CSIR-National Institute for Interdisciplinary Science and Technology (CSIR-NIIST), Thiruvananthapuram, India
| | - K. Sathiyaseelan
- Department of PG Chemistry, Aditanar College of Arts and Science, Tiruchendur, India
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Malyar YN, Kazachenko A, Vasilyeva NY, Fetisova OY, Borovkova V, Miroshnikova A, Levdansky A, Skripnikov A. Sulfation of wheat straw soda lignin: Role of solvents and catalysts. Catal Today 2022. [DOI: 10.1016/j.cattod.2021.07.033] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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20
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R A, C S, A P, R K. Spectroscopic and Molecular Docking Studies of a Novel Biologically Active Heterocyclic Compound 2-Chloro-6-Methoxypyridine-4-Carboxylic Acid by Quantum Computational Method. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2102664] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
Affiliation(s)
- Arivazhagan R
- Department of Physics, Thiruvalluvar Govt. Arts College, Rasipuram, India
| | - Sridevi C
- Department of Physics, Sri Sarada College for Women (Autonomous), Salem, India
| | - Prakasam A
- Department of Physics, Thiruvalluvar Govt. Arts College, Rasipuram, India
| | - Kumar R
- Department of Physics, Banaras Hindu University, Varanasi, India
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Thirunavukkarasu M, Balaji G, Prabakaran P, Basha SJ, Irfan A, Javed SS, Muthu S. Spectral characterization, solvation effects on topological aspects, and biological attributes of Fmoc-L-glutamic acid 5-tert-butyl ester: An effective reagent in anticancer evaluations. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133793] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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22
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Shiny CL, Rathika A, Tarika JDD, Alen S, Beaula TJ. Effect of Charge Transfer and Non-Covalent Interactions of the Synthesized NLO Compound p-Nitrophenol Sodium-Bisulfate Using DFT Method. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2092876] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- C. L. Shiny
- Department of Physics and Research Centre, Malankara Catholic College, Mariagiri, Tamilnadu, India
- Manonmaniam Sundaranar University, Tirunelveli, Tamilnadu, India
| | - A. Rathika
- Manonmaniam Sundaranar University, Tirunelveli, Tamilnadu, India
- Department of Physics and Research Centre, Muslim Arts College, Tiruvithancode, Tamilnadu, India
| | - J. D. Deephlin Tarika
- Department of Physics and Research Centre, Malankara Catholic College, Mariagiri, Tamilnadu, India
- Manonmaniam Sundaranar University, Tirunelveli, Tamilnadu, India
| | - S. Alen
- Department of Physics and Research Centre, St.Cyril’s College, Adoor, Pathanamthitta, Kerala, India
| | - T. Joselin Beaula
- Department of Physics and Research Centre, Malankara Catholic College, Mariagiri, Tamilnadu, India
- Manonmaniam Sundaranar University, Tirunelveli, Tamilnadu, India
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23
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Ajaz K. Kirmani S, Ali P, Azam F, Kuznetsov A, Alvi P. Structure and electronic properties of the HA-CUR conjugate: an insight from the DFT perspective. COMPUT THEOR CHEM 2022. [DOI: 10.1016/j.comptc.2022.113761] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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24
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Structural, spectroscopic, and in silico studies of 3-(dimethylamino)-1-(thiophen-2-yl)propan-1-ol: A potential antidepressant agent. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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25
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Ahamed JI, Ramkumaar G, Kamalarajan P, Narendran K, Valan M, Sundareswaran T, Sundaravadivel T, Venkatadri B, Bharathi S. Novel quinoxaline derivatives of 2, 3-diphenylquinoxaline-6-carbaldehyde and 4, 4′-(6-methylquinoxaline-2,3-diyl)bis(N,N-diphenylaniline): Synthesis, structural, DFT-computational, molecular docking, antibacterial, antioxidant, and anticancer studies. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131418] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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26
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Saral A, Sudha P, Muthu S, Sevvanthi S, Irfan A. Molecular structure spectroscopic Elucidation, IEFPCM solvation (UV–Vis, MEP, FMO, NBO, NLO), molecular docking and biological assessment studies of lepidine (4-Methylquinoline). J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.118249] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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27
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Alnoman RB, Parveen S, Khan A, Knight JG, Hagar M. New quinoline-based BODIPYs as EGFR/VEGFR-2 inhibitors: Molecular docking, DFT and in vitro cytotoxicity on HeLa cells. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131312] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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28
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Al-Otaibi JS, Mary YS, Mary YS, Yadav R. Structural and reactivity studies of pravadoline –An ionic liquid, with reference to its wavefunction-relative properties using DFT and MD simulation. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.131074] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Kazachenko AS, Vasilieva NY, Borovkova VS, Fetisova OY, Issaoui N, Malyar YN, Elsuf’ev EV, Karacharov AA, Skripnikov AM, Miroshnikova AV, Kazachenko AS, Zimonin DV, Ionin VA. Food Xanthan Polysaccharide Sulfation Process with Sulfamic Acid. Foods 2021; 10:2571. [PMID: 34828852 PMCID: PMC8620577 DOI: 10.3390/foods10112571] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Revised: 10/15/2021] [Accepted: 10/20/2021] [Indexed: 01/18/2023] Open
Abstract
Xanthan is an important polysaccharide with many beneficial properties. Sulfated xanthan derivatives have anticoagulant and antithrombotic activity. This work proposes a new method for the synthesis of xanthan sulfates using sulfamic acid. Various N-substituted ureas have been investigated as process activators. It was found that urea has the greatest activating ability. BBD of xanthan sulfation process with sulfamic acid in 1,4-dioxane has been carried out. It was shown that the optimal conditions for the sulfation of xanthan (13.1 wt% sulfur content) are: the amount of sulfating complex per 1 g of xanthan is 3.5 mmol, temperature 90 °C, duration 2.3 h. Sulfated xanthan with the maximum sulfur content was analyzed by physicochemical methods. Thus, in the FTIR spectrum of xanthan sulfate, in comparison with the initial xanthanum, absorption bands appear at 1247 cm-1, which corresponds to the vibrations of the sulfate group. It was shown by GPC chromatography that the starting xanthan gum has a bimodal molecular weight distribution of particles, including a high molecular weight fraction with Mw > 1000 kDa and an LMW fraction with Mw < 600 kDa. It was found that the Mw of sulfated xanthan gum has a lower value (~612 kDa) in comparison with the original xanthan gum, and a narrower molecular weight distribution and is characterized by lower PD values. It was shown by thermal analysis that the main decomposition of xanthan sulfate, in contrast to the initial xanthan, occurs in two stages. The DTG curve has two pronounced peaks, with maxima at 226 and 286 °C.
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Affiliation(s)
- Aleksandr S. Kazachenko
- Institute of Non-Ferrous Metals and Materials Science, Siberian Federal University, pr. Svobodny 79, 660041 Krasnoyarsk, Russia; (N.Y.V.); (V.S.B.); (Y.N.M.); (A.M.S.); (A.V.M.); (A.S.K.); (D.V.Z.); (V.A.I.)
- FRC “Krasnoyarsk Science Center”, Institute of Chemistry and Chemical Technology, Siberian Branch, Russian Academy of Sciences, Akademgorodok 50/24, 660036 Krasnoyarsk, Russia; (O.Y.F.); (E.V.E.); (A.A.K.)
| | - Natalya Yu. Vasilieva
- Institute of Non-Ferrous Metals and Materials Science, Siberian Federal University, pr. Svobodny 79, 660041 Krasnoyarsk, Russia; (N.Y.V.); (V.S.B.); (Y.N.M.); (A.M.S.); (A.V.M.); (A.S.K.); (D.V.Z.); (V.A.I.)
- FRC “Krasnoyarsk Science Center”, Institute of Chemistry and Chemical Technology, Siberian Branch, Russian Academy of Sciences, Akademgorodok 50/24, 660036 Krasnoyarsk, Russia; (O.Y.F.); (E.V.E.); (A.A.K.)
| | - Valentina S. Borovkova
- Institute of Non-Ferrous Metals and Materials Science, Siberian Federal University, pr. Svobodny 79, 660041 Krasnoyarsk, Russia; (N.Y.V.); (V.S.B.); (Y.N.M.); (A.M.S.); (A.V.M.); (A.S.K.); (D.V.Z.); (V.A.I.)
- FRC “Krasnoyarsk Science Center”, Institute of Chemistry and Chemical Technology, Siberian Branch, Russian Academy of Sciences, Akademgorodok 50/24, 660036 Krasnoyarsk, Russia; (O.Y.F.); (E.V.E.); (A.A.K.)
| | - Olga Yu. Fetisova
- FRC “Krasnoyarsk Science Center”, Institute of Chemistry and Chemical Technology, Siberian Branch, Russian Academy of Sciences, Akademgorodok 50/24, 660036 Krasnoyarsk, Russia; (O.Y.F.); (E.V.E.); (A.A.K.)
| | - Noureddine Issaoui
- Laboratory of Quantum and Statistical Physics (LR18ES18), Faculty of Sciences, University of Monastir, Monastir 5079, Tunisia;
| | - Yuriy N. Malyar
- Institute of Non-Ferrous Metals and Materials Science, Siberian Federal University, pr. Svobodny 79, 660041 Krasnoyarsk, Russia; (N.Y.V.); (V.S.B.); (Y.N.M.); (A.M.S.); (A.V.M.); (A.S.K.); (D.V.Z.); (V.A.I.)
- FRC “Krasnoyarsk Science Center”, Institute of Chemistry and Chemical Technology, Siberian Branch, Russian Academy of Sciences, Akademgorodok 50/24, 660036 Krasnoyarsk, Russia; (O.Y.F.); (E.V.E.); (A.A.K.)
| | - Evgeniy V. Elsuf’ev
- FRC “Krasnoyarsk Science Center”, Institute of Chemistry and Chemical Technology, Siberian Branch, Russian Academy of Sciences, Akademgorodok 50/24, 660036 Krasnoyarsk, Russia; (O.Y.F.); (E.V.E.); (A.A.K.)
| | - Anton A. Karacharov
- FRC “Krasnoyarsk Science Center”, Institute of Chemistry and Chemical Technology, Siberian Branch, Russian Academy of Sciences, Akademgorodok 50/24, 660036 Krasnoyarsk, Russia; (O.Y.F.); (E.V.E.); (A.A.K.)
| | - Andrey M. Skripnikov
- Institute of Non-Ferrous Metals and Materials Science, Siberian Federal University, pr. Svobodny 79, 660041 Krasnoyarsk, Russia; (N.Y.V.); (V.S.B.); (Y.N.M.); (A.M.S.); (A.V.M.); (A.S.K.); (D.V.Z.); (V.A.I.)
- FRC “Krasnoyarsk Science Center”, Institute of Chemistry and Chemical Technology, Siberian Branch, Russian Academy of Sciences, Akademgorodok 50/24, 660036 Krasnoyarsk, Russia; (O.Y.F.); (E.V.E.); (A.A.K.)
| | - Angelina V. Miroshnikova
- Institute of Non-Ferrous Metals and Materials Science, Siberian Federal University, pr. Svobodny 79, 660041 Krasnoyarsk, Russia; (N.Y.V.); (V.S.B.); (Y.N.M.); (A.M.S.); (A.V.M.); (A.S.K.); (D.V.Z.); (V.A.I.)
- FRC “Krasnoyarsk Science Center”, Institute of Chemistry and Chemical Technology, Siberian Branch, Russian Academy of Sciences, Akademgorodok 50/24, 660036 Krasnoyarsk, Russia; (O.Y.F.); (E.V.E.); (A.A.K.)
| | - Anna S. Kazachenko
- Institute of Non-Ferrous Metals and Materials Science, Siberian Federal University, pr. Svobodny 79, 660041 Krasnoyarsk, Russia; (N.Y.V.); (V.S.B.); (Y.N.M.); (A.M.S.); (A.V.M.); (A.S.K.); (D.V.Z.); (V.A.I.)
| | - Dmitry V. Zimonin
- Institute of Non-Ferrous Metals and Materials Science, Siberian Federal University, pr. Svobodny 79, 660041 Krasnoyarsk, Russia; (N.Y.V.); (V.S.B.); (Y.N.M.); (A.M.S.); (A.V.M.); (A.S.K.); (D.V.Z.); (V.A.I.)
- FRC “Krasnoyarsk Science Center”, Institute of Chemistry and Chemical Technology, Siberian Branch, Russian Academy of Sciences, Akademgorodok 50/24, 660036 Krasnoyarsk, Russia; (O.Y.F.); (E.V.E.); (A.A.K.)
| | - Vladislav A. Ionin
- Institute of Non-Ferrous Metals and Materials Science, Siberian Federal University, pr. Svobodny 79, 660041 Krasnoyarsk, Russia; (N.Y.V.); (V.S.B.); (Y.N.M.); (A.M.S.); (A.V.M.); (A.S.K.); (D.V.Z.); (V.A.I.)
- FRC “Krasnoyarsk Science Center”, Institute of Chemistry and Chemical Technology, Siberian Branch, Russian Academy of Sciences, Akademgorodok 50/24, 660036 Krasnoyarsk, Russia; (O.Y.F.); (E.V.E.); (A.A.K.)
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Shanmugapriya N, Balachandran V, Revathi B, Narayana B, Salian VV, Vanasundari K, Sivakumar C. Quantum chemical calculation, performance of selective antimicrobial activity using molecular docking analysis, RDG and experimental (FT-IR, FT-Raman) investigation of 4-[{2-[3-(4-chlorophenyl)-5-(4-propan-2-yl) phenyl)-4, 5-dihydro- 1H- pyrazol-1-yl]-4-oxo-1, 3- thiazol-5(4H)-ylidene} methyl] benzonitrile. Heliyon 2021; 7:e07634. [PMID: 34381897 PMCID: PMC8339246 DOI: 10.1016/j.heliyon.2021.e07634] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2020] [Revised: 12/27/2020] [Accepted: 07/19/2021] [Indexed: 11/29/2022] Open
Abstract
The research received a great deal of worldwide attention due to the nature of interpretation before the experimental process. Based on the systematic process the structure of thiazole -pyrazole compound 4-[{2-[3-(4-chlorophenyl)-5-(4-propan-2-yl) phenyl)-4, 5-dihydro- 1H- pyrazol-1-yl]-4-oxo-1, 3- thiazol-5(4H)-ylidene} methyl] benzonitrile [CPTBN] was investigated. In the first level, the spectral statistics on experimental FT-IR and FT- Raman was reported. At the next level, geometrical parameters was theoretically acquired from density functional theory (DFT) using B3LPY/6-31G and 6-311G basis set. The computed Wavenumber were collected and compared with the experimental data. The vibrational modes were interpreted in terms of potential energy distribution (PED) results. The FMO, MEP, and NBO analysis further validated the electrophilic and nucleophilic interaction in the molecular systems. Two grams-positive bacteria: staphylococcus aureus, Bacillus subtilis and two gram-negative bacteria: Esherichia coli, Pseudomonas aeruginosa was performed for antibacterial activity. Two fungal strain Candida albicans and Aspergillus Niger was carried out against a ligand using anti-fungal activity. The molecular docking analysis explores the antimicrobial and selective potential inhibitory nature of the binding molecule. Besides, RDG and ELF analysis were also performed to show the nature of interactions between the molecule.
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Affiliation(s)
- N. Shanmugapriya
- Centre for Research, Department of Physics, Arignar Anna Government Arts College (Affiliated to Bharathidasan University), Tiruchirappalli, Musiri, 621 211, India
| | - V. Balachandran
- Centre for Research, Department of Physics, Arignar Anna Government Arts College (Affiliated to Bharathidasan University), Tiruchirappalli, Musiri, 621 211, India
| | - B. Revathi
- Centre for Research, Department of Physics, Arignar Anna Government Arts College (Affiliated to Bharathidasan University), Tiruchirappalli, Musiri, 621 211, India
| | - B. Narayana
- Department of Studies in Chemistry, Mangalore University, Mangalagangotri, 574 199, India
| | - Vinutha V. Salian
- Department of Studies in Chemistry, Mangalore University, Mangalagangotri, 574 199, India
| | - K. Vanasundari
- Centre for Research, Department of Physics, Arignar Anna Government Arts College (Affiliated to Bharathidasan University), Tiruchirappalli, Musiri, 621 211, India
| | - C. Sivakumar
- Centre for Research, Department of Physics, Arignar Anna Government Arts College (Affiliated to Bharathidasan University), Tiruchirappalli, Musiri, 621 211, India
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Mary YS, Mary YS, Rad AS, Yadav R, Celik I, Sarala S. Theoretical investigation on the reactive and interaction properties of sorafenib – DFT, AIM, spectroscopic and Hirshfeld analysis, docking and dynamics simulation. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.115652] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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Spectroscopic and molecular docking investigation of the binding of a bioactive mercaptobenzimidazole-functionalized Schiff base to human serum albumin. CHEMICAL PAPERS 2021. [DOI: 10.1007/s11696-021-01585-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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33
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Molecular machine based on Rotaxane@Tricyclic antidepressant carrier: Theoretical molecular dynamic simulation. COMPUT THEOR CHEM 2021. [DOI: 10.1016/j.comptc.2020.113138] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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34
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Manjusha P, Prasana JC, Muthu S, Rizwana BF. Spectroscopic elucidation (FT-IR, FT-Raman and UV-visible) with NBO, NLO, ELF, LOL, drug likeness and molecular docking analysis on 1-(2-ethylsulfonylethyl)-2-methyl-5-nitro-imidazole: An antiprotozoal agent. Comput Biol Chem 2020; 88:107330. [PMID: 32711354 DOI: 10.1016/j.compbiolchem.2020.107330] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2020] [Revised: 07/03/2020] [Accepted: 07/08/2020] [Indexed: 11/26/2022]
Abstract
1-(2-ethylsulfonylethyl)-2-methyl-5-nitro-imidazole (1EMI) C8H13N3O4S also known as Tinidazole, selected for its antiprotozoal property is extensively used for spectroscopic elucidations and computational aspects using density functional methods. Along with spectral conclusions, further investigations on fundamental reactive properties such as electrical, optical, nonlinear combined with DFT simulations were performed. Molecular docking procedure supports the results of chosen appropriate antiprotozoal agent based on ligand-protein interactions. Experimental and simulated (B3LYP/6-311++G (d,p)) IR and Raman spectra showed concurrence. NLO analysis through first order hyperpolarizability parameter helps in finding the potential of 1EMI as a good NLO candidate. Charge delocalization and the stability of the compound were discussed using natural bond orbital (NBO) analysis. Furthermore, Electron localization function (ELF), local orbital locator (LOL), and Frontier molecular orbitals (FMO) were studied. Besides, Mulliken population analysis on atomic charges, Energy gap, chemical potential, global hardness, softness, ionization potential, electronegativity, electrophilicity index along thermodynamic parameters (enthalpy, entropy and heat capacity) have been calculated. Drug likeness parameters and molecular docking approach enabled to check pharmaceutical potential and biological activity of 1EMI. The biological activity of 1EMI through ligand and protein interactions have been confirmed theoretically for the treatment of Malaria, Invasive aspergillosis and Mycobacterium tuberculosis with respect to chosen proteins. Three different activity targets and protein interactions are quite successful revealing the bond distances, intermolecular energy, binding energy and inhibition constant. 2D interaction profile image of the two maximum interacted proteins and also Ramachandran plot used to show stereochemistry of selected protein. The activities of 1EMI were studied in accordance with literature survey and the results were presented.
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Affiliation(s)
- P Manjusha
- Department of Physics, S.D.N.B Vaishnav College for Women, Chromepet, Chennai, 600 044, Tamilnadu, India; Department of Physics, Madras Christian College, Chennai, 600 059, Tamilnadu, India; University of Madras, Chepauk, Chennai, 600 005, Tamilnadu, India
| | | | - S Muthu
- Department of Physics, Arignar Anna Government Arts College, Cheyyar, 604 407, Tamilnadu, India; Department of Physics, Puratchi Thalaivar Dr.M.G.R Govt. Arts and Science College, Uthiramerur, 603406, Tamilnadu, India.
| | - B Fathima Rizwana
- Department of Physics, Madras Christian College, Chennai, 600 059, Tamilnadu, India
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Potla KM, Poojith N, Osório FA, Valverde C, Chinnam S, Suchetan P, Vankayalapati S. An analysis of spectroscopic, computational and biological activity studies of L-shaped sulfamoylbenzoic acid derivatives: A third order nonlinear optical material. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128070] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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36
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Viji A, Balachandran V, Babiyana S, Narayana B, Saliyan VV. Molecular docking and quantum chemical calculations of 4-methoxy-{2-[3-(4-chlorophenyl)-5-(4-(propane-2-yl) PHENYL)-4, 5-dihydro-1H-pyrazol-1-yl]- 1, 3-thiazol-4-yl}phenol. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127452] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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Saji RS, Prasana JC, Muthu S, George J, Kuruvilla TK, Raajaraman BR. Spectroscopic and quantum computational study on naproxen sodium. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 226:117614. [PMID: 31606674 DOI: 10.1016/j.saa.2019.117614] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2019] [Revised: 06/05/2019] [Accepted: 10/06/2019] [Indexed: 06/10/2023]
Abstract
The spectroscopic (FT-IR, FT-Raman, NMR), electronic (UV--Vis.), structural and thermodynamical properties of an anti-inflammatory analgesic called Naproxen Sodium, (s)-6-methoxy-α-methyl-2-naphthaleneacetic acid sodium salt are submitted by using both experimental techniques and theoretical methods as quantum chemical calculations in this work. The equilibrium geometry and vibrational spectra are calculated by using DFT (B3LYP) with 6-311++G (d,p) basis set using GAUSSIAN 09. The vibrational wavenumbers are also corrected with scale factor to take better results for the calculated data. The HOMO-LUMO calculations are carried out on the title compound. The theoretical and experimental NMR peaks were found to be in good agreement. In addition, the detailed study on the Non-Bonding Orbitals, the excitation energies, AIM charges, condensed fukui calculations, thermodynamical properties, Localized Orbital Locator (LOL) and Electron Localization Function (ELF) are also performed. Furthermore, the study is extended to calculate the first order hyperpolarizability and to predict its NLO properties. The docking studies details helped on predicting the binding with different proteins.
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Affiliation(s)
- Rinnu Sara Saji
- Department of Physics, Madras Christian College, East Tambaram, 600059, Tamil Nadu, India; University of Madras, Chennai, 600005, Tamilnadu, India
| | | | - S Muthu
- Department of Physics, Arignar Anna Government Arts College, Cheyyar, 604407, Tamil Nadu, India.
| | - Jacob George
- Department of Physics, Madras Christian College, East Tambaram, 600059, Tamil Nadu, India
| | - Tintu K Kuruvilla
- Department of Physics, Madras Christian College, East Tambaram, 600059, Tamil Nadu, India
| | - B R Raajaraman
- Department of Physics, Sri Venkateswara College of Engineering, Sriperumbudur, 602 117, Tamil Nadu, India
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Erkan S, Kaya S, Sayin K, Karakaş D. Structural, spectral characterization and molecular docking analyses of mer-ruthenium (II) complexes containing the bidentate chelating ligands. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 224:117399. [PMID: 31344575 DOI: 10.1016/j.saa.2019.117399] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2019] [Revised: 07/16/2019] [Accepted: 07/17/2019] [Indexed: 06/10/2023]
Abstract
In this study, we analyzed some monofunctional Ru (II) complexes containing chlorine, bromine and fluorine atoms around the central atom. The best calculation level among HF, B3LYP and M062X methods for [Ru (Cl-Ph-tpy)(NN)X]+ (X = F, Cl, Br) was determined in the light of Benchmark analysis and according to this analysis results, the best level is shown as B3LYP-LANL2DZ/6-31G(d). In addition to this, the spectroscopic data (IR, NMR and UV-Vis) were also obtained in agreement with experimental results. The tendency of anticancer activity and structural activity relationship (SAR) parameters are predicted with some quantum chemical methods. Surface and contour diagrams, as well as electron densities on mentioned complexes were interpreted through theoretically obtained results. Finally, the anticancer activity tendency of the relevant complexes on the human cervical carcinoma cell line (ID: 1 M17) is supported by molecular docking calculations.
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Affiliation(s)
- Sultan Erkan
- Sivas Cumhuriyet University Yıldızeli Vocational School, Department of Chemistry and Chemical Processing Technologies, 58140 Sivas, Turkey.
| | - Serpil Kaya
- Department of Chemistry, Faculty of Science, Sivas Cumhuriyet University, 58140 Sivas, Turkey
| | - Koray Sayin
- Department of Chemistry, Faculty of Science, Sivas Cumhuriyet University, 58140 Sivas, Turkey; Sivas Cumhuriyet University Advanced Research and Application Center (CUTAM), 58140 Sivas, Turkey.
| | - Duran Karakaş
- Department of Chemistry, Faculty of Science, Sivas Cumhuriyet University, 58140 Sivas, Turkey
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Poojith N, Potla KM, Osório FAP, Valverde C, Vankayalapati S, Suchetan PA, Raja M. Y-shaped potential third-order nonlinear optical material – 3-(2-amino-2-oxoethyl)-5-methyl hexanoic acid: an analysis of structural, spectroscopic and docking studies. NEW J CHEM 2020. [DOI: 10.1039/d0nj02658a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The merit of this work is that it has clearly established the structure and the nonlinear optical properties relationship of the title molecule and it could be helpful for developing new nonlinear optical materials.
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Affiliation(s)
| | - Krishna Murthy Potla
- Department of Chemistry
- Bapatla Engineering College (Autonomous)
- Acharya Nagarjuna University Post Graduate Research Centre
- Bapatla-522 102
- India
| | - Francisco A. P. Osório
- Instituto de Física
- Universidade Federal de Goiás
- Goiânia
- Brazil
- Pontifícia Universidade Católica de Goiás
| | - Clodoaldo Valverde
- Laboratório de Modelagem Molecular Aplicada e Simulação (LaMMAS)
- Campus de Ciências Exatas e Tecnológicas
- Universidade Estadual de Goiás
- Anápolis
- Brazil
| | - Suneetha Vankayalapati
- Sri Ramachandra Institute of Higher Education and Research
- Chennai
- India
- Department of Chemistry
- Bapatla College of Arts and Sciences
| | - P. A. Suchetan
- Department of Studies and Research in Chemistry
- University College of Science
- Tumkur University
- Tumkur-572 103
- India
| | - M. Raja
- Department of Physics
- Govt. Thirumagal Mills College
- Vellore
- India
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