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Artunç T, Çetinkaya Y, Taslimi P, Menzek A. Investigation of cholinesterase and α-glucosidase enzyme activities, and molecular docking and dft studies for 1,2-disubstituted cyclopentane derivatives with phenyl and benzyl units. Mol Divers 2024:10.1007/s11030-024-10911-y. [PMID: 38976121 DOI: 10.1007/s11030-024-10911-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Accepted: 06/06/2024] [Indexed: 07/09/2024]
Abstract
Six known products (4-9) were prepared from reaction of adipoyl chloride with 1,2,3-trimethoxybenzene according to the literature. From (2,3,4-trimethoxyphenyl)(2-(2,3,4-trimethoxyphenyl)cyclopent-1-en-1-yl)methanone (4) of them, four new 1,2-disubstituted cyclopentane derivatives (10-13) with phenyl and benzyl units were synthesized by reactions such as hydrazonation, catalytic hydrogenation and bromination. The obtained compounds 4-13 were examined for their in vitro inhibitory activity against acetylcholinesterase (AChE), butyrylcholinesterase (BChE) and α-glucosidase enzymes. All compounds 4-13 showed inhibition at nanomolar level with Ki values in the range of 45.53 ± 7.35-631.96 ± 18.88 nM for AChE, 84.30 ± 9.92-622.10 ± 35.14 nM for BChE, and 25.47 ± 4.46-48.87 ± 7.33 for α-Glu. In silico molecular docking studies of the potent compounds were performed in the active sites of AChE (PDB: 1E66), BChE (PDB: 1P0I), and α-glucosidase (PDB: 5ZCC) to compare the effect of bromine atom on the inhibition mechanism. The optimized molecular structures, HOMO-LUMO energies and molecular electrostatic potential maps for the compounds were calculated by using density functional theory with B3LYP/6-31 + G(d,p).
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Affiliation(s)
- Tekin Artunç
- Department of Chemistry, Faculty of Science, Atatürk University, 25240, Erzurum, Turkey
| | - Yasin Çetinkaya
- Department of Chemistry, Faculty of Science, Atatürk University, 25240, Erzurum, Turkey.
| | - Parham Taslimi
- Department of Biotechnology, Faculty of Science, Bartin University, 74100, Bartin, Turkey.
| | - Abdullah Menzek
- Department of Chemistry, Faculty of Science, Atatürk University, 25240, Erzurum, Turkey.
- Department of Emergency Aid and Disaster Management, Faculty of Health Sciences, Ardahan University, 75002, Ardahan, Turkey.
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Yalazan H, Koç D, Aydın Kose F, Fandaklı S, Tüzün B, Akgül Mİ, Sadeghian N, Taslimi P, Kantekin H. Design, syntheses, theoretical calculations, MM-GBSA, potential anti-cancer and enzyme activities of novel Schiff base compounds. J Biomol Struct Dyn 2023:1-14. [PMID: 37921706 DOI: 10.1080/07391102.2023.2274972] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Accepted: 10/18/2023] [Indexed: 11/04/2023]
Abstract
In this study, new Schiff base compounds (SB-F-OH, SB-Cl-OH and SB-Br-OH) were derived from chalcone-derived amine compounds containing halogen groups and 4-hydroxybenzaldehyde. Also, their phthalonitrile compounds (SB-F-CN, SB-Cl-CN and SB-Br-CN) have been synthesized. The structures of these compounds were elucidated by NMR, FT-IR and Mass spectroscopic methods. The quantum chemical parameters were calculated at B3LYP/6-31++g(d,p), HF/6-31++g(d,p) and M062X/6-31++g(d,p) levels. As the biological application of the synthesized compounds, (i) their inhibition properties of the synthesized compounds on Acetylcholinesterase (AChE) and Butyrylcholinesterase (BChE) metabolic enzymes were investigated, and their potential anticancer activities against neuroblastoma (NB; SH-SY5Y) and healthy fibroblast (NIH-3T3) cell lines were determined by in vitro assays. All compounds showed inhibition at nanomolar level with the Ki values in the range of 97.86 ± 30.51-516.82 ± 31.42 nM for AChE, 33.21 ± 4.45-78.50 ± 8.91 nM for BChE, respectively. It has been determined that all tested compounds have a remarkable cytotoxic effect against SH-SY5Y, and IC50 values were significantly lower than NIH-3T3 cells. The lowest IC50 value was observed in SB-Cl-OH (7.48 ± 0.86 µM) and SB-Cl-CN (7.31 ± 0.69 µM). The molecular docking of the molecules was also investigated using crystal structure of AChE enzyme protein (PDB ID: 4M0E), crystal structure of BChE protein (PDB ID: 6R6V) and SH-SY5Y cancer protein (PDB ID: 2F3F, 3PBL and 5WIV). The ADME properties of the compounds were investigated. MM/GBSA method is calculated binding free energy. Afterwards, ADME/T analysis was performed to examine the some properties of the molecules.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Halise Yalazan
- Department of Chemistry, Faculty of Sciences, Karadeniz Technical University, Trabzon, Türkiye
| | - Damla Koç
- Department of Chemistry, Faculty of Sciences, Erciyes University, Kayseri, Türkiye
| | - Fadime Aydın Kose
- Department of Biochemistry, Faculty of Pharmacy, Izmir Katip Celebi University, İzmir, Türkiye
| | - Seda Fandaklı
- Department of Chemistry, Faculty of Sciences, Karadeniz Technical University, Trabzon, Türkiye
| | - Burak Tüzün
- Plant and Animal Production Department, Technical Sciences Vocational School of Sivas, Sivas Cumhuriyet University, Sivas, Türkiye
| | - Muhammed İsmail Akgül
- Department of Biochemistry, Faculty of Pharmacy, Izmir Katip Celebi University, İzmir, Türkiye
| | - Nastaran Sadeghian
- Department of Biotechnology, Faculty of Sciences, Bartin University, Bartin, Türkiye
| | - Parham Taslimi
- Department of Biotechnology, Faculty of Sciences, Bartin University, Bartin, Türkiye
| | - Halit Kantekin
- Department of Chemistry, Faculty of Sciences, Karadeniz Technical University, Trabzon, Türkiye
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Israfilova Z, Taslimi P, Gülçin İ, Abdullayev Y, Farzaliyev V, Karaman M, Sujayev A, Alwasel SH. Some Thiocyanate Containing Heterocyclic Compounds: Synthesis, Bioactivity and Molecular Docking Study. ChemistrySelect 2023. [DOI: 10.1002/slct.202203653] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Zubeyda Israfilova
- Laboratory of Physiologically Active Organic Compounds Institute of Chemistry of Additives 1029 Baku Azerbaijan
| | - Parham Taslimi
- Department of Biotechnology Faculty of Science Bartin University 74100- Bartin Turkey
| | - İlhami Gülçin
- Department of Chemistry Faculty of Sciences Atatürk University 25240 -Erzurum Turkey
| | - Yusif Abdullayev
- Institute of Petrochemical Processes 1025 Baku Azerbaijan
- Baku Engineering University 0101- Baku Azerbaijan
| | - Vagif Farzaliyev
- Laboratory of Physiologically Active Organic Compounds Institute of Chemistry of Additives 1029 Baku Azerbaijan
| | - Muhammet Karaman
- Department of Molecular Biology and Genetics Faculty of Arts and Science Kilis 7 Aralık University 79000- Kilis Turkey
| | - Afsun Sujayev
- Laboratory of Physiologically Active Organic Compounds Institute of Chemistry of Additives 1029 Baku Azerbaijan
| | - Saleh H. Alwasel
- Department of Zoology College of Science King Saud University 11451- Riyadh Saudi Arabia
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Ulchina I, Graur V, Tsapkov V, Chumakov Y, Garbuz O, Burduniuc O, Ceban E, Gulea A. Introducing N-Heteroaromatic Bases into Copper(II) Thiosemicarbazon Complexes: A Way to Change their Biological Activity. Chemistry 2022; 11:e202200208. [PMID: 36541654 PMCID: PMC9769083 DOI: 10.1002/open.202200208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Revised: 11/08/2022] [Indexed: 12/24/2022]
Abstract
Three new copper(II) complexes, [Cu(1,10-Phen)(L)] (1), [Cu(2,2'-Bpy)(L)] (2) and [Cu(3,4-Lut)(L)] (3), where H2 L=2-[(2,4-dihydroxyphenyl)methylidene]-N-(prop-2-en-1-yl)hydrazine-1-carbothioamide, 1,10-Phen=1,10-phenanthroline, 2,2'-Bpy=2,2'-bipyridine, 3,4-Lut=3,4-lutidine, have been synthesized and characterized by elemental analysis, FTIR spectroscopy and single crystal X-ray crystallography (1, 2). All compounds are mononuclear. The introduction of a monodentate N-heteroaromatic base (3,4-dimethylpyridine) has led to a significant increase of antimicrobial activity against Gram-negative Escherichia coli and antifungal activity against Candida albicans compared to the pro-ligand and the precursor complex [Cu(L)H2 O]. The introduction of bidentate N-heteroaromatic bases did not lead to such increase of antimicrobial and antifungal activities. Moreover, complex 3 surpasses the inhibitory activity of tetracycline toward Enterobacter cloacae and the inhibitory activity of fluconazole toward Candida parapsilosis and Cryptococcus neoformans. The study of antioxidant activity against cation radicals ABTS⋅+ showed that complexes 1-3 are more active than Trolox, but only introduction of the monodentate N-heteroaromatic base (3,4-dimethylpyridine) led to the increase of antioxidant properties compared to the precursor complex.
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Affiliation(s)
- Ianina Ulchina
- Laboratory of Advanced Materials in Biofarmaceutics and TechnicsMoldova State UniversityChişinău2009Republic of Moldova
| | - Vasilii Graur
- Laboratory of Advanced Materials in Biofarmaceutics and TechnicsMoldova State UniversityChişinău2009Republic of Moldova
| | - Victor Tsapkov
- Laboratory of Advanced Materials in Biofarmaceutics and TechnicsMoldova State UniversityChişinău2009Republic of Moldova
| | - Yurii Chumakov
- Laboratory of Physical Methods of Solid State Investigation “Tadeusz Malinowski”Institute of Applied PhysicsChişinău2028Republic of Moldova
| | - Olga Garbuz
- Laboratory of Advanced Materials in Biofarmaceutics and TechnicsMoldova State UniversityChişinău2009Republic of Moldova,Institute of ZoologyAcademy of Sciences of MoldovaChişinău2028Republic of Moldova
| | - Olga Burduniuc
- State University of Medicine and Pharmacy “Nicolae Testemiţanu”Chişinău2004Republic of Moldova
| | - Emil Ceban
- State University of Medicine and Pharmacy “Nicolae Testemiţanu”Chişinău2004Republic of Moldova
| | - Aurelian Gulea
- Laboratory of Advanced Materials in Biofarmaceutics and TechnicsMoldova State UniversityChişinău2009Republic of Moldova
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Zahedi NA, Mohammadi-Khanaposhtani M, Rezaei P, Askarzadeh M, Alikhani M, Adib M, Mahdavi M, Larijani B, Niakan S, Tehrani MB, Taslimi P, Gulçin I. Dual functional cholinesterase and carbonic anhydrase inhibitors for the treatment of Alzheimer's disease: Design, synthesis, in vitro, and in silico evaluations of coumarin-dihydropyridine derivatives. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.134767] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Behçet A, Taslimi P, Gök Y, Aktaş A, Taskin‐Tok T, Gülçin İ. New PEPPSI‐Pd‐NHC complexes bearing 4‐hydroxyphenylethyl group: Synthesis, characterization, molecular docking, and bioactivity properties. Arch Pharm (Weinheim) 2022; 355:e2200276. [DOI: 10.1002/ardp.202200276] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2022] [Revised: 07/28/2022] [Accepted: 07/30/2022] [Indexed: 11/10/2022]
Affiliation(s)
- Ayten Behçet
- Department of Chemistry, Faculty of Science and Arts Inonu University Malatya Türkiye
| | - Parham Taslimi
- Department of Biotechnology, Faculty of Science Bartin University Bartin Türkiye
| | - Yetkin Gök
- Department of Chemistry, Faculty of Science and Arts Inonu University Malatya Türkiye
| | - Aydın Aktaş
- Vocational School of Health Service Inonu University Malatya Türkiye
| | - Tugba Taskin‐Tok
- Department of Chemistry, Faculty of Arts and Sciences Gaziantep University Gaziantep Türkiye
- Department of Bioinformatics and Computational Biology, Institute of Health Sciences Gaziantep University Gaziantep Türkiye
| | - İlhami Gülçin
- Department of Chemistry, Faculty of Science Atatürk University Erzurum Türkiye
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