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Yuriy K, Kusdemir G, Volodymyr P, Tüzün B, Taslimi P, Karatas OF, Anastasia K, Maryna P, Sayın K. A biochemistry-oriented drug design: synthesis, anticancer activity, enzymes inhibition, molecular docking studies of novel 1,2,4-triazole derivatives. J Biomol Struct Dyn 2024; 42:1220-1236. [PMID: 37671856 DOI: 10.1080/07391102.2023.2253906] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Accepted: 03/28/2023] [Indexed: 09/07/2023]
Abstract
In this study, we researched the reactions of 5-(5-bromofuran-2-yl)-4-methyl-1,2,4-triazole-3-thiol and 5-thiophene-(3-ylmethyl)-4R-1,2,4-triazole-3-thiols with some halogen-containing compounds, a number of new compounds were synthesized (1.1-1.5 and 2.1-2.8). These compounds showed excellent to good inhibitory activities on acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) enzymes. For obtaining the effects of these compounds on AChE and BChE enzymes were determined spectrophotometrically according to Ellman. IC50 values of these enzymes were ranging between 1.63 and 17.68 nM for AChE and 8.71 and 84.02 nM for BChE. After, prostate cancer is the second leading cause of cancer-related mortality for men over the age of 65 in developed countries. Current treatment options remain limited in the treatment of advanced-stage prostate cancer leading to biochemical recurrence in almost 40% of the patients. Therefore, there is an urgent need for development of novel therapeutic tools for treatment of prostate cancer patients. In this study, we aimed at analyzing the potential of all compounds against prostate cancer cells. We found that, of the tested compounds, 2.1, 2.2 and 2.3 showed significant cytotoxic activities against PC3 prostate cancer cells, although their effect on the viability of normal prostate cells was limited. These findings suggest their selective targeting potential for prostate cancer cells and offer them as candidate therapeutic agents against prostate cancer. The inhibitory activities of some chemical compounds, such as (1.1-1.5 and 2.1-2.8) were assessed by performing the molecular docking study in the presence of AChE, BChE and prostate cancer protein. MM/GBSA methods are calculated binding free energy. Finally, ADME/T analysis was performed to examine the drug properties of the 13 studied molecules.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Karpenko Yuriy
- Department of Natural Sciences for Foreign Students and Toxicological Chemistry, Zaporizhzhia State Medical University, Zaporizhzhia, Ukraine
| | - Gulnur Kusdemir
- Molecular Biology and Genetics Department, Erzurum Technical University, Erzurum, Turkey
- High Technology Application and Research Center, Erzurum Technical University, Erzurum, Turkey
| | - Parchenko Volodymyr
- Department of Natural Sciences for Foreign Students and Toxicological Chemistry, Zaporizhzhia State Medical University, Zaporizhzhia, Ukraine
| | - Burak Tüzün
- Plant and Animal Production Department, Technical Sciences Vocational School of Sivas, Sivas Cumhuriyet University, Sivas, Turkey
| | - Parham Taslimi
- Department of Biotechnology, Faculty of Science, Bartin University, Bartin, Turkey
| | - Omer Faruk Karatas
- Molecular Biology and Genetics Department, Erzurum Technical University, Erzurum, Turkey
- High Technology Application and Research Center, Erzurum Technical University, Erzurum, Turkey
| | - Khilkovets Anastasia
- Department of Natural Sciences for Foreign Students and Toxicological Chemistry, Zaporizhzhia State Medical University, Zaporizhzhia, Ukraine
| | - Parchenko Maryna
- Department of Natural Sciences for Foreign Students and Toxicological Chemistry, Zaporizhzhia State Medical University, Zaporizhzhia, Ukraine
| | - Koray Sayın
- Deparment of Chemistry, Sivas Cumhuriyet University, Sivas, Turkey
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Tokalı FS, Taslimi P, Tuzun B, Karakuş A, Sadeghian N, Gulçin İ. Novel Quinazolinone Derivatives: Potential Synthetic Analogs for the Treatment of Glaucoma, Alzheimer's Disease and Diabetes Mellitus. Chem Biodivers 2023; 20:e202301134. [PMID: 37695993 DOI: 10.1002/cbdv.202301134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2023] [Revised: 09/11/2023] [Accepted: 09/11/2023] [Indexed: 09/13/2023]
Abstract
Quinazolinones, which represent an important part of nitrogen-containing six-membered heterocyclic compounds, are frequently used in drug design due to their wide biological activity properties. Therefore, the novel quinazolinones were synthesized from the reaction of acylated derivatives of 4-hydroxy benzaldehyde with 3-amino-2-alkylquinazolin-4(3H)-ones with good yields (85-94 %) and their structures were characterized using Fourier-transform Infrared (FT-IR), Nuclear Magnetic Resonance (1 H-NMR, 13 C-NMR), and High-Resolution Mass Spectroscopy (HR-MS). As the application of the synthesized compounds, their inhibition properties of the synthesized compounds on α-Glucosidase (α-Glu), Acetylcholinesterase (AChE), Butyrylcholinesterase (BChE), and Carbonic anhydrase I-II (hCA I-II) metabolic enzymes were investigated. All compounds showed inhibition at nanomolar level with the Ki values in the range of 12.73±1.26-93.42±9.44 nM for AChE, 8.48±0.92-25.84±2.59 nM for BChE, 66.17±5.16-818.06±44.41 for α-Glu, 2.56±0.26-88.23±9.72 nM for hCA I, and 1.68±0.14-85.43±7.41 nM for hCA II. Molecular docking study was performed to understand the interactions of the most potent compounds with corresponding enzymes. Also, absorption, distribution, metabolism, excretion, and toxicity (ADME/T) properties of the compounds were investigated.
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Affiliation(s)
- Feyzi Sinan Tokalı
- Department of Material and Material Processing Technologies, Kars Vocational School, Kafkas University, Kars, 36100, Turkiye
| | - Parham Taslimi
- Department of Biotechnology, Faculty of Science, Bartin University, Bartin, 74100, Turkiye
| | - Burak Tuzun
- Departmentof Plant and Animal Production, Sivas Technical Sciences Vocational School, Sivas Cumhuriyet University, 58140, Sivas, Turkiye
| | - Ahmet Karakuş
- Department of Biotechnology, Faculty of Science, Bartin University, Bartin, 74100, Turkiye
| | - Nastaran Sadeghian
- Department of Biotechnology, Faculty of Science, Bartin University, Bartin, 74100, Turkiye
| | - İlhami Gulçin
- Department of Chemistry, Faculty of Sciences, Atatürk University, 25240-, Erzurum, Turkiye
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Kekeçmuhammed H, Tapera M, Aydoğdu E, Sarıpınar E, Aydin Karatas E, Mehtap Uc E, Akyuz M, Tüzün B, Gulcin İ, Emin Bora R, Özer İlhan İ. Synthesis, Biological Activity Evaluation and Molecular Docking of Imidazole Derivatives Possessing Hydrazone Moiety. Chem Biodivers 2023; 20:e202200886. [PMID: 37132191 DOI: 10.1002/cbdv.202200886] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2022] [Revised: 04/23/2023] [Accepted: 05/02/2023] [Indexed: 05/04/2023]
Abstract
In an attempt to identify potential active anticancer agents with low cytotoxic properties and CA inhibitors, a new series of hybrid compounds incorporating imidazole ring and hydrazone moiety as part of their structure were synthesized by aza-Michael addition reaction followed by intramolecular cyclization. The structure of synthesized compounds was elucidated using various spectral techniques. Synthesized compounds were evaluated for their in vitro anticancer (prostate cell lines; PC3) and CA inhibitory (hCA I and hCA II) activity. Among them, some compound displayed remarkable anticancer activity and CA inhibitory activity with Ki values in range of 17.53±7.19-150.50±68.87 nM against cytosolic hCA I isoform associated with epilepsy, and 28.82±14.26-153.27±55.80 nM against dominant cytosolic hCA II isoforms associated with glaucoma. Furthermore, the theoretical parameters of the bioactive molecules were calculated to establish their drug-likeness qualities. The proteins used for the calculations are prostate cancer protein (PDB ID: 3RUK and 6XXP). ADME/T analysis was carried out to examine the drug properties of the studied molecules.
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Affiliation(s)
- Hüseyin Kekeçmuhammed
- Department of Chemistry, Faculty of Science, Erciyes University, 38039, Kayseri, Turkey
| | - Michael Tapera
- Department of Chemistry, Faculty of Science, Erciyes University, 38039, Kayseri, Turkey
| | - Ekrem Aydoğdu
- Department of Chemistry, Faculty of Science, Erciyes University, 38039, Kayseri, Turkey
| | - Emin Sarıpınar
- Department of Chemistry, Faculty of Science, Erciyes University, 38039, Kayseri, Turkey
| | - Elanur Aydin Karatas
- Department of Molecular Biology and Genetics, Faculty of Science, Erzurum Technical University, 25050-, Erzurum, Turkey
| | - Eda Mehtap Uc
- Atatürk University, Faculty of Science, Department of Chemistry, 25240-, Erzurum, Turkey
| | - Mesut Akyuz
- Department of Molecular Biology and Genetics, Faculty of Science, Erzurum Technical University, 25050-, Erzurum, Turkey
| | - Burak Tüzün
- Plant and Animal Production Department, Technical Sciences Vocational School of Sivas, Sivas Cumhuriyet University, 58140-, Sivas, Turkey
| | - İlhami Gulcin
- Atatürk University, Faculty of Science, Department of Chemistry, 25240-, Erzurum, Turkey
| | - Rıfat Emin Bora
- Department of Chemistry, Faculty of Science, Erciyes University, 38039, Kayseri, Turkey
| | - İlhan Özer İlhan
- Department of Chemistry, Faculty of Science, Erciyes University, 38039, Kayseri, Turkey
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Çetinkaya S, Eyupoglu V, Çetintaş Hİ, Yenidünya AF, Kebabcı Ö, Tüzün B. Removal of Erythrosine B dye from wastewater by Penicillium italicum: experimental, DFT, and molecular docking studies. J Biomol Struct Dyn 2023; 41:14212-14223. [PMID: 36889933 DOI: 10.1080/07391102.2023.2186704] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Accepted: 02/06/2023] [Indexed: 03/10/2023]
Abstract
The study involved the adsorption of Erythrosine B onto the dead, dry, and unmodified Penicillium italicum cells and the analytical, visual, theoretical assessment of the adsorbent-adsorbate interactions. It also included desorption studies and reiterative usability of the adsorbent. The fungus was a local isolate and it was identified by partial proteomic experiment in a MALDI-TOFF mass spectrometer. Chemical features of the adsorbent surface were analysed by FT-IR and EDX. Surface topology was visualized by SEM. Isotherm parameters of the adsorption were determined by using three most frequently used models. Erythrosine B appeared to form a monolayer onto the biosorbent and some of the dye molecules could have also penetrated into the adsorbent particles. Kinetic results suggested a spontaneous and exothermic reaction taken place between the dye molecules and the biomaterial. Theoretical approach involved the determination of some of the quantum parameters as well as the toxic or drug potentials of the some of the components of the biomaterial.
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Affiliation(s)
- Serap Çetinkaya
- Department of Molecular Biology and Genetics, Science Faculty, Sivas Cumhuriyet University, Sivas, Turkey
| | - Volkan Eyupoglu
- Department of Chemistry, Faculty of Science, Cankiri Karatekin University, Cankırı, Turkey
| | - Halil İbrahim Çetintaş
- Advanced Technology Research and Application Center (CUTAM), Sivas Cumhuriyet University, Sivas, Turkey
| | - Ali Fazıl Yenidünya
- Department of Molecular Biology and Genetics, Science Faculty, Sivas Cumhuriyet University, Sivas, Turkey
| | - Özgür Kebabcı
- Department of Molecular Biology and Genetics, Science Faculty, Sivas Cumhuriyet University, Sivas, Turkey
| | - Burak Tüzün
- Plant and Animal Production Department, Technical Sciences Vocational School of Sivas, Sivas Cumhuriyet University, Sivas, Turkey
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Chalkha M, Ameziane el Hassani A, Nakkabi A, Tüzün B, Bakhouch M, Benjelloun AT, Sfaira M, Saadi M, Ammari LE, Yazidi ME. Crystal structure, Hirshfeld surface and DFT computations, along with molecular docking investigations of a new pyrazole as a tyrosine kinase inhibitor. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2022.134255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Synthesis, Spectroscopic Characterization, Antibacterial Activity, and Computational Studies of Novel Pyridazinone Derivatives. Molecules 2023; 28:molecules28020678. [PMID: 36677736 PMCID: PMC9861222 DOI: 10.3390/molecules28020678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Revised: 12/26/2022] [Accepted: 01/05/2023] [Indexed: 01/11/2023] Open
Abstract
In this work, a novel series of pyridazinone derivatives (3-17) were synthesized and characterized by NMR (1H and 13C), FT-IR spectroscopies, and ESI-MS methods. All synthesized compounds were screened for their antibacterial activities against Staphylococcus aureus (Methicillin-resistant), Escherichia coli, Salmonella typhimurium, Pseudomonas aeruginosa, and Acinetobacter baumannii. Among the series, compounds 7 and 13 were found to be active against S. aureus (MRSA), P. aeruginosa, and A. baumannii with the lowest MIC value range of 3.74-8.92 µM. Afterwards, DFT calculations of B3LYP/6-31++G(d,p) level were carried out to investigate geometry structures, frontier molecular orbital, molecular electrostatic potential maps, and gap energies of the synthesized compounds. In addition, the activities of these compounds against various bacterial proteins were compared with molecular-docking calculations. Finally, ADMET studies were performed to investigate the possibility of using of the target compounds as drugs.
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Çelik MS, Çetinus ŞA, Yenidünya AF, Çetinkaya S, Tüzün B. Biosorption of Rhodamine B dye from aqueous solution by Rhus coriaria L. plant: Equilibrium, kinetic, thermodynamic and DFT calculations. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2022.134158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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Synthesis, characterization, anti-tuberculosis activity and molecular modeling studies of thiourea derivatives bearing aminoguanidine moiety. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133899] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Exploring the multi-target enzyme inhibition potential of new sulfonamido-thiazoline derivatives; Synthesis and computational studies. RESULTS IN CHEMISTRY 2022. [DOI: 10.1016/j.rechem.2022.100656] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
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Determination of biological studies and molecular docking calculations of isatin-thiosemicarbazone hybrid compounds. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133249] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Kekeçmuhammed H, Tapera M, Tüzün B, Akkoç S, Zorlu Y, Sarıpınar E. Synthesis, Molecular Docking and Antiproliferative Activity Studies of a Thiazole‐Based Compound Linked to Hydrazone Moiety. ChemistrySelect 2022. [DOI: 10.1002/slct.202201502] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
| | - Michael Tapera
- Department of Chemistry Erciyes University Melikgazi 38039 Turkey
| | - Burak Tüzün
- Department of plant and animal production Sivas Cumhuriyet University 58140 Merkez Merkez Sivas Turkey
| | - Senem Akkoç
- Department of Basic Pharmaceutical Sciences Suleyman Demirel University Çünür, Süleyman Demirel Cd. 32260 Merkez/Isparta Turkey
- Department of Pharmacy Bahçeşehir University Çırağan Cd. 34349 Beşiktaş, Istanbul Turkey
| | - Yunus Zorlu
- Department of Chemistry Gebze Technical University Cumhuriyet, 2254. Sk. No:2 41400 Gebze/Kocaeli Turkey
| | - Emin Sarıpınar
- Department of Chemistry Erciyes University Melikgazi 38039 Turkey
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Erdogan MK, Gundogdu R, Yapar Y, Gecibesler IH, Kirici M, Behcet L, Tuzun B, Taslimi P. The Evaluation of Anticancer, Antioxidant, Antidiabetic and Anticholinergic Potentials of Endemic
Rhabdosciadium microcalycinum
Supported by Molecular Docking Study. ChemistrySelect 2022. [DOI: 10.1002/slct.202200400] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Mehmet Kadir Erdogan
- Department of Molecular Biology and Genetics Faculty of Arts and Sciences Bingol University 12000 Bingol Turkey
| | - Ramazan Gundogdu
- Department of Pharmacy Services Vocational School of Health Services Bingol University 12000- Bingol Turkey
| | - Yakup Yapar
- Department of Molecular Biology and Genetics Faculty of Arts and Sciences Bingol University 12000 Bingol Turkey
| | - Ibrahim Halil Gecibesler
- Department of Occupational Health and Safety Faculty of Health Science Bingol University 12000- Bingol Turkey
| | - Mahinur Kirici
- Department of Chemistry Faculty of Arts and Sciences Bingol University 12000- Bingol Turkey
| | - Lutfi Behcet
- Department of Molecular Biology and Genetics Faculty of Arts and Sciences Bingol University 12000 Bingol Turkey
| | - Burak Tuzun
- Plant and Animal Production Department Technical Sciences Vocational School of Sivas Sivas Cumhuriyet University Sivas Turkey
| | - Parham Taslimi
- Department of Biotechnology Faculty of Science Bartin University 74100 - Bartin Turkey
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