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Danish M, Liaquat T, Ashraf F, Zaman S. Predictive modeling and regression analysis of diverse sulfonamide compounds employed in cancer therapy. Front Chem 2024; 12:1413850. [PMID: 38860237 PMCID: PMC11163099 DOI: 10.3389/fchem.2024.1413850] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Accepted: 05/08/2024] [Indexed: 06/12/2024] Open
Abstract
Topological indices (TIs) have rich applications in various biological contexts, particularly in therapeutic strategies for cancer. Predicting the performance of compounds in the treatment of cancer is one such application, wherein TIs offer insights into the molecular structures and related properties of compounds. By examining, various compounds exhibit different degree-based TIs, analysts can pinpoint the treatments that are most efficient for specific types of cancer. This paper specifically delves into the topological indices (TIs) implementations in forecasting the biological and physical attributes of innovative compounds utilized in addressing cancer through therapeutic interventions. The analysis being conducted to derivatives of sulfonamides, namely, 4-[(2,4-dichlorophenylsulfonamido)methyl]cyclohexanecarboxylic acid (1), ethyl 4-[(naphthalene-2-sulfonamido)methyl]cyclohexanecarboxylate (2), ethyl 4-[(2,5-dichlorophenylsulfonamido)methyl]cyclohexanecarboxylate (3), 4-[(naphthalene-2-sulfonamido)methyl]cyclohexane-1-carboxylic acid (4) and (2S)-3-methyl-2-(naphthalene-1-sulfonamido)-butanoic acid (5), is performed by utilizing edge partitioning for the computation of degree-based graph descriptors. Subsequently, a linear regression-based model is established to forecast characteristics, like, melting point and formula weight in a quantitative structure-property relationship. The outcomes emphasize the effectiveness or capability of topological indices as a valuable asset for inventing and creating of compounds within the realm of cancer therapy.
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Affiliation(s)
- Muhammad Danish
- Department of Chemistry, University of Sialkot, Sialkot, Pakistan
| | - Tehreem Liaquat
- Department of Chemistry, University of Sialkot, Sialkot, Pakistan
| | - Farwa Ashraf
- Department of Chemistry, University of Sialkot, Sialkot, Pakistan
| | - Shahid Zaman
- Department of Mathematics, University of Sialkot, Sialkot, Pakistan
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2
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Raza MA, Farwa U, Ashraf A, Berrin Poyraz E, Yesilbag S, Agar E, Al-Sehemi AG. Synthesis, crystal structure, spectroscopic and computational investigations of the newly synthesized Schiff bases scaffold as enzyme inhibitor. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 299:122864. [PMID: 37244023 DOI: 10.1016/j.saa.2023.122864] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Revised: 05/04/2023] [Accepted: 05/10/2023] [Indexed: 05/29/2023]
Abstract
The current project was planned to access the enzyme inhibition potential of the synthesize imines; (E)-2-(2-hydroxy-4,5-dimethoxybenzylideneamino)benzonitrile 1 and (E)-2-(((3-hydroxy-4-methylphenyl)imino)methyl)-4-methoxyphenol 2 by the reported protocol of our continuous research and also assess their theoretical function in term of in silico action. The structural characterization of imines was done through advanced techniques i.e., FTIR, 1H NMR, 13C NMR, and UV spectroscopy. Moreover, a single X-Ray diffraction technique (SCXRD) was employed for real structural identification of imines dimensions, which revealed that compound 1 has a triclinic crystal system although 2 has a monoclinic one. A 2D fingerprint plot and Hirshfeld surface analysis (HS) was employed in the crystalline assembly of compounds to check intermolecular contacts and also their degree of contributions. Both compounds were optimized by B3LYP functional mode using a certain basis set (6-31G). The practical data (XRD) and theoretical data (DFT) of both molecules were compared and found between a sound coherence. Molecular docking studies in term of in silico assessment were conducted against enzymes of the esterase and alpha-glucosidase family. The docking outputs give a forecast about compounds that could be employed as protein inhibitors against analyzed protein surfaces.
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Affiliation(s)
- Muhammad Asam Raza
- Department of Chemistry, Hafiz Hayat Campus, University of Gujrat, Gujrat, Pakistan.
| | - Umme Farwa
- Department of Chemistry, Hafiz Hayat Campus, University of Gujrat, Gujrat, Pakistan
| | - Adnan Ashraf
- Department of Chemistry, The University of Lahore, Lahore, Pakistan
| | - Emine Berrin Poyraz
- Department of Physics, Faculty of Sciences, Ondokuz Mayis University, Samsun, Turkey
| | - Semanur Yesilbag
- Department of Chemistry, Faculty of Arts and Sciences, Ondokuz Mayis University, Samsun, Turkey
| | - Erbil Agar
- Department of Chemistry, Faculty of Arts and Sciences, Ondokuz Mayis University, Samsun, Turkey
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Raza MA, Farwa U, Danish M, Ozturk S, Aagar AA, Dege N, Rehman SU, Al-Sehemi AG. Computational modeling of imines based anti-oxidant and anti-esterases compounds: Synthesis, single crystal and In-vitro assessment. Comput Biol Chem 2023; 104:107880. [PMID: 37196604 DOI: 10.1016/j.compbiolchem.2023.107880] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Revised: 05/04/2023] [Accepted: 05/06/2023] [Indexed: 05/19/2023]
Abstract
Molecular modeling strategy was adopted to check the biological potential of the imine based molecules against free radical, acetylcholine esterase and butyrylcholine esterase. Three Schiff based compounds as (E)-2-(((4-bromophenyl)imino)methyl)-4-methylphenol (1), (E)-2-(((3-fluorophenyl)imino)methyl)-4-methylphenol (2) and (2E,2E)-2-(2-(2-hydroxy-5-methylbenzylidene)hydrazono)-1,2-diphenylethanone (3) were synthesized with high yield. The synthesized compounds were characterized with the help of modern techniques such as UV, FTIR and NMR while exact structure was depicted with Single Crystal X-Ray diffraction technique which disclosed that compound 1 is orthorhombic, while 2 and 3 are monoclinic. A hybrid functional (B3LYP) method with general basis set of 6-31 G(d,p) were applied to optimize synthesized Schiff bases. The contribution of in-between molecular contacts within a crystalline assembly of compounds were studied using Hirshfeld surface analysis (HS). In order to check the ability of the synthesized compounds toward free radical and enzyme inhibition, in vitro models were used to assess the radical scavenging and enzyme inhibition potential which depicted that compound 3 showed highest potential (57.43 ± 1.0%; DPPH, 75.09 ± 1.0%; AChE and 64.47 ± 1.0%; BChE). The ADMET assessments suggested the drug like properties of the synthesized compounds. It was concluded from results (in vitro and in silico) that synthesized compound have ability to cure the disorder related to free radical and enzyme inhibition. Compound 3 was shown to be the most active compared to other compounds.
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Affiliation(s)
- Muhammad Asam Raza
- Department of Chemistry, Hafiz Hayat Campus, University of Gujrat, Gujrat, Pakistan.
| | - Umme Farwa
- Department of Chemistry, Hafiz Hayat Campus, University of Gujrat, Gujrat, Pakistan
| | - Muhammad Danish
- Department of Chemistry, University of Sialkot, Sialkot 51310, Pakistan
| | - Seyhan Ozturk
- Department of Chemistry, Ondokuz Mayis University, Faculty of Arts and Sciences, Samsun, Turkey
| | - Aysen Alaman Aagar
- Department of Chemistry, Ondokuz Mayis University, Faculty of Arts and Sciences, Samsun, Turkey
| | - Necmi Dege
- Department of Physics, Ondokuz Mayis University, Faculty of Arts and Sciences, Samsun, Turkey
| | - Shafiq Ur Rehman
- Department of Chemistry, University of Central Punjab, Lahore, Pakistan
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Nashre-ul-Islam SM, Borah KK, Raza MA, Öztürkkan FE. Molecular docking with SARS-CoV-2 and potential drug property of a bioactive novel Zn(II) polymer: A combined experimental and theoretical study. Polyhedron 2023; 233:116304. [PMID: 36710999 PMCID: PMC9859646 DOI: 10.1016/j.poly.2023.116304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Revised: 01/04/2023] [Accepted: 01/18/2023] [Indexed: 01/22/2023]
Abstract
A new Zn(II) coordination polymer based on o-phthalato (Phth) and 2-aminopyridine (2-Ampy) viz. {[Zn(2-Ampy)2(Phth)]∙(H2O)]}n (1) has been synthesized at room temperature and characterized by elemental analyses, electronic spectroscopy, FT-IR spectroscopy, thermal analysis (TGA/DSC), powder X-ray diffraction (PXRD) and single crystal X-ray diffraction. The basic trimeric units of 1 form a polymeric chain by N-H⋯O and π⋯π interactions. These polymeric chains interconnect through various non-covalent interactions in two perpendicular directions to ultimately give rise to a 3D architecture of 1. The interesting non-covalent interactions in 1, contributing to its stability in the solid state are studied by Hirshfeld surface analysis and other different theoretical tools. Molecular docking study of 1 is performed against six different proteins of SARS-CoV-2. The drug potential of the synthesized compound is evaluated by ADMET calculations.
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Affiliation(s)
| | | | - Muhammad Asam Raza
- Department of Chemistry, Hafiz Hayat Campus, University of Gujrat, Gujrat, Pakistan
| | - Füreya Elif Öztürkkan
- Department of Chemical Engineering, Kafkas University, Kars, Turkey,Corresponding authors
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5
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Ali F, Akbar S, Sillanpaa M, Younas U, Ashraf A, Pervaiz M, Kausar R, Ahmad I, Alothman AA, Ouladsmane M. Recyclable Cu-Ag bimetallic nanocatalyst for radical scavenging, dyes removal and antimicrobial applications. CHEMOSPHERE 2023; 313:137321. [PMID: 36410518 DOI: 10.1016/j.chemosphere.2022.137321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2022] [Revised: 10/26/2022] [Accepted: 11/17/2022] [Indexed: 06/16/2023]
Abstract
An ecofriendly and cost effective green method has been used for the synthesis of recyclable, high functional nanoparticles. Bimetallic nanoparticles (BmNPs), Cu-Ag, have been synthesized using beetroot extract as reducing and capping agent. Formation of BmNPs was initially confirmed by UV-visible analysis, having distinct peaks of Ag at 429 nm and Cu at 628 nm. FTIR analysis also confirmed the association of bioactive phytochemicals with Cu-Ag nanoparticles. Crystallinity and morphology of BmNPs was determined through X-ray diffraction (XRD), field emission scanning electron microscopy (FE-SEM), dynamic light scattering (DLS) and energy dispersion X-ray spectroscopy (EDAX). The size of spherical shape Cu-Ag BmNPs was found to be 75.58 nm and EDAX studies confirmed the percent elemental composition of Cu and Ag in synthesized nanocatalyst. Results of different analysis provided supported evidences regarding the formation of BmNPs. Catalytic potential of BmNPs was tested for the degradation of rhodamine B (Rh-B), methylene blue (MB) and methyl orange (MO) dyes. Cu-Ag BmNPs exhibited outstanding catalytic activity for the degradation of selected organic dyes and percent degradation was recorded more than 90% for each dye. In addition, antiradical property of BmNPs was tested employing DPPH● and ABTS●+ assays and it was found to be promising. Synthesized BmNPs also exhibited strong antimicrobial activity against Salmonella typhimurium and Bacillus subtilis. Recyclability of nanoparticles was also evaluated and recovery from dye degradation reaction mixture was successfully achieved. The recovered nanoparticles exhibited same catalytic potential for the degradation of Rh-B. The objective of the current study was to synthesize BmNPs Cu-Ag employing a cost effective green method having promising catalytic, antiradical and antimicrobial potential. Further, BmNPs were reused after recovery from catalytic reactions, proving that BmNPs can be recycled having the same efficiency as that of a freshly prepared Cu-Ag BmNPs.
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Affiliation(s)
- Faisal Ali
- Department of Chemistry, The University of Lahore, Lahore, Pakistan
| | - Sadia Akbar
- Department of Chemistry, The University of Lahore, Lahore, Pakistan
| | - Mika Sillanpaa
- Department of Chemical Engineering, School of Mining, Metallurgy and Chemical Engineering, University of Johannesburg, P. O. Box 17011, Doornfontein, 2028, South Africa; Department of Biological and Chemical Engineering, Aarhus University, Nørrebrogade 44, 8000, Aarhus, Denmark
| | - Umer Younas
- Department of Chemistry, The University of Lahore, Lahore, Pakistan.
| | - Adnan Ashraf
- Department of Chemistry, The University of Lahore, Lahore, Pakistan.
| | - Muhammad Pervaiz
- Department of Chemistry, Government College University, Lahore, Pakistan
| | - Rizwan Kausar
- Institute of Chemistry, University of Sargodha, Sargodha, Pakistan
| | - Ikram Ahmad
- Department of Chemistry, University of Sahiwal, Sahiwal, Pakistan
| | - Asma A Alothman
- Chemistry Department, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia
| | - Mohamed Ouladsmane
- Chemistry Department, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia
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6
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Ghased E, Lordejani HA, Vedaei M, Massah AR. Solvent-free synthesis and antibacterial evaluation of novel mercaptobenzenesulfonamides. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2022. [DOI: 10.1007/s13738-022-02712-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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7
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Ali F, Younas U, Nazir A, Hassan F, Iqbal M, Hamza BUZ, Mukhtar S, Khalid A, Ishfaq A. Biosynthesis and characterization of silver nanoparticles using strawberry seed extract and evaluation of their antibacterial and antioxidant activities. JOURNAL OF SAUDI CHEMICAL SOCIETY 2022. [DOI: 10.1016/j.jscs.2022.101558] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
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8
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Ashfaq M, Nawaz Tahir M, Munawar KS, Behjatmanesh-Ardakani R, Kargar H. Single crystal exploration, supramolecular behaviour, Hirshfeld surface analysis, linear and non-linear theoretical optical properties of Schiff bases derived from Benzene sulfonamides. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132952] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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9
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Synthesis, characterization, In-silico and In-vitro investigation of sulfonamide based esters. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132711] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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10
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Elangovan N, Sowrirajan S, Manoj K, Kumar AM. Synthesis, structural investigation, computational study, antimicrobial activity and molecular docking studies of novel synthesized (E)-4-((pyridine-4-ylmethylene)amino)-N-(pyrimidin-2-yl)benzenesulfonamide from pyridine-4-carboxaldehyde and sulfadiazine. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130544] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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11
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Enzyme inhibition and antioxidant potential of new synthesized sulfonamides; synthesis, single crystal and molecular docking. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130608] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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12
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Synthesis of two new Schiff bases; crystal structure, Hirshfeld surface analysis, density functional theory and molecular docking. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129330] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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13
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Synthesis, spectroscopic characterizations, carbonic anhydrase II inhibitory activity, anticancer activity and docking studies of new Schiff bases of sulfa drugs. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.128911] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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14
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Danish M, Raza MA, Iftikhar S, Mumtaz MW, Tahir MN, Rashid U, Ayub K. Synthesis, single-crystal X-ray diffraction, and in vitro biological evaluation of sodium, cobalt, and tin complexes of o-nitro-/o-methoxyphenylacetic acid: experimental and theoretical investigation. MONATSHEFTE FUR CHEMIE 2020. [DOI: 10.1007/s00706-020-02699-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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15
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Aisha, Raza MA, Sumrra SH, Javed K, Saqib Z, Maurin JK, Budzianowski A. Synthesis, characterization and molecular modeling of amino derived thiazolidinones as esterase and glucosidase inhibitors. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128609] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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16
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Danish M, Raza MA, Khalid H, Iftikhar U, Arshad MN. New metal complexes of sulfonamide: Synthesis, characterization, in‐vitro anticancer, anticholinesterase, antioxidant, and antibacterial studies. Appl Organomet Chem 2020. [DOI: 10.1002/aoc.6033] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Muhammad Danish
- Department of Chemistry University of Gujrat Gujrat 50700 Pakistan
| | | | - Hirra Khalid
- Department of Chemistry University of Gujrat Gujrat 50700 Pakistan
| | - Umara Iftikhar
- Department of Chemistry University of Gujrat Gujrat 50700 Pakistan
| | - Muhammad Nadeem Arshad
- Chemistry Department, Faculty of Science King Abdulaziz University Jeddah 21589 Saudi Arabia
- Center of Excellence for Advanced Materials Research (CEAMR) King Abdulaziz University PO Box 80203 Jeddah 21589 Saudi Arabia
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17
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Halawa AH, Elgammal WE, Hassan SM, Hassan AH, Nassar HS, Ebrahim HY, Mehany ABM, El-Agrody AM. Synthesis, anticancer evaluation and molecular docking studies of new heterocycles linked to sulfonamide moiety as novel human topoisomerase types I and II poisons. Bioorg Chem 2020; 98:103725. [PMID: 32199303 DOI: 10.1016/j.bioorg.2020.103725] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2019] [Revised: 02/16/2020] [Accepted: 03/03/2020] [Indexed: 12/11/2022]
Abstract
A series of heterocyclic compounds with a sulfonamide moiety were synthesized from reaction of enaminone 4 with active methylene compounds, glycine derivatives, 1,4-benzoquinone, hydroxylamine hydrochloride, hydrazonyl halides and dimethylacetylenedicarboxylate. The newly synthesized sulfonamide derivatives were characterized by FT-IR, 1H NMR, 13C NMR, mass spectroscopy, elemental analysis and alternative synthetic routes. The reactions products were evaluated for their antiproliferative activity against a panel of three different human cancerous cell lines, MCF-7 (breast), HepG-2 (liver) and HCT-116 (colon) and the results were deployed to derive the structure-activity relationships (SAR). Various test compounds were potent antiproliferative to cancerous cells; reaching very low micromolar levels, as in case of 21 which showed IC50 value of 6.2 μM against HepG-2 cell. In addition, treatment of cancerous cells with the synthesized compounds induced cell apoptosis and G2/M phase arrest evidenced by flow cytometric analysis. Furthermore, the activity of the synthesized compounds against TOP I and II were documented by DNA relaxation assays. Data revealed that compound 24 significantly interfered with TOP I- and II-mediated DNA relaxation, nicking and decatenation, with IC50 values 27.8 and 33.6 μM, respectively. Moreover, the molecular docking studies supported the results from enzymatic assays, where compound 24 was intercalated between nucleotides flanking the DNA cleavage site via pi-pi stacking and hydrophobic interactions. In conclusion, aromatic heterocycles linked to sulfonamides are excellent molecular frameworks amenable for optimization as dual TOP I and II poisons to control various human malignancies.
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Affiliation(s)
- Ahmed H Halawa
- Chemistry Department, Faculty of Science, Al-Azhar University, 11284 Nasr City, Cairo, Egypt
| | - Walid E Elgammal
- Chemistry Department, Faculty of Science, Al-Azhar University, 11284 Nasr City, Cairo, Egypt
| | - Saber M Hassan
- Chemistry Department, Faculty of Science, Al-Azhar University, 11284 Nasr City, Cairo, Egypt
| | - Ahmed H Hassan
- Chemistry Department, Faculty of Science, Al-Azhar University, 11284 Nasr City, Cairo, Egypt; Chemistry Department, Faculty of Science, Jazan University, Jazan 45142, Saudi Arabia
| | - Hesham S Nassar
- Chemistry Department, Faculty of Science, Al-Azhar University, 11284 Nasr City, Cairo, Egypt; Chemistry Department, Faculty of Science and Art, Al-Baha University, Al-Baha, 1988, Saudi Arabia
| | - Hassan Y Ebrahim
- Pharmacognosy Department, Faculty of Pharmacy, Helwan University, Cairo 11795, Egypt.
| | - Ahmed B M Mehany
- Zoology Department, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11284, Egypt
| | - Ahmed M El-Agrody
- Chemistry Department, Faculty of Science, Al-Azhar University, 11284 Nasr City, Cairo, Egypt
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18
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Halawa AH, Eskandrani AA, Elgammal WE, Hassan SM, Hassan AH, Ebrahim HY, Mehany ABM, El-Agrody AM, Okasha RM. Rational Design and Synthesis of Diverse Pyrimidine Molecules Bearing Sulfonamide Moiety as Novel ERK Inhibitors. Int J Mol Sci 2019; 20:ijms20225592. [PMID: 31717402 PMCID: PMC6888105 DOI: 10.3390/ijms20225592] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2019] [Revised: 11/01/2019] [Accepted: 11/05/2019] [Indexed: 01/11/2023] Open
Abstract
Protein kinases orchestrate diverse cellular functions; however, their dysregulation is linked to metabolic dysfunctions, associated with many diseases, including cancer. Mitogen-Activated Protein (MAP) kinase is a notoriously oncogenic signaling pathway in human malignancies, where the extracellular signal-regulated kinases (ERK1/2) are focal serine/threonine kinases in the MAP kinase module with numerous cytosolic and nuclear mitogenic effector proteins. Subsequently, hampering the ERK kinase activity by small molecule inhibitors is a robust strategy to control the malignancies with aberrant MAP kinase signaling cascades. Consequently, new heterocyclic compounds, containing a sulfonamide moiety, were rationally designed, aided by the molecular docking of the starting reactant 1-(4-((4-methylpiperidin-1-yl)sulfonyl)phenyl)ethan-1-one (3) at the ATP binding pocket of the ERK kinase domain, which was relying on the molecular extension tactic. The identities of the synthesized compounds (4–33) were proven by their spectral data and elemental analysis. The target compounds exhibited pronounced anti-proliferative activities against the MCF-7, HepG-2, and HCT-116 cancerous cell lines with potencies reaching a 2.96 μM for the most active compound (22). Moreover, compounds 5, 9, 10b, 22, and 28 displayed a significant G2/M phase arrest and induction of the apoptosis, which was confirmed by the cell cycle analysis and the flow cytometry. Thus, the molecular extension of a small fragment bounded at the ERK kinase domain is a valid tactic for the rational synthesis of the ERK inhibitors to control various human malignancies.
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Affiliation(s)
- Ahmed H. Halawa
- Chemistry Department, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11284, Egypt; (A.H.H.); (W.E.E.); (S.M.H.); (A.H.H.); (A.M.E.-A.)
| | - Areej A. Eskandrani
- Chemistry department, Faculty of Science, Taibah University, Medina 30002, Saudi Arabia;
| | - Walid E. Elgammal
- Chemistry Department, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11284, Egypt; (A.H.H.); (W.E.E.); (S.M.H.); (A.H.H.); (A.M.E.-A.)
| | - Saber M. Hassan
- Chemistry Department, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11284, Egypt; (A.H.H.); (W.E.E.); (S.M.H.); (A.H.H.); (A.M.E.-A.)
| | - Ahmed H. Hassan
- Chemistry Department, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11284, Egypt; (A.H.H.); (W.E.E.); (S.M.H.); (A.H.H.); (A.M.E.-A.)
- Chemistry Department, Faculty of Science, Jazan University, Jazan 45142, Saudi Arabia
| | - Hassan Y. Ebrahim
- Pharmacognosy Department, Faculty of Pharmacy, Helwan University, Cairo 11795, Egypt;
| | - Ahmed B. M. Mehany
- Zoology Department, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11284, Egypt;
| | - Ahmed M. El-Agrody
- Chemistry Department, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11284, Egypt; (A.H.H.); (W.E.E.); (S.M.H.); (A.H.H.); (A.M.E.-A.)
| | - Rawda M. Okasha
- Chemistry department, Faculty of Science, Taibah University, Medina 30002, Saudi Arabia;
- Correspondence:
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19
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Raza MA, Fatima K, Saqib Z, Maurin JK, Budzianowski A. Designing of diamino based esterases inhibitors; synthesis, characterization, density functional theory and molecular modeling. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.06.021] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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20
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Özbek N, Özdemir ÜÖ, Altun AF, Şahin E. Sulfonamide-derived hydrazone compounds and their Pd (II) complexes: Synthesis, spectroscopic characterization, X-ray structure determination, in vitro antibacterial activity and computational studies. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.07.016] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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21
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Design, synthesis, molecular docking and biological screening of N-ethyl-N-methylbenzenesulfonamide derivatives as effective antimicrobial and antiproliferative agents. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.04.048] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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22
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Alyar S, Şen T, Özmen ÜÖ, Alyar H, Adem Ş, Şen C. Synthesis, spectroscopic characterizations, enzyme inhibition, molecular docking study and DFT calculations of new Schiff bases of sulfa drugs. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.03.002] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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Tüzün B, Sayin K. Investigations over optical properties of boron complexes of benzothiazolines. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019; 208:48-56. [PMID: 30292150 DOI: 10.1016/j.saa.2018.09.060] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2018] [Revised: 09/16/2018] [Accepted: 09/30/2018] [Indexed: 06/08/2023]
Abstract
Quantum chemical analyses over benzothiazolines and their boron complexes are performed. In calculations, M06-2X method was selected with 6-31 + G(d,p) level. Structural and spectral (IR and NMR) characterization of studied compounds are done in detail. Quantum chemical descriptors (QCDs) are calculated to investigate the optical properties. Furthermore, molecular electrostatic potential (MEP) maps of the studied compounds are calculated by using electro-static potential (ESP) charges. According to QCDs and MEP maps, NLO properties of boron complexes are more than those of benzothiazolines and (Z)-2-((pyridin-2-ylmethylene)amino) benzenethiolatebutane-1,3-bis(olate)boron(III), complex (7), has the most NLO activity in studied compounds. Finally, solvent effect on NLO activity are investigated by calculating UV-vis spectrum in gas phase (ε = 1), toluene (ε = 2.3741), chloroform (ε = 4.7113), methanol (ε = 32.613), water (ε = 78.3553) and n-methylformamide-mixture (ε = 181.56). According to these spectra results, NLO activity mainly increases with increasing of polarizability of media.
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Affiliation(s)
- Burak Tüzün
- Sivas Cumhuriyet University, Science Faculty, Chemistry Department, 58140 Sivas, Turkey
| | - Koray Sayin
- Sivas Cumhuriyet University, Science Faculty, Chemistry Department, 58140 Sivas, Turkey.
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