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Kumaran S, Vetrivelan V, Muthu S, Al-Saadi AA. Computational analysis of anti-cancer drug hydroxyurea adsorption on nanocages of gold, silver and copper: SERS and DFT assessment. Heliyon 2024; 10:e24475. [PMID: 38444468 PMCID: PMC10912048 DOI: 10.1016/j.heliyon.2024.e24475] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Revised: 01/07/2024] [Accepted: 01/09/2024] [Indexed: 03/07/2024] Open
Abstract
The use of nanostructures in targeted drug delivery is effective in decreasing anticancer drug toxicity. Here, we discuss the theoretically predicted adsorption and interaction behavior of hydroxyurea [HU] with nano metal cages (nmC). HU interact the nmC through the N4 in primary amine with energies of -29.776, -30.684 and -22.105 kcal/mol for Au, Ag and Cu cage, respectively. As a result of reactivity studies, HU complexes with nmC (Au/Ag/Cu) are becoming more electrophilic and this gives the nmC system their bioactivity. It is suggested that nanocage is going to change the FMO's energy levels by means of absorption, so that it is used in drug administration. DOS and MEP were accomplished to gain additional understandings into the reactivity of proposed complexes. Method for improving the Raman signal of biomolecules is surface enhanced Raman scattering (SERS), which uses nanosized metal substrates. Chemical enhancement is evidenced by Mulliken charge distributions of all systems for detection and chemical compositions and exerts a significant role in determining them. In HU complexes containing nmC (Au/Ag/Cu), electron density was detected via ELF and LOL calculations. Based on the results of a non-covalent interaction (NCI) analysis, Van der Waals/hydrogen bonds/repulsive steric - interactions have been found. The title compound will also be analyzed in order to determine its bioactivity and drug likeness parameters, as a result, we will able to create a molecule with a highly favorable pharmacological profile and use the docking method to determine the values of the interaction energies for drug delivery. This study suggests that adsorption of drugs on nanocage surface occurs physically and functionalizing the nanocage has increased adsorption energy.
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Affiliation(s)
- S. Kumaran
- Department of ECE, Saveetha Engineering College, Thandalam, Chennai, 602105, Tamilnadu, India
| | - V. Vetrivelan
- Department of Physics, Government College of Engineering, Srirangam, Tiruchirappalli, 620012, Tamilnadu, India
| | - S. Muthu
- Department of Physics, Arignar Anna Govt. Arts College, Cheyyar, 604 407, Tamilnadu, India
| | - Abdulaziz A. Al-Saadi
- Department of Chemistry, King Fahd University of Petroleum & Minerals, Dhahran, 3126, Saudi Arabia
- Interdisciplinary Research Center for Refining and Advanced Chemicals, King Fahd University of Petroleum & Minerals, Dhahran 31261, Saudi Arabia
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Pooventhiran T, Alzahrani AYA, Rajimon K, Thomas R. Solvent interaction and dynamics of neurotransmitters ‐aspartic acid and ‐glutamic acid with water and ethanol. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2022.134347] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Manriquez JM, Venugopala Reddy KR, Shilpa KG, Nagaraja BM. Electrochemical, Ultrasensitive, and Selective Detection of Nitrite and H 2O 2: Novel Macrostructured Phthalocyanine with Composite MWCNTs on a Modified GCE. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2023; 39:1665-1676. [PMID: 36645767 DOI: 10.1021/acs.langmuir.2c03202] [Citation(s) in RCA: 15] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
In the current study, the synthesis of tetra-4-(2-methoxyphenoxy) carboxamide cobalt(II) amide-bridged phthalocyanine (CoTMePhCAPc) is described, as well as its characterization by Fourier transform infrared (FT-IR), UV-visible, and mass spectroscopy; powder X-ray diffraction (PXRD); thermogravimetric analysis (TGA); scanning electron microscopy (SEM); and electrochemistry. Sensing of nitrite (NO2-) and hydrogen peroxide (H2O2) simultaneously was done on CoTMePhCAPc with the composite multiwalled carbon nanotube (MWCNT)-modified glassy carbon electrode (CoTMePhCAPc/MWCNT/GCE) in the range of linear absorption (NO2- and H2O2: CV 50-750, differential pulse voltammetry (DPV) 50-750, CA 50-500 nmol L-1), lower detection limit (NO2- and H2O2: CV 10.5 and 12.5, DPV 10.5 and 11.2, CA 6.0 and 5.5 nmol L-1), and sensitivity (NO2- and H2O2: CV 0.379 and 0.529, DPV 0.043 and 0.049, CA 0.033 and 0.040 μA nM-1 cm-2). The composite electrode exhibits improved electrocatalytic behavior compared to modified electrodes for nitrite and H2O2. The CoTMePhCAPc/MWCNT/GCE sensor displays good selectivity even in the presence of an excess of interfering metal ions and biomolecules at the applied potentials of +400 mV (nitrite) and -400 mV (H2O2). Moreover, the fabricated sensor was studied with various phosphate-buffered saline (PBS) (pH 5-9) electrolyte solutions. The unknown H2O2 concentration in blood samples and apple juice and nitrite concentration in drinking water and butter leaf lettuce were all measured using the usual addition method. Docking analysis clearly indicates that the ligand shows excellent inhibition activity toward the three subjected protein molecules.
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Affiliation(s)
- Juan M Manriquez
- Quimica y de Farmacia, Pontificia Universidad Catolica de Chile, Avenida Vicuña Mackenna, Macul4860, Santiago, Chile
| | - K R Venugopala Reddy
- Department of Studies and Research in Chemistry, Vijayanagara Sri Krishnadevaraya University, Ballari583105, Karnataka, India
| | - K G Shilpa
- Department of Studies and Research in Chemistry, Vijayanagara Sri Krishnadevaraya University, Ballari583105, Karnataka, India
| | - Bhari Mallanna Nagaraja
- Centre for Nano and Material Science (CNMS), JAIN (Deemed-to-be University), Jain Global Campus, Bangalore562112, India
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Putro PA, Maddu A, Hardhienata H, Isnaeni I, Ahmad F, Dipojono HK. Revealing the incorporation of an NH 2 group into the edge of carbon dots for H 2O 2 sensing via the C-N⋯H hydrogen bond interaction. Phys Chem Chem Phys 2023; 25:2606-2617. [PMID: 36602293 DOI: 10.1039/d2cp04097b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
We investigated hydrogen peroxide (H2O2) sensing on NH2-functionalized carbon dots (Cdots) for three different -NH2 positions, and the N atom was found to be the active site using a quantum computational approach. B3LYP and 6-31G(d,p) were used for density functional theory (DFT) ground state calculations, whereas CAM-B3LYP and the same basis set were used in time-dependent density functional theory (TD-DFT) excited state calculations. Structural optimization showed that the H2O2 is chemisorbed on 1-sim via a C-N⋯H hydrogen bond interaction with an adsorption energy of -10.61 kcal mol-1. Mulliken atomic charge distributions and electrostatic potential (ESP) analysis were both used to determine reactivity of the molecules at the atomic level. For in-depth analysis of the ground states, we utilized Frontier molecular orbital (FMO) theory, quantum theory of atoms in molecules (QTAIM), and non-covalent interaction (NCI) index analysis. In addition, we also present UV-vis absorption spectra and charge transfer lengths to understand the mechanism of H2O2 sensing in excited states. Based on the molecular and electronic properties of the NH2-Cdots, it was shown that 1-sim is a potential candidate for use as an electrochemical sensor for H2O2 sensing. Whereas 3-sim is believed to be a potential candidate for use as an optical sensor of H2O2 based on the UV-vis characteristics via photoinduced charge transfer.
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Affiliation(s)
- Permono Adi Putro
- Department of Physics, Faculty of Mathematics and Natural Sciences, IPB University, Bogor, 16680, Indonesia. .,Department of Physics, Faculty of Science, Universitas Mandiri, Subang, 41211, Indonesia
| | - Akhiruddin Maddu
- Department of Physics, Faculty of Mathematics and Natural Sciences, IPB University, Bogor, 16680, Indonesia.
| | - Hendradi Hardhienata
- Department of Physics, Faculty of Mathematics and Natural Sciences, IPB University, Bogor, 16680, Indonesia.
| | - Isnaeni Isnaeni
- Research Center for Photonics, National Research and Innovation Agency, Banten, 15314, Indonesia
| | - Faozan Ahmad
- Department of Physics, Faculty of Mathematics and Natural Sciences, IPB University, Bogor, 16680, Indonesia.
| | - Hermawan Kresno Dipojono
- Department of Engineering Physics, Faculty of Industrial Technology, Bandung Institute of Technology, Bandung, 40132, Indonesia.,Research Center for Nanoscience and Nanotechnology, Bandung Institute of Technology, Bandung, 40132, Indonesia
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Vetrivelan V, Sakthivel S, Muthu S, Al-Saadi AA. Non-covalent interaction, adsorption characteristics and solvent effect of procainamide anti-arrhythmias drug on silver and gold loaded silica surfaces: SERS spectroscopy, density functional theory and molecular docking investigations †. RSC Adv 2023; 13:9539-9554. [PMID: 36968042 PMCID: PMC10035408 DOI: 10.1039/d3ra00514c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2023] [Accepted: 03/01/2023] [Indexed: 03/25/2023] Open
Abstract
First-principle calculations were systematically carried out to explore the structural and electronic properties of the non-covalent interaction of procainamide (PA) anti-arrhythmias drug molecules on silver-loaded and gold-loaded silica nanostructures. Computed adsorption energies presented a higher affinity of PA towards the Ag–SiO2 as compared with Au–SiO2 surfaces. The non-covalent interaction analysis revealed a weak van der Waals type of forces and hydrogen bonding, associated with a noticeable repulsive steric interaction. It was conceived that silver and gold decorated silica can be used for drug administration in biological systems due to the fact that their frontier molecular orbital energy levels were considerably altered upon absorption, decreasing the pertinent energy gaps. Moreover, the electronic spectra of PA⋯Ag–SiO2 and PA⋯Au–SiO2 structures investigated in different solvents display a notable blue shift, suggesting that noble metal-loaded silica can be effective in the context of drug delivery systems. Therefore, silver- and gold-decorated silica of three possible drug adsorption scenarios was fully analyzed to realize the associated bioactivity and drug likeness. Theoretical findings suggest that Ag- and Au–SiO2 nanocomposites can be considered potential drug delivery platforms for procainamide in medication protocols. The structural and electronic properties of the non-covalent interaction of procainamide (PA) anti-arrhythmias drug molecules on silver-loaded and gold-loaded silica nanostructures were explored using first-principle calculations.![]()
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Affiliation(s)
- V. Vetrivelan
- Department of Physics, Thanthai Periyar Government Institute of TechnologyVellore 632002India
| | - S. Sakthivel
- Department of Physics, Panimalar Engineering CollegeChennai600 123TamilnaduIndia
| | - S. Muthu
- Department of Physics, Arignar Anna Govt. Arts CollegeCheyyar 604 407TamilnaduIndia
| | - Abdulaziz A. Al-Saadi
- Department of Chemistry, King Fahd University of Petroleum & MineralsDhahran 31261Saudi Arabia
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Geethapriya J, Shanthidevi A, Arivazhagan M, Elangovan N, Sowrirajan S, Manivel S, Thomas R. Synthesis, characterization, computational, excited state properties, wave function and molecular docking studies of (E)-1-(perfluorophenyl)-N-(p-tolyl) methanimine. J INDIAN CHEM SOC 2022. [DOI: 10.1016/j.jics.2022.100785] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Synthesis, Computational, Electronic spectra, and molecular docking studies of 4-((diphenylmethylene)amino)-N-(pyrimidin-2-yl)benzenesulfonamide. J INDIAN CHEM SOC 2022. [DOI: 10.1016/j.jics.2022.100836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
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Kanagavalli A, Thilagavathi G, Jayachitra R, Elangovan N, Sowrirajan S, Shadakshara Murthy KR, Thomas R. Synthesis, Electronic Structure, UV–Vis, Wave Function, and Molecular Docking Studies of Schiff Base (Z)-N-(Thiazol-2-yl)-4-((Thiophene-2-ylmethylene)Amino)Benzenesulfonamide. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2150657] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
Affiliation(s)
- A. Kanagavalli
- Department of Physics, Government Arts College, Bharathidasan University, Tiruchirappalli, India
| | - G. Thilagavathi
- Department of Physics, Nehru Memorial College, Bharathidasan University, Tiruchirappalli, India
| | - R. Jayachitra
- Department of Physics, Urumu Dhanalakshmi College, Bharathidasan University, Tiruchirappalli, India
| | - N. Elangovan
- Department of Chemistry, St Berchmans College (Autonomous), Mahatma Gandhi University, Changanassery, India
- Department of Mechanical Engineering, University Centre for Research and Development, Chandigarh University, Mohali, India
| | - S. Sowrirajan
- Department of Chemistry, King Fahd University of Petroleum and Minerals, Dhahran, Saudi Arabia
| | | | - Renjith Thomas
- Department of Mechanical Engineering, University Centre for Research and Development, Chandigarh University, Mohali, India
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Sanakarganesan data T, Elangovan data N, Chandrasekar S, Ganesan E, Balachandran data V, Sowrirajan data S, Balasubramani K, Thomas R. Synthesis, Hirshfeld surface analysis, Computational, Wave function properties, Anticancer and Cytotoxicity activity of di[(p-chlorobenzyl) (dibromo)] (4,7-dimethyl-1,10-phenanthroline)tin (IV) complex. Inorganica Chim Acta 2022. [DOI: 10.1016/j.ica.2022.121361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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Synthesis, computational, and molecular docking studies, photophysical properties of (Z)-N-(pyrimidin-2-yl)-4-(thiophen-2-ylmethylene)amino) benzenesulfonamide. J INDIAN CHEM SOC 2022. [DOI: 10.1016/j.jics.2022.100835] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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Jayachitra R, Padmavathy M, Kanagavalli A, Thilagavathi G, Elangovan N, S.Sowrirajan, Thomas R. Synthesis, computational, experimental antimicrobial activities and theoretical molecular docking studies of (E)-4-((4-hydroxy-3-methoxy-5-nitrobenzylidene) amino)-N-(thiazole-2-yl) benzenesulfonamide. J INDIAN CHEM SOC 2022. [DOI: 10.1016/j.jics.2022.100824] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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Synthesis, spectral, structural features, electronic properties, biological activities, computational, wave function properties, and molecular docking studies of (E)-4-(((pentafluorophenyl) methylene) amino)-N-(pyrimidin2-yl)benzenesulfonamide. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133472] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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13
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Ali OAA, Elangovan N, Mahmoud SF, El-Gendey MS, Elbasheer HZE, El-Bahy SM, Thomas R. Synthesis, characterization, vibrational analysis and computational studies of a new Schiff base from pentafluoro benzaldehyde and sulfanilamide. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133445] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Muthukumar R, Karnan M, Elangovan N, Karunanidhi M, Sankarapandian V, Thomas R. Synthesis, spectral, computational, wavefunction and molecular docking studies of 4-((thiophene-2-ylmethylene)amino)benzenesulfonamide from sulfanilamide and thiophene-2-carbalaldehyde. J INDIAN CHEM SOC 2022. [DOI: 10.1016/j.jics.2022.100718] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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15
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Latha A, Elangovan N, Manoj K, Maheswari V, Balachandran V, Balasubramani K, Sowrirajan S, Chandrasekar S, Thomas R. Synthesis, single crystal (XRD), spectral characterization, computational (DFT), quantum chemical modelling and anticancer activity of di(p-bromobenzyl) (dibromo) (1, 10-phenanthroline) tin (IV) complex. J INDIAN CHEM SOC 2022. [DOI: 10.1016/j.jics.2022.100714] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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Rajesh R, Muthu S, Sheela N. Investigations of 6-Fluoro-4-Oxo-3,4-Dihydro-2H-Chromene-2-Carboxylic Acid by Quantum Computational, Spectroscopic, TD-DFT with Various Solvents and Molecular Docking Studies. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2124284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
Affiliation(s)
- R. Rajesh
- Department of Physics, Vel Tech High Tech Dr. Rangarajan Dr. Sakunthala Engineering College (Autonomous), Chennai, India
| | - S. Muthu
- Department of Physics, Arignar Anna Govt. Arts College, Cheyyar, India
| | - N.R. Sheela
- Department of Applied Physics, Sri Venkateswara College of Engineering (Autonomous), Chennai, India
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Latha A, Elangovan N, Manoj K, Keerthi M, Balasubramani K, Sowrirajan S, Chandrasekar S, Thomas R. Synthesis, XRD, spectral, structural, quantum mechanical and anticancer studies of di(p-chlorobenzyl) (dibromo) (1, 10-phenanthroline) tin (IV) complex. J INDIAN CHEM SOC 2022. [DOI: 10.1016/j.jics.2022.100540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Muthukumar R, Karnan M, Elangovan N, Karunanidhi M, Thomas R. Synthesis, spectral analysis, antibacterial activity, quantum chemical studies and supporting molecular docking of Schiff base (E)-4-((4-bromobenzylidene) amino)benzenesulfonamide. J INDIAN CHEM SOC 2022. [DOI: 10.1016/j.jics.2022.100405] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Geethapriya J, Shanthidevi A, Arivazhagan M, Elangovan N, Thomas R. Synthesis, structural, DFT, quantum chemical modeling and molecular docking studies of (E)-4-(((5-methylfuran-2-yl)methylene)amino) benzenesulfonamide from 5-methyl-2-furaldehyde and sulfanilamide. J INDIAN CHEM SOC 2022. [DOI: 10.1016/j.jics.2022.100418] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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Synthesis, XRD, Hirshfeld surface analysis, ESP, HOMO-LUMO, Quantum chemical modeling and Anticancer activity of di(p-methyl benzyl)(dibromo)(1,10-phenanthroline) tin(IV) complex. INORG CHEM COMMUN 2022. [DOI: 10.1016/j.inoche.2022.109324] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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Shatokhin SS, Tuskaev VA, Gagieva SC, Markova AA, Pozdnyakov DI, Melnikova EK, Bulychev BM, Oganesyan ET. Synthesis, cytotoxic and antioxidant activities of new n-substituted 3-(benzimidazol-2-yl)-chromones containing 2,6-di-tert-butylphenol fragment. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131683] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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22
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Theoretical electron excitation study in liquid phase (protic, aprotic, non-polar) and inter and intra molecular reactivity of 2-hydroxy-5-[1-hydroxy-2-(4-phenylbutan-2-ylamino) ethyl] benzamide. J INDIAN CHEM SOC 2022. [DOI: 10.1016/j.jics.2022.100372] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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23
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Antioxidant activities of Alyssum virgatum plant and its main components. Struct Chem 2021. [DOI: 10.1007/s11224-021-01856-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Shatokhin SS, Tuskaev VA, Gagieva SC, Rybalkina EY, Pozdnyakov DI, Melnikova EK, Denisov GL, Zubkevich SV, Oganesyan ET. Synthesis, structural characterization, antioxidant and cytotoxic activity towards human cancer cell lines and computational studies of new Ni(II), Co(II) and Pd(II) complexes with 3-[bis(3,5-dimethylpyrazol-1-yl)methyl]chromen-4-one derivatives. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130706] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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