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Murthy Potla K, Parameshwar Adimule S, Poojith N, Osório FAP, Valverde C, Sheena Mary Y, Vankayalapati S. A comparative study of structural and spectroscopic properties of three structurally similar mechanically bending organic single crystals - 2-Amino-3-nitro-5-halo (halo = Cl, Br, or I) pyridine. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 302:123093. [PMID: 37418906 DOI: 10.1016/j.saa.2023.123093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Revised: 06/09/2023] [Accepted: 06/29/2023] [Indexed: 07/09/2023]
Abstract
In recent years, scientists have been very interested in single crystals of monoaromatic compounds with mechanical softness, but they are hard to find. The present work reports a comparative study of structural, spectroscopic, and quantum chemical investigations of three structurally similar mechanically bending monoaromatic compounds, namely, 2-amino-3-nitro-5-chloro pyridine (I), 2-amino-3-nitro-5-bromo pyridine (II), and 2-amino-3-nitro-5-iodo pyridine (III). The mechanical responses of the three organic crystals studied here are very intriguing due to the similarity of their chemical structures, which only differ in the presence of halogen atoms (Cl, Br, and I) at the fifth position of the pyridine ring and are explained through examining intermolecular interaction energies from energy frameworks analysis, slip layer topology, and Hirshfeld surface analysis. The crystals of all the three feature one dimensional ribbons comprising alternating NaminoH⋯Onitro and NaminoH⋯Npyridine hydrogen bonds that form R22(12) and R22(8) dimeric rings, respectively. In (III), weak I⋯I interactions link the adjacent ribbons forming a two dimensional sheet. Layer-like structures are observed in all three crystals, with no significant interactions between the adjacent architectures (ribbons or sheets). Energy framework calculations are used for estimating the bending ability of the three compounds, with the three following the order Cl ≪ Br < I. The iterative electrostatic scheme coupled with the supermolecule approach (SM) at the DFT/CAM-B3LYP/aug-cc-pVTZ level is used to calculate the third-order nonlinear susceptibility (χ3) values in a simulated crystalline environment for the static case as well as two typical electric field frequency values, (λ = 1064 nm) and (λ = 532 nm). In addition, estimates of the topological studies (localized orbital locator and electron localization function) and reactivity characteristics (global reactivity parameters, molecular electrostatic potential, and Fukui function) are made for the compounds under investigation. Docking studies done using AutoDock software with a protein target (PDB ID: 6CM4) revealed that three compounds could be used to treat Alzheimer's disease.
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Affiliation(s)
- Krishna Murthy Potla
- Department of Chemistry, Velagapudi Ramakrishna Siddhartha Engineering College (Autonomous), Kanuru 520 007, Vijayawada, Andhra Pradesh, India
| | - Suchetan Parameshwar Adimule
- Department of Studies and Research in Chemistry, University College of Science, Tumkur University, Tumkur 572 103, Karnataka, India
| | - Nuthalapati Poojith
- Department of Pharmacology, Sri Ramachandra Institute of Higher Education and Research, Ramachandra Nagar, Porur, Chennai 600 116, India.
| | - Francisco A P Osório
- Instituto de Física, Universidade Federal de Goias, 74690-900 Goiânia, GO, Brazil; Pontifícia Universida de Católica de Goiás, 74605-100 Goiânia, GO, Brazil
| | - Clodoaldo Valverde
- Laboratório de Modelagem Molecular Aplicada e Simulação (LaMMAS), Campus de CiênciasExatas e Tecnológicas, UniversidadeEstadual de Goiás, 75001-970 Anápolis, GO, Brazil; Universidade Paulista, 74845-090 Goiânia, GO, Brazil
| | | | - Suneetha Vankayalapati
- Department of Chemistry, Velagapudi Ramakrishna Siddhartha Engineering College (Autonomous), Kanuru 520 007, Vijayawada, Andhra Pradesh, India
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Valverde C, Vinhal RS, Naves LFN, Custódio JMF, Baseia B, de Oliveira HCB, Perez CN, Napolitano HB, Osório FAP. Remarkable Nonlinear Properties of a Novel Quinolidone Derivative: Joint Synthesis and Molecular Modeling. Molecules 2022; 27:molecules27082379. [PMID: 35458577 PMCID: PMC9028933 DOI: 10.3390/molecules27082379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2022] [Revised: 03/31/2022] [Accepted: 04/02/2022] [Indexed: 11/16/2022] Open
Abstract
A novel 4(1H) quinolinone derivative (QBCP) was synthesized and characterized with single crystal X-ray diffraction. Hirshfeld surfaces (HS) analyses were employed as a complementary tool to evaluate the crystal intermolecular interactions. The molecular global reactivity parameters of QBCP were studied using HOMO and LUMO energies. In addition, the molecular electrostatic potential (MEP) and the UV-Vis absorption and emission spectra were obtained and analyzed. The supermolecule (SM) approach was employed to build a bulk with 474,552 atoms to simulate the crystalline environment polarization effect on the asymmetric unit of the compound. The nonlinear optical properties were investigated using the density functional method (DFT/CAM-B3LYP) with the Pople's 6-311++G(d,p) basis set. The quantum DFT results of the linear polarizability, the average second-order hyperpolarizability and the third-order nonlinear susceptibility values were computed and analyzed. The results showed that the organic compound (QBCP) has great potential for application as a third-order nonlinear optical material.
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Affiliation(s)
- Clodoaldo Valverde
- Campus de Ciências Exatas e Tecnológicas, Universidade Estadual de Goiás, Anápolis 75001-970, GO, Brazil; (L.F.N.N.); (H.B.N.)
- Universidade Paulista — UNIP, Goiânia 74845-090, GO, Brazil
- Correspondence:
| | - Rafael S. Vinhal
- Instituto de Física, Universidade Federal de Goiás, Goiânia 74690-900, GO, Brazil; (R.S.V.); (B.B.); (F.A.P.O.)
| | - Luiz F. N. Naves
- Campus de Ciências Exatas e Tecnológicas, Universidade Estadual de Goiás, Anápolis 75001-970, GO, Brazil; (L.F.N.N.); (H.B.N.)
| | | | - Basílio Baseia
- Instituto de Física, Universidade Federal de Goiás, Goiânia 74690-900, GO, Brazil; (R.S.V.); (B.B.); (F.A.P.O.)
- Departamento de Física, Universidade Federal da Paraíba, João Pessoa 58051-970, PB, Brazil
| | | | - Caridad N. Perez
- Instituto de Química, Universidade Federal de Goiás, Goiânia 74690-900, GO, Brazil; (H.C.B.d.O.); (C.N.P.)
| | - Hamilton B. Napolitano
- Campus de Ciências Exatas e Tecnológicas, Universidade Estadual de Goiás, Anápolis 75001-970, GO, Brazil; (L.F.N.N.); (H.B.N.)
| | - Francisco A. P. Osório
- Instituto de Física, Universidade Federal de Goiás, Goiânia 74690-900, GO, Brazil; (R.S.V.); (B.B.); (F.A.P.O.)
- Escola Politécnica, Pontifícia Universidade Católica de Goiás, Goiânia 74605-100, GO, Brazil
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Sallum LO, Valverde C, Andrade IL, D’Oliveira GDC, Perez CN, Camargo AJ, Osório FAP, Fonseca TL, Napolitano HB. Molecular modeling and nonlinear optical properties of new isostructural halogenated dihydroquinolinones. NEW J CHEM 2022. [DOI: 10.1039/d2nj00501h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Two new isostructural halogenated dihydroquinolinones were synthesized and characterized by single crystal X-ray diffraction.
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Affiliation(s)
- Loide O. Sallum
- Grupo de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás, 75001-970, Anápolis, GO, Brazil
- Laboratório de Novos Materiais, Universidade Evangélica de Goiás, Anápolis, GO, Brazil
| | - Clodoaldo Valverde
- Grupo de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás, 75001-970, Anápolis, GO, Brazil
- Laboratório de Modelagem Molecular Aplicada e Simulação, Universidade Paulista, 74845-090, Goiânia, GO, Brazil
| | - Igor L. Andrade
- Grupo de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás, 75001-970, Anápolis, GO, Brazil
| | | | - Caridad N. Perez
- Instituto de Química, Universidade Federal de Goiás, 74690-970, Goiânia, GO, Brazil
| | - Ademir J. Camargo
- Grupo de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás, 75001-970, Anápolis, GO, Brazil
| | - Francisco A. P. Osório
- Instituto de Física, Universidade Federal de Goiás, 74690-900, Goiânia, GO, Brazil
- Pontifícia Universidade Católica de Goiás, 13566-590, Goiânia, GO, Brazil
| | - Tertius L. Fonseca
- Instituto de Física, Universidade Federal de Goiás, 74690-900, Goiânia, GO, Brazil
| | - Hamilton B. Napolitano
- Grupo de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás, 75001-970, Anápolis, GO, Brazil
- Laboratório de Novos Materiais, Universidade Evangélica de Goiás, Anápolis, GO, Brazil
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Faizi MSH, Cinar EB, Aydin AS, Agar E, Dege N, Mashrai A. Crystal structure, Hirshfeld surface analysis and DFT studies of ( E)-2-{[(3-chloro-4-methyl-phen-yl)imino]-meth-yl}-4-methyl-phenol. Acta Crystallogr E Crystallogr Commun 2020; 76:1320-1324. [PMID: 32844022 PMCID: PMC7405573 DOI: 10.1107/s2056989020009421] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Accepted: 07/09/2020] [Indexed: 05/29/2023]
Abstract
The title compound, C15H14ClNO, was synthesized by condensation reaction of 2-hy-droxy-5-methyl-benzaldehyde and 3-chloro-4-methyl-aniline, and crystallizes in the monoclinic space group P21/c. The 3-chloro-benzene ring is inclined to the phenol ring by 9.38 (11)°. The configuration about the C=N bond is E and an intra-molecular O-H⋯N hydrogen bond forms an S(6) ring motif. The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the packing arrangement are from H⋯H (43.8%) and C⋯H/H⋯C (26.7%) inter-actions. The density functional theory (DFT) optimized structure at the B3LYP/ 6-311 G(d,p) level is compared with the experimentally determined mol-ecular structure and the HOMO-LUMO energy gap is provided.
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Affiliation(s)
- Md. Serajul Haque Faizi
- PG Department of Chemistry, Langat Singh College, B. R. A. Bihar University, Muzaffarpur, Bihar 842001, India
| | - Emine Berrin Cinar
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Physics, 55139, Samsun, Turkey
| | - Alev Sema Aydin
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Physics, 55139, Samsun, Turkey
| | - Erbil Agar
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Chemistry, 55139, Samsun, Turkey
| | - Necmi Dege
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Physics, 55139, Samsun, Turkey
| | - Ashraf Mashrai
- Department of Pharmacy, University of Science and Technology, Ibb Branch, Ibb, Yemen
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Faizi MSH, Cinar EB, Aydin AS, Agar E, Dege N, Mashrai A. Crystal structure, Hirshfeld surface analysis and DFT studies of 2-[(2-hy-droxy-5-methyl-benzyl-idene)amino]-benzo-nitrile. Acta Crystallogr E Crystallogr Commun 2020; 76:1195-1200. [PMID: 32843998 PMCID: PMC7405566 DOI: 10.1107/s2056989020008907] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2020] [Accepted: 06/30/2020] [Indexed: 11/10/2022]
Abstract
The title compound, C15H12N2O, was synthesized by condensation reaction of 2-hy-droxy-5-methyl-benzaldehyde and 2-amino-benzo-nitrile, and crystallizes in the ortho-rhom-bic space group Pbca. The phenol ring is inclined to the benzo-nitrile ring by 25.65 (3)°. The configuration about the C=N bond is E, stabilized by a strong intra-molecular O-H⋯N hydrogen bond that forms an S(6) ring motif. In the crystal, C-H⋯O and C-H⋯N inter-actions lead to the formation of sheets perpendicular to the a axis. C-H⋯π inter-actions, forming polymeric chains along the a-axis direction, connect these sheets into a three-dimensional network. A Hirshfeld surface analysis indicates that the most important contributions for the packing arrangement are from H⋯H and C⋯H/H⋯C inter-actions. The density functional theory (DFT) optimized structure at the B3LYP/6-311 G(d,p) level is compared with the experimentally determined mol-ecular structure and the HOMO-LUMO energy gap is given.
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Affiliation(s)
- Md. Serajul Haque Faizi
- Department of Chemistry, Langat Singh College, B.R.A. Bihar University, Muzaffarpur, Bihar-842001, India
| | - Emine Berrin Cinar
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Physics, Samsun, Turkey
| | - Alev Sema Aydin
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Chemistry, Samsun, Turkey
| | - Erbil Agar
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Chemistry, Samsun, Turkey
| | - Necmi Dege
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Physics, Samsun, Turkey
| | - Ashraf Mashrai
- Department of Pharmacy, University of Science and Technology, Ibb Branch, Ibb, Yemen
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Faizi MSH, Alagöz T, Ahmed R, Cinar EB, Agar E, Dege N, Mashrai A. Crystal structure and Hirshfeld surface analysis of 2-{[(4-iodo-phen-yl)imino]-meth-yl}-4-nitro-phenol. Acta Crystallogr E Crystallogr Commun 2020; 76:1146-1149. [PMID: 32695470 PMCID: PMC7336806 DOI: 10.1107/s2056989020008191] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2020] [Accepted: 06/19/2020] [Indexed: 11/10/2022]
Abstract
The title compound, C13H9IN2O3, was synthesized by a condensation reaction between 2-hy-droxy-5-nitro-benzaldehyde and 4-iodo-aniline, and crystallizes in the ortho-rhom-bic space group Pna21. The 4-iodo-benzene ring is inclined to the phenol ring by a dihedral angle of 39.1 (2)°. The configuration about the C=N double bond is E. The crystal structure features C-H⋯O hydrogen-bonding inter-actions. A Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the packing arrangement are O⋯H/H⋯O (26.9%) and H⋯H (22.0%) inter-actions.
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Affiliation(s)
- Md. Serajul Haque Faizi
- PG Department of Chemistry, Langat Singh College, B. R. A. Bihar University, Muzaffarpur, Bihar 842001, India
| | - Tenzile Alagöz
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Chemistry, Samsun, Turkey
| | - Ruby Ahmed
- Department of Applied Chemistry, ZHCET, Aligarh Muslim University, Aligarh, 202002, UP, India
| | - Emine Berrin Cinar
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Physics, Samsun, Turkey
| | - Erbil Agar
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Chemistry, Samsun, Turkey
| | - Necmi Dege
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Physics, Samsun, Turkey
| | - Ashraf Mashrai
- Department of Pharmacy, University of Science and Technology, Ibb Branch, Ibb, Yemen
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Prabukanthan P, Raveendiran C, Harichandran G, Seenuvasakumaran P. Synthesis, crystal growth, crystal structure, optical, thermal, biological and NLO studies of heterocyclic compound N-(1,3-benzothiazol-2-yl)-2-methoxybenzamide. RESULTS IN CHEMISTRY 2020. [DOI: 10.1016/j.rechem.2020.100083] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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