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Zhang Y, Mo Y, Han L, Sun Z, Xu W. Exploring Transcriptional Regulation of Hyperaccumulation in Sedum plumbizincicola through Integrated Transcriptome Analysis and CRISPR/Cas9 Technology. Int J Mol Sci 2023; 24:11845. [PMID: 37511604 PMCID: PMC10380820 DOI: 10.3390/ijms241411845] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2023] [Revised: 07/19/2023] [Accepted: 07/21/2023] [Indexed: 07/30/2023] Open
Abstract
The cadmium hyperaccumulator Sedum plumbizincicola has remarkable abilities for cadmium (Cd) transport, accumulation and detoxification, but the transcriptional regulation mechanisms responsible for its Cd hyperaccumulation remain unknown. To address this knowledge gap, we conducted a comparative transcriptome study between S. plumbizincicola and the non-hyperaccumulating ecotype (NHE) of Sedum alfredii with or without Cd treatment. Our results revealed many differentially expressed genes involved in heavy metal transport and detoxification that were abundantly expressed in S. plumbizincicola. Additionally, we identified a large number of differentially expressed transcription factor genes, highlighting the complexity of transcriptional regulatory networks. We further screened four transcription factor genes that were highly expressed in the roots of S. plumbizincicola as candidate genes for creating CRISPR/Cas9 knockout mutations. Among these, the SpARR11 and SpMYB84 mutant lines exhibited decreased Cd accumulation in their aboveground parts, suggesting that these two transcription factors may play a role in the regulation of the Cd hyperaccumulation in S. plumbizincicola. Although further research will be required to determine the precise targeted genes of these transcription factors, combined transcriptome analysis and CRISPR/Cas9 technology provides unprecedented opportunities for identifying transcription factors related to Cd hyperaccumulation and contributes to the understanding of the transcriptional regulation mechanism of hyperaccumulation in S. plumbizincicola.
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Affiliation(s)
- Yixin Zhang
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China; (Y.Z.)
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Yanlan Mo
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Liyuan Han
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China; (Y.Z.)
| | - Zhenyuan Sun
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China; (Y.Z.)
| | - Wenzhong Xu
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
- University of Chinese Academy of Sciences, Beijing 100049, China
- China National Botanical Garden, Beijing 100093, China
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Seregin IV, Kozhevnikova AD. Phytochelatins: Sulfur-Containing Metal(loid)-Chelating Ligands in Plants. Int J Mol Sci 2023; 24:2430. [PMID: 36768751 PMCID: PMC9917255 DOI: 10.3390/ijms24032430] [Citation(s) in RCA: 13] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2022] [Revised: 01/20/2023] [Accepted: 01/23/2023] [Indexed: 01/28/2023] Open
Abstract
Phytochelatins (PCs) are small cysteine-rich peptides capable of binding metal(loid)s via SH-groups. Although the biosynthesis of PCs can be induced in vivo by various metal(loid)s, PCs are mainly involved in the detoxification of cadmium and arsenic (III), as well as mercury, zinc, lead, and copper ions, which have high affinities for S-containing ligands. The present review provides a comprehensive account of the recent data on PC biosynthesis, structure, and role in metal(loid) transport and sequestration in the vacuoles of plant cells. A comparative analysis of PC accumulation in hyperaccumulator plants, which accumulate metal(loid)s in their shoots, and in the excluders, which accumulate metal(loid)s in their roots, investigates the question of whether the endogenous PC concentration determines a plant's tolerance to metal(loid)s. Summarizing the available data, it can be concluded that PCs are not involved in metal(loid) hyperaccumulation machinery, though they play a key role in metal(loid) homeostasis. Unraveling the physiological role of metal(loid)-binding ligands is a fundamental problem of modern molecular biology, plant physiology, ionomics, and toxicology, and is important for the development of technologies used in phytoremediation, biofortification, and phytomining.
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Affiliation(s)
- Ilya V. Seregin
- K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya St., 35, 127276 Moscow, Russia
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Spielmann J, Cointry V, Devime F, Ravanel S, Neveu J, Vert G. Differential metal sensing and metal-dependent degradation of the broad spectrum root metal transporter IRT1. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 112:1252-1265. [PMID: 36269689 DOI: 10.1111/tpj.16010] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Revised: 10/09/2022] [Accepted: 10/13/2022] [Indexed: 06/16/2023]
Abstract
Iron is an essential micronutrient for plant growth and development. Under low iron conditions, Arabidopsis plants take up soil iron using the root iron transporter IRT1. In addition to iron, IRT1 also transports others divalent metals, including cadmium, which consequently accumulates into plant tissues and enters the food chain. IRT1 expression was shown to be regulated at the transcriptional and post-translational levels by its essential metal substrates to maximize iron uptake while limiting the accumulation of zinc, manganese, or cobalt. Here, we characterized the regulation of IRT1 by cadmium. A short-term exposure to cadmium decreased the cell surface levels of IRT1 through endocytosis and degradation, but with a lower efficiency than observed for other IRT1 metal substrates. We demonstrated that IRT1 endocytosis in response to cadmium is mediated through the direct binding of cadmium to histidine residues within the regulatory loop of IRT1. However, we revealed that the affinity of the metal sensing motif is much lower for cadmium compared to other metal substrates of IRT1. Finally, we proved that cadmium-induced IRT1 degradation takes place through ubiquitin-mediated endocytosis driven by the UBC35/36 E2 ubiquitin-conjugating enzymes and the IDF1 E3 ubiquitin ligase. Altogether, this work sheds light on the mechanisms of cadmium-mediated downregulation of IRT1 and provides an additional molecular basis for cadmium accumulation and toxicity in plants.
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Affiliation(s)
- Julien Spielmann
- Plant Science Research Laboratory (LRSV), UMR5546 CNRS/Université Toulouse 3/Toulouse-INP, 24 chemin de Borde Rouge, 31320, Auzeville Tolosane, France
| | - Virginia Cointry
- Plant Science Research Laboratory (LRSV), UMR5546 CNRS/Université Toulouse 3/Toulouse-INP, 24 chemin de Borde Rouge, 31320, Auzeville Tolosane, France
| | - Fabienne Devime
- University of Grenoble Alpes, CEA, INRA, CNRS, IRIG, PCV, 17 Avenue des Martyrs, 38000, Grenoble, France
| | - Stéphane Ravanel
- University of Grenoble Alpes, CEA, INRA, CNRS, IRIG, PCV, 17 Avenue des Martyrs, 38000, Grenoble, France
| | - Julie Neveu
- Plant Science Research Laboratory (LRSV), UMR5546 CNRS/Université Toulouse 3/Toulouse-INP, 24 chemin de Borde Rouge, 31320, Auzeville Tolosane, France
| | - Grégory Vert
- Plant Science Research Laboratory (LRSV), UMR5546 CNRS/Université Toulouse 3/Toulouse-INP, 24 chemin de Borde Rouge, 31320, Auzeville Tolosane, France
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Feki K, Tounsi S, Mrabet M, Mhadhbi H, Brini F. Recent advances in physiological and molecular mechanisms of heavy metal accumulation in plants. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:64967-64986. [PMID: 34599711 DOI: 10.1007/s11356-021-16805-y] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Accepted: 09/24/2021] [Indexed: 05/27/2023]
Abstract
Among abiotic stress, the toxicity of metals impacts negatively on plants' growth and productivity. This toxicity promotes various perturbations in plants at different levels. To withstand stress, plants involve efficient mechanisms through the implication of various signaling pathways. These pathways enhance the expression of many target genes among them gene coding for metal transporters. Various metal transporters which are localized at the plasma membrane and/or at the tonoplast are crucial in metal stress response. Furthermore, metal detoxification is provided by metal-binding proteins like phytochelatins and metallothioneins. The understanding of the molecular basis of metal toxicities signaling pathways and tolerance mechanisms is crucial for genetic engineering to produce transgenic plants that enhance phytoremediation. This review presents an overview of the recent advances in our understanding of metal stress response. Firstly, we described the effect of metal stress on plants. Then, we highlight the mechanisms involved in metal detoxification and the importance of the regulation in the response to heavy metal stress. Finally, we mentioned the importance of genetic engineering for enhancing the phytoremediation technique. In the end, the response to heavy metal stress is complex and implicates various components. Thus, further studies are needed to better understand the mechanisms involved in response to this abiotic stress.
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Affiliation(s)
- Kaouthar Feki
- Laboratory of Legumes and Sustainable Agrosystem (L2AD), Center of Biotechnology of Borj-Cédria, BP901, 2050, Hammam-Lif, Tunisia
| | - Sana Tounsi
- Biotechnology and Plant Improvement Laboratory, Center of Biotechnology of Sfax (CBS), University of Sfax, B.P "1177", 3018, Sfax, Tunisia
| | - Moncef Mrabet
- Laboratory of Legumes and Sustainable Agrosystem (L2AD), Center of Biotechnology of Borj-Cédria, BP901, 2050, Hammam-Lif, Tunisia
| | - Haythem Mhadhbi
- Laboratory of Legumes and Sustainable Agrosystem (L2AD), Center of Biotechnology of Borj-Cédria, BP901, 2050, Hammam-Lif, Tunisia
| | - Faiçal Brini
- Biotechnology and Plant Improvement Laboratory, Center of Biotechnology of Sfax (CBS), University of Sfax, B.P "1177", 3018, Sfax, Tunisia.
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Seregin IV, Kozhevnikova AD. Low-molecular-weight ligands in plants: role in metal homeostasis and hyperaccumulation. PHOTOSYNTHESIS RESEARCH 2021; 150:51-96. [PMID: 32653983 DOI: 10.1007/s11120-020-00768-1] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2020] [Accepted: 06/22/2020] [Indexed: 06/11/2023]
Abstract
Mineral nutrition is one of the key factors determining plant productivity. In plants, metal homeostasis is achieved through the functioning of a complex system governing metal uptake, translocation, distribution, and sequestration, leading to the maintenance of a regulated delivery of micronutrients to metal-requiring processes as well as detoxification of excess or non-essential metals. Low-molecular-weight ligands, such as nicotianamine, histidine, phytochelatins, phytosiderophores, and organic acids, play an important role in metal transport and detoxification in plants. Nicotianamine and histidine are also involved in metal hyperaccumulation, which determines the ability of some plant species to accumulate a large amount of metals in their shoots. In this review we extensively summarize and discuss the current knowledge of the main pathways for the biosynthesis of these ligands, their involvement in metal uptake, radial and long-distance transport, as well as metal influx, isolation and sequestration in plant tissues and cell compartments. It is analyzed how diverse endogenous ligand levels in plants can determine their different tolerance to metal toxic effects. This review focuses on recent advances in understanding the physiological role of these compounds in metal homeostasis, which is an essential task of modern ionomics and plant physiology. It is of key importance in studying the influence of metal deficiency or excess on various physiological processes, which is a prerequisite to the improvement of micronutrient uptake efficiency and crop productivity and to the development of a variety of applications in phytoremediation, phytomining, biofortification, and nutritional crop safety.
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Affiliation(s)
- I V Seregin
- K.A. Timiryazev Institute of Plant Physiology RAS, IPPRAS, Botanicheskaya st., 35, Moscow, Russian Federation, 127276.
| | - A D Kozhevnikova
- K.A. Timiryazev Institute of Plant Physiology RAS, IPPRAS, Botanicheskaya st., 35, Moscow, Russian Federation, 127276
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He L, Zhu Q, Wang Y, Chen C, He M, Tan F. Irrigating digestate to improve cadmium phytoremediation potential of Pennisetum hybridum. CHEMOSPHERE 2021; 279:130592. [PMID: 34134411 DOI: 10.1016/j.chemosphere.2021.130592] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Revised: 04/10/2021] [Accepted: 04/13/2021] [Indexed: 06/12/2023]
Abstract
The bioavailability of heavy metal and growth of hyperaccumulator are key factors controlling the phytoextraction of heavy metal from soil. In this study, the efficacy and potential microbial mechanisms of digestate application in enhancing Cd extraction from soil by Pennisetum hybridum were investigated. The results showed that digestate application significantly promoted the height, tiller number, and biomass yield of Pennisetum hybridum. The application also increased the activities of urease, sucrase, dehydrogenase, available Cd contents of rhizosphere soils (from 2.21 to 2.46 mg kg-1), and the transfer factors of Cd from root to shoot and leaf. Assuming three annual harvests, digestate application would substantially reduce time needed for Pennisetum hybridum to completely absorb Cd from soil-from 15-16 yr-10 yr. Furthermore, the results of microbial community diversity analysis showed that digestate irrigation was more facilitated for the growth of the predominant bacteria, which were Actinobacteria and Chloroflexi at phylum level, and Sphingomonas and Nitrospiraat genus level, which mainly have the functions of promoted plant growth and metal resistance. The results suggested that the enhanced phytoextraction of Cd by Pennisetum hybridum with digestate application might mainly attributed to the increased Cd bio-availability and the enhanced plant growth, indicating that an approach combining digestate and Pennisetum hybridum could be a promising strategy for remediating Cd-contaminated soils.
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Affiliation(s)
- Lin He
- College of Pharmacy and Biological Engineering, Chengdu University, Chengdu, 610106, Sichuan, PR China; Key Laboratory of Development and Application of Rural Renewable Energy, Ministry of Agriculture and Rural Affairs, Biogas Institute of Ministry of Agriculture and Rural Affairs, Chengdu, 610041, Sichuan, PR China
| | - Qili Zhu
- Key Laboratory of Development and Application of Rural Renewable Energy, Ministry of Agriculture and Rural Affairs, Biogas Institute of Ministry of Agriculture and Rural Affairs, Chengdu, 610041, Sichuan, PR China
| | - Yanwei Wang
- Key Laboratory of Development and Application of Rural Renewable Energy, Ministry of Agriculture and Rural Affairs, Biogas Institute of Ministry of Agriculture and Rural Affairs, Chengdu, 610041, Sichuan, PR China
| | - Chenghan Chen
- Key Laboratory of Development and Application of Rural Renewable Energy, Ministry of Agriculture and Rural Affairs, Biogas Institute of Ministry of Agriculture and Rural Affairs, Chengdu, 610041, Sichuan, PR China
| | - Mingxiong He
- Key Laboratory of Development and Application of Rural Renewable Energy, Ministry of Agriculture and Rural Affairs, Biogas Institute of Ministry of Agriculture and Rural Affairs, Chengdu, 610041, Sichuan, PR China
| | - Furong Tan
- Key Laboratory of Development and Application of Rural Renewable Energy, Ministry of Agriculture and Rural Affairs, Biogas Institute of Ministry of Agriculture and Rural Affairs, Chengdu, 610041, Sichuan, PR China.
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Gieroń Ż, Sitko K, Małkowski E. The Different Faces of Arabidopsis arenosa-A Plant Species for a Special Purpose. PLANTS (BASEL, SWITZERLAND) 2021; 10:1342. [PMID: 34209450 PMCID: PMC8309363 DOI: 10.3390/plants10071342] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Revised: 06/24/2021] [Accepted: 06/28/2021] [Indexed: 12/01/2022]
Abstract
The following review article collects information on the plant species Arabidopsis arenosa. Thus far, A. arenosa has been known as a model species for autotetraploidy studies because, apart from diploid individuals, there are also tetraploid populations, which is a unique feature of this Arabidopsis species. In addition, A arenosa has often been reported in heavy metal-contaminated sites, where it occurs together with a closely related species A. halleri, a model plant hyperaccumulator of Cd and Zn. Recent studies have shown that several populations of A. arenosa also exhibit Cd and Zn hyperaccumulation. However, it is assumed that the mechanism of hyperaccumulation differs between these two Arabidopsis species. Nevertheless, this phenomenon is still not fully understood, and thorough research is needed. In this paper, we summarize the current state of knowledge regarding research on A. arenosa.
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Affiliation(s)
| | - Krzysztof Sitko
- Plant Ecophysiology Team, Faculty of Natural Sciences, University of Silesia in Katowice, 28 Jagiellońska Str., 40-032 Katowice, Poland;
| | - Eugeniusz Małkowski
- Plant Ecophysiology Team, Faculty of Natural Sciences, University of Silesia in Katowice, 28 Jagiellońska Str., 40-032 Katowice, Poland;
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Wang S, Huang DY, Zhu QH, Li BZ, Xu C, Zhu HH, Zhang Q. Agronomic traits and ionomics influence on Cd accumulation in various sorghum (Sorghum bicolor (L.) Moench) genotypes. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2021; 214:112019. [PMID: 33639494 DOI: 10.1016/j.ecoenv.2021.112019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2020] [Revised: 01/18/2021] [Accepted: 01/31/2021] [Indexed: 06/12/2023]
Abstract
Cd is a common pollutant that contaminates the ecological environment of soil-crop systems and threatens food security and human health. Sorghum (Sorghum bicolor (L.) Moench) has a great potential for use as energy feedstock and Cd phytoremediation. Therefore, the identification of sorghum genotypes with high Cd accumulation is of great significance to Cd pollution remediation and production of bioenergy. A total of 126 biomass sorghum genotypes grown in a Cd-polluted field were investigated, and their agronomic traits were analyzed, including plant height, leaf number, shoot dry weight (SDW), soil and plant analyzer development (SPAD) value, and concentration of metal ions at seedling stage. Plant height was an important factor for screening potential biomass sorghum species because it presented a significant correlation with the Cd concentration in shoots and SDW (P < 0.01). The highest and lowest Cd concentration in sorghum shoots were 7.88 and 0.99 mg kg-1, respectively. The Cd concentration presented a negative and significant correlation with Mn in sorghum shoots (r = -0.303, P < 0.01), which was in agreement with the results that sorghum species with high Cd concentrations have lower Mn concentrations. In the mature stage, sorghum 12530 presented higher Cd concentration and dry weight in shoots compared with other genotypes. In summary, plant height, SDW, and concentration of Mn in sorghum shoots are critical parameters that synthetically influence the accumulation of Cd in sorghum shoots.
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Affiliation(s)
- Shuai Wang
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China
| | - Dao-You Huang
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China
| | - Qi-Hong Zhu
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China
| | - Bai-Zhong Li
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China
| | - Chao Xu
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China
| | - Han-Hua Zhu
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China
| | - Quan Zhang
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China.
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Morina F, Küpper H. Direct inhibition of photosynthesis by Cd dominates over inhibition caused by micronutrient deficiency in the Cd/Zn hyperaccumulator Arabidopsis halleri. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020; 155:252-261. [PMID: 32781275 DOI: 10.1016/j.plaphy.2020.07.018] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2019] [Revised: 06/20/2020] [Accepted: 07/12/2020] [Indexed: 06/11/2023]
Abstract
This work reveals, by imaging in vivo measurements in the Cd/Zn hyperaccumulator Arabidopsis halleri, in how far Cd stress affects macronutrient (Ca, K) and micronutrient (Fe, Zn) distribution in the leaves. We directly correlate these changes with biophysics of the photosynthetic light reactions. Plants were grown for 2 months at 10 μM Zn (=control), and supplemented with 10, 15, 50 or 75 μM Cd. Direct imaging of OJIP transients revealed that bundle sheath cells were more sensitive to Cd toxicity than mesophyll cells further from the vein. Progressive inhibition of photosystem (PS) II reaction centres and decrease in quantum yield of electron transport between QA and QB and further to PSI acceptors was observed. This was correlated with the decreased dynamics of QA re-oxidation and lower operating efficiency of PSII. Analysis by a benchtop micro X-ray fluorescence device showed that Cd mostly accumulated in the veins, and restricted Fe and Zn distribution from the veins, especially in the 75 μM Cd, while K concentration increased in the whole leaf. Calcium distribution was apparently not affected by Cd, but Cd excess inhibited trichome formation and thereby diminished total Ca concentration in the leaves. The results point to differential tissue sensitivity to Cd, evident by heterogeneous inhibition of photosynthesis. Part of this may be a result of selective disturbances in the leaf nutrient homeostasis. The better photosynthetic performance away from the veins compared to the bundle sheath cells, however, indicates that direct inhibition of photosynthesis by Cd dominates over inhibition caused by micronutrient deficiency.
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Affiliation(s)
- Filis Morina
- Czech Academy of Sciences, Biology Centre, Institute of Plant Molecular Biology, Department of Plant Biophysics & Biochemistry Branišovská 31/1160, 37005, České Budějovice, Czech Republic
| | - Hendrik Küpper
- Czech Academy of Sciences, Biology Centre, Institute of Plant Molecular Biology, Department of Plant Biophysics & Biochemistry Branišovská 31/1160, 37005, České Budějovice, Czech Republic; University of South Bohemia, Department of Experimental Plant Biology, Branišovská 31/1160, 37005, České Budějovice, Czech Republic.
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Zhang Y, Li C, Ji X, Yun C, Wang M, Luo X. The knowledge domain and emerging trends in phytoremediation: a scientometric analysis with CiteSpace. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:15515-15536. [PMID: 32078132 DOI: 10.1007/s11356-020-07646-2] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2019] [Accepted: 01/07/2020] [Indexed: 05/24/2023]
Abstract
As a cost-effective, environmentally friendly remediation technology, phytoremediation is defined as the use of green plants to remove pollutants from the environment or render them harmless and has been applied to a variety of contaminated sites throughout the world. There is a prominent phenomenon in which publications about phytoremediation increase each year and involve an increasing number of subject categories. This paper adopts the scientometric analysis method to assess the current state and explore the trends of phytoremediation research based on the bibliographic records retrieved from the Web of Science Core Collection (WoSCC). The results of this paper clearly answer the following questions. (1) What are the publishing characteristics of research on the topic of phytoremediation? What are the characteristics of academic collaboration in phytoremediation research? (2) What are the characteristics and development trends of phytoremediation research? (3) What are the hotspots and frontiers of phytoremediation research? Overall, the research method provides a new approach for the assessment of the performance of phytoremediation research. These results may help new researchers quickly integrate into the field of phytoremediation, as they can easily grasp the frontiers of phytoremediation research and obtain more valuable scientific information. This study also provides references for the follow-up research of relevant researchers.
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Affiliation(s)
- Yu Zhang
- School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, 621010, Sichuan, People's Republic of China
| | - Chen Li
- School of Chemistry and Environmental Science, Shaanxi University of Technology, Hanzhong, 723001, Shaanxi, People's Republic of China.
- School of Environment and Resource, Southwest University of Science and Technology, Mianyang, 621010, Sichuan, People's Republic of China.
- Engineering Research Center of Biomass Materials, Ministry of Education, Mianyang, 621010, Sichuan, People's Republic of China.
- Shaanxi Key Laboratory of Catalysis, Hanzhong, 723001, Shaanxi, People's Republic of China.
| | - Xiaohui Ji
- School of Chemistry and Environmental Science, Shaanxi University of Technology, Hanzhong, 723001, Shaanxi, People's Republic of China
- School of Environment and Resource, Southwest University of Science and Technology, Mianyang, 621010, Sichuan, People's Republic of China
- Engineering Research Center of Biomass Materials, Ministry of Education, Mianyang, 621010, Sichuan, People's Republic of China
- Shaanxi Key Laboratory of Catalysis, Hanzhong, 723001, Shaanxi, People's Republic of China
| | - Chaole Yun
- School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, 621010, Sichuan, People's Republic of China
| | - Maolin Wang
- School of Environment and Resource, Southwest University of Science and Technology, Mianyang, 621010, Sichuan, People's Republic of China
- Engineering Research Center of Biomass Materials, Ministry of Education, Mianyang, 621010, Sichuan, People's Republic of China
| | - Xuegang Luo
- Engineering Research Center of Biomass Materials, Ministry of Education, Mianyang, 621010, Sichuan, People's Republic of China
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Fasani E, Manara A, Martini F, Furini A, DalCorso G. The potential of genetic engineering of plants for the remediation of soils contaminated with heavy metals. PLANT, CELL & ENVIRONMENT 2018; 41:1201-1232. [PMID: 28386947 DOI: 10.1111/pce.12963] [Citation(s) in RCA: 89] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2016] [Revised: 03/06/2017] [Accepted: 03/28/2017] [Indexed: 05/22/2023]
Abstract
The genetic engineering of plants to facilitate the reclamation of soils and waters contaminated with inorganic pollutants is a relatively new and evolving field, benefiting from the heterologous expression of genes that increase the capacity of plants to mobilize, stabilize and/or accumulate metals. The efficiency of phytoremediation relies on the mechanisms underlying metal accumulation and tolerance, such as metal uptake, translocation and detoxification. The transfer of genes involved in any of these processes into fast-growing, high-biomass crops may improve their reclamation potential. The successful phytoextraction of metals/metalloids and their accumulation in aerial organs have been achieved by expressing metal ligands or transporters, enzymes involved in sulfur metabolism, enzymes that alter the chemical form or redox state of metals/metalloids and even the components of primary metabolism. This review article considers the potential of genetic engineering as a strategy to improve the phytoremediation capacity of plants in the context of heavy metals and metalloids, using recent case studies to demonstrate the practical application of this approach in the field.
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Affiliation(s)
- Elisa Fasani
- Department of Biotechnology, University of Verona, St. Le Grazie 15, Verona, 37134, Italy
| | - Anna Manara
- Department of Biotechnology, University of Verona, St. Le Grazie 15, Verona, 37134, Italy
| | - Flavio Martini
- Department of Biotechnology, University of Verona, St. Le Grazie 15, Verona, 37134, Italy
| | - Antonella Furini
- Department of Biotechnology, University of Verona, St. Le Grazie 15, Verona, 37134, Italy
| | - Giovanni DalCorso
- Department of Biotechnology, University of Verona, St. Le Grazie 15, Verona, 37134, Italy
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Differential physiological responses and tolerance to potentially toxic elements in biodiesel tree Jatropha curcas. Sci Rep 2018; 8:1635. [PMID: 29374257 PMCID: PMC5786012 DOI: 10.1038/s41598-018-20188-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2017] [Accepted: 01/09/2018] [Indexed: 11/08/2022] Open
Abstract
Environmental pollution by potentially toxic elements (PTEs) has become a serious problem with increasing industrialization and the disturbance of natural biogeochemical cycles. Jatropha is an oilseed-bearing shrub with high potential for biodiesel production in arid regions. In this study, we examined the physiological responses of this plant to five representative PTEs (Cd, Cr, Cu, Ni, and Zn) in a hydroponic culture. Application of higher concentrations of Cd and Zn led to severe leaf chlorosis, and Cd, Cu, and Ni treatments resulted in significant growth retardation. Higher enrichment of the applied PTEs in the shoots was observed for Zn- and Cd-treated plants, with the latter reaching 24-fold enrichment in plants exposed to 10 μM Cd, suggesting that Jatropha can cope with relatively higher internal concentrations of toxic Cd. Although Cd stress led to the disturbance of essential mineral homeostasis and photosynthesis, this induced an increase in thiol compounds in the roots, suggesting defensive responses of Jatropha to PTEs. This study showed that Jatropha exhibits distinct sensitivities and physiological responses to different PTEs. This study also provides basic knowledge for diagnosing the physiological status of Jatropha trees for potential dual use in afforestation and as a sustainable energy supply.
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Role of Phytochelatins (PCs), Metallothioneins (MTs), and Heavy Metal ATPase (HMA) Genes in Heavy Metal Tolerance. Fungal Biol 2018. [DOI: 10.1007/978-3-319-77386-5_2] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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14
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Ojuederie OB, Babalola OO. Microbial and Plant-Assisted Bioremediation of Heavy Metal Polluted Environments: A Review. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2017; 14:ijerph14121504. [PMID: 29207531 PMCID: PMC5750922 DOI: 10.3390/ijerph14121504] [Citation(s) in RCA: 293] [Impact Index Per Article: 41.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/15/2017] [Revised: 11/27/2017] [Accepted: 11/30/2017] [Indexed: 11/26/2022]
Abstract
Environmental pollution from hazardous waste materials, organic pollutants and heavy metals, has adversely affected the natural ecosystem to the detriment of man. These pollutants arise from anthropogenic sources as well as natural disasters such as hurricanes and volcanic eruptions. Toxic metals could accumulate in agricultural soils and get into the food chain, thereby becoming a major threat to food security. Conventional and physical methods are expensive and not effective in areas with low metal toxicity. Bioremediation is therefore an eco-friendly and efficient method of reclaiming environments contaminated with heavy metals by making use of the inherent biological mechanisms of microorganisms and plants to eradicate hazardous contaminants. This review discusses the toxic effects of heavy metal pollution and the mechanisms used by microbes and plants for environmental remediation. It also emphasized the importance of modern biotechnological techniques and approaches in improving the ability of microbial enzymes to effectively degrade heavy metals at a faster rate, highlighting recent advances in microbial bioremediation and phytoremediation for the removal of heavy metals from the environment as well as future prospects and limitations. However, strict adherence to biosafety regulations must be followed in the use of biotechnological methods to ensure safety of the environment.
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Affiliation(s)
- Omena Bernard Ojuederie
- Food Security and Safety Niche Area, Faculty of Natural and Agricultural Sciences, North-West University, Private Mail Bag X2046, Mmabatho 2735, South Africa.
| | - Olubukola Oluranti Babalola
- Food Security and Safety Niche Area, Faculty of Natural and Agricultural Sciences, North-West University, Private Mail Bag X2046, Mmabatho 2735, South Africa.
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15
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Tian S, Xie R, Wang H, Hu Y, Hou D, Liao X, Brown PH, Yang H, Lin X, Labavitch JM, Lu L. Uptake, sequestration and tolerance of cadmium at cellular levels in the hyperaccumulator plant species Sedum alfredii. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:2387-2398. [PMID: 28407073 PMCID: PMC5853795 DOI: 10.1093/jxb/erx112] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2016] [Accepted: 03/14/2017] [Indexed: 05/08/2023]
Abstract
Sedum alfredii is one of a few plant species known to hyperaccumulate cadmium (Cd). Uptake, localization, and tolerance of Cd at cellular levels in shoots were compared in hyperaccumulating (HE) and non-hyperaccumulating (NHE) ecotypes of Sedum alfredii. X-ray fluorescence images of Cd in stems and leaves showed only a slight Cd signal restricted within vascular bundles in the NHEs, while enhanced localization of Cd, with significant tissue- and age-dependent variations, was detected in HEs. In contrast to the vascular-enriched Cd in young stems, parenchyma cells in leaf mesophyll, stem pith and cortex tissues served as terminal storage sites for Cd sequestration in HEs. Kinetics of Cd transport into individual leaf protoplasts of the two ecotypes showed little difference in Cd accumulation. However, far more efficient storage of Cd in vacuoles was apparent in HEs. Subsequent analysis of cell viability and hydrogen peroxide levels suggested that HE protoplasts exhibited higher resistance to Cd than those of NHE protoplasts. These results suggest that efficient sequestration into vacuoles, as opposed to rapid transport into parenchyma cells, is a pivotal process in Cd accumulation and homeostasis in shoots of HE S. alfredii. This is in addition to its efficient root-to-shoot translocation of Cd.
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Affiliation(s)
- Shengke Tian
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Environmental & Resource Science, Zhejiang University, Hangzhou, China
| | - Ruohan Xie
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Environmental & Resource Science, Zhejiang University, Hangzhou, China
| | - Haixin Wang
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Environmental & Resource Science, Zhejiang University, Hangzhou, China
| | - Yan Hu
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Environmental & Resource Science, Zhejiang University, Hangzhou, China
| | - Dandi Hou
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Environmental & Resource Science, Zhejiang University, Hangzhou, China
| | - Xingcheng Liao
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Environmental & Resource Science, Zhejiang University, Hangzhou, China
| | - Patrick H Brown
- Department of Plant Sciences, University of California, Davis, CA, USA
| | - Hongxia Yang
- National Research Center for Geoanalysis, Beijing, China
| | - Xianyong Lin
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Environmental & Resource Science, Zhejiang University, Hangzhou, China
| | - John M Labavitch
- Department of Plant Sciences, University of California, Davis, CA, USA
| | - Lingli Lu
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Environmental & Resource Science, Zhejiang University, Hangzhou, China
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16
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Khare D, Mitsuda N, Lee S, Song W, Hwang D, Ohme‐Takagi M, Martinoia E, Lee Y, Hwang J. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. THE NEW PHYTOLOGIST 2017; 213:1257-1273. [PMID: 27768815 PMCID: PMC5248625 DOI: 10.1111/nph.14242] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2016] [Accepted: 08/30/2016] [Indexed: 05/20/2023]
Abstract
Plants reorganize their root architecture to avoid growth into unfavorable regions of the rhizosphere. In a screen based on chimeric repressor gene-silencing technology, we identified the Arabidopsis thaliana GeBP-LIKE 4 (GPL4) transcription factor as an inhibitor of root growth that is induced rapidly in root tips in response to cadmium (Cd). We tested the hypothesis that GPL4 functions in the root avoidance of Cd by analyzing root proliferation in split medium, in which only half of the medium contained toxic concentrations of Cd. The wild-type (WT) plants exhibited root avoidance by inhibiting root growth in the Cd side but increasing root biomass in the control side. By contrast, GPL4-suppression lines exhibited nearly comparable root growth in the Cd and control sides and accumulated more Cd in the shoots than did the WT. GPL4 suppression also altered the root avoidance of toxic concentrations of other essential metals, modulated the expression of many genes related to oxidative stress, and consistently decreased reactive oxygen species concentrations. We suggest that GPL4 inhibits the growth of roots exposed to toxic metals by modulating reactive oxygen species concentrations, thereby allowing roots to colonize noncontaminated regions of the rhizosphere.
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Affiliation(s)
- Deepa Khare
- Department of Life SciencePohang University of Science and Technology (POSTECH)Pohang37673Korea
| | - Nobukata Mitsuda
- Bioproduction Research InstituteNational Institute of Advanced Industrial Science and TechnologyTsukubaJapan
| | - Seungchul Lee
- School of Interdisciplinary Bioscience and BioengineeringPOSTECHPohang37673Korea
| | - Won‐Yong Song
- Department of Life SciencePohang University of Science and Technology (POSTECH)Pohang37673Korea
- Division of Integrative Bioscience and BiotechnologyPOSTECHPohang37673Korea
| | - Daehee Hwang
- School of Interdisciplinary Bioscience and BioengineeringPOSTECHPohang37673Korea
- Department of New Biology and Center for Plant Aging ResearchDGISTDaegu42988Korea
| | - Masaru Ohme‐Takagi
- Bioproduction Research InstituteNational Institute of Advanced Industrial Science and TechnologyTsukubaJapan
- Division of Strategic Research and DevelopmentGraduate School of Science and EngineeringSaitama UniversitySaitamaJapan
| | - Enrico Martinoia
- Department of Plant and Microbial BiologyUniversity ZurichZollikerstrasse 107CH‐8008ZürichSwitzerland
| | - Youngsook Lee
- Department of Life SciencePohang University of Science and Technology (POSTECH)Pohang37673Korea
- Division of Integrative Bioscience and BiotechnologyPOSTECHPohang37673Korea
| | - Jae‐Ung Hwang
- Department of Life SciencePohang University of Science and Technology (POSTECH)Pohang37673Korea
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17
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Zhang WH, He LY, Wang Q, Sheng XF. Inoculation with endophytic Bacillus megaterium 1Y31 increases Mn accumulation and induces the growth and energy metabolism-related differentially-expressed proteome in Mn hyperaccumulator hybrid pennisetum. JOURNAL OF HAZARDOUS MATERIALS 2015; 300:513-521. [PMID: 26241871 DOI: 10.1016/j.jhazmat.2015.07.049] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2015] [Revised: 07/14/2015] [Accepted: 07/18/2015] [Indexed: 06/04/2023]
Abstract
In this study, a hydroponic culture experiment was conducted in a greenhouse to investigate the molecular and microbial mechanisms involved in the endophytic Bacillus megaterium 1Y31-enhanced Mn tolerance and accumulation in Mn hyperaccumulator hybrid pennisetum. Strain 1Y31 significantly increased the dry weights (ranging from 28% to 94%) and total Mn uptake (ranging from 23% to 112%) of hybrid pennisetum treated with 0, 2, and 10mM Mn compared to the control. Total 98 leaf differentially expressed proteins were identified between the live and dead bacterial inoculated hybrid pennisetum. The major leaf differentially expressed proteins were involved in energy generation, photosynthesis, response to stimulus, metabolisms, and unknown function. Furthermore, most of the energy generation and photosynthesis-related proteins were up-regulated, whereas most of the response to stimulus and metabolism-related proteins were down-regulated under Mn stress. Notably, the proportion of indole-3-acetic acid (IAA)-producing endophytic bacteria was significantly higher in the bacterial inoculated plants under Mn stress. The results suggested that strain 1Y31 increased the growth and Mn uptake of hybrid pennisetum through increasing the efficiency of photosynthesis and energy metabolism as well as the proportion of plant growth-promoting endophytic bacteria in the plants.
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Affiliation(s)
- Wen-Hui Zhang
- Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture, College of Life Science, Nanjing Agricultural University, Nanjing 210095, PR China
| | - Lin-Yan He
- Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture, College of Life Science, Nanjing Agricultural University, Nanjing 210095, PR China
| | - Qi Wang
- Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture, College of Life Science, Nanjing Agricultural University, Nanjing 210095, PR China
| | - Xia-Fang Sheng
- Key Laboratory of Agricultural and Environmental Microbiology, Ministry of Agriculture, College of Life Science, Nanjing Agricultural University, Nanjing 210095, PR China.
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18
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Huang CH, Sun R, Hu Y, Zeng L, Zhang N, Cai L, Zhang Q, Koch MA, Al-Shehbaz I, Edger PP, Pires JC, Tan DY, Zhong Y, Ma H. Resolution of Brassicaceae Phylogeny Using Nuclear Genes Uncovers Nested Radiations and Supports Convergent Morphological Evolution. Mol Biol Evol 2015; 33:394-412. [PMID: 26516094 PMCID: PMC4866547 DOI: 10.1093/molbev/msv226] [Citation(s) in RCA: 175] [Impact Index Per Article: 19.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Abstract
Brassicaceae is one of the most diverse and economically valuable angiosperm families with widely cultivated vegetable crops and scientifically important model plants, such as Arabidopsis thaliana. The evolutionary history, ecological, morphological, and genetic diversity, and abundant resources and knowledge of Brassicaceae make it an excellent model family for evolutionary studies. Recent phylogenetic analyses of the family revealed three major lineages (I, II, and III), but relationships among and within these lineages remain largely unclear. Here, we present a highly supported phylogeny with six major clades using nuclear markers from newly sequenced transcriptomes of 32 Brassicaceae species and large data sets from additional taxa for a total of 55 species spanning 29 out of 51 tribes. Clade A consisting of Lineage I and Macropodium nivale is sister to combined Clade B (with Lineage II and others) and a new Clade C. The ABC clade is sister to Clade D with species previously weakly associated with Lineage II and Clade E (Lineage III) is sister to the ABCD clade. Clade F (the tribe Aethionemeae) is sister to the remainder of the entire family. Molecular clock estimation reveals an early radiation of major clades near or shortly after the Eocene–Oligocene boundary and subsequent nested divergences of several tribes of the previously polytomous Expanded Lineage II. Reconstruction of ancestral morphological states during the Brassicaceae evolution indicates prevalent parallel (convergent) evolution of several traits over deep times across the entire family. These results form a foundation for future evolutionary analyses of structures and functions across Brassicaceae.
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Affiliation(s)
- Chien-Hsun Huang
- State Key Laboratory of Genetic Engineering and Collaborative Innovation Center of Genetics and Development, Ministry of Education Key Laboratory of Biodiversity Sciences and Ecological Engineering, Institute of Plant Biology, Institute of Biodiversity Sciences, Center for Evolutionary Biology, School of Life Sciences, Fudan University, Shanghai, China
| | - Renran Sun
- State Key Laboratory of Genetic Engineering and Collaborative Innovation Center of Genetics and Development, Ministry of Education Key Laboratory of Biodiversity Sciences and Ecological Engineering, Institute of Plant Biology, Institute of Biodiversity Sciences, Center for Evolutionary Biology, School of Life Sciences, Fudan University, Shanghai, China
| | - Yi Hu
- Department of Biology, The Huck Institute of the Life Sciences, Pennsylvania State University
| | - Liping Zeng
- State Key Laboratory of Genetic Engineering and Collaborative Innovation Center of Genetics and Development, Ministry of Education Key Laboratory of Biodiversity Sciences and Ecological Engineering, Institute of Plant Biology, Institute of Biodiversity Sciences, Center for Evolutionary Biology, School of Life Sciences, Fudan University, Shanghai, China
| | - Ning Zhang
- Department of Botany, National Museum of Natural History, MRC 166, Smithsonian Institution, Washington, DC
| | - Liming Cai
- State Key Laboratory of Genetic Engineering and Collaborative Innovation Center of Genetics and Development, Ministry of Education Key Laboratory of Biodiversity Sciences and Ecological Engineering, Institute of Plant Biology, Institute of Biodiversity Sciences, Center for Evolutionary Biology, School of Life Sciences, Fudan University, Shanghai, China
| | - Qiang Zhang
- Guangxi Key Laboratory of Plant Conservation and Restoration Ecology in Karst Terrain, Guangxi Institute of Botany, Guangxi Zhuang Autonomous Region and Chinese Academy of Sciences, Guilin, China
| | - Marcus A Koch
- Biodiversity and Plant Systematics, Centre for Organismal Studies Heidelberg, Heidelberg University, Heidelberg, Germany
| | | | - Patrick P Edger
- Department of Horticulture, Michigan State University, East Lansing
| | - J Chris Pires
- Division of Biological Sciences, University of Missouri, Columbia
| | - Dun-Yan Tan
- Xinjiang Key Laboratory of Grassland Resources and Ecology, College of Grassland and Environment Sciences, Xinjiang Agricultural University, Ürümqi, China
| | - Yang Zhong
- State Key Laboratory of Genetic Engineering and Collaborative Innovation Center of Genetics and Development, Ministry of Education Key Laboratory of Biodiversity Sciences and Ecological Engineering, Institute of Plant Biology, Institute of Biodiversity Sciences, Center for Evolutionary Biology, School of Life Sciences, Fudan University, Shanghai, China
| | - Hong Ma
- State Key Laboratory of Genetic Engineering and Collaborative Innovation Center of Genetics and Development, Ministry of Education Key Laboratory of Biodiversity Sciences and Ecological Engineering, Institute of Plant Biology, Institute of Biodiversity Sciences, Center for Evolutionary Biology, School of Life Sciences, Fudan University, Shanghai, China
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19
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Isaure MP, Huguet S, Meyer CL, Castillo-Michel H, Testemale D, Vantelon D, Saumitou-Laprade P, Verbruggen N, Sarret G. Evidence of various mechanisms of Cd sequestration in the hyperaccumulator Arabidopsis halleri, the non-accumulator Arabidopsis lyrata, and their progenies by combined synchrotron-based techniques. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:3201-14. [PMID: 25873676 DOI: 10.1093/jxb/erv131] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Arabidopsis halleri is a model plant for Zn and Cd hyperaccumulation. The objective of this study was to determine the relationship between the chemical forms of Cd, its distribution in leaves, and Cd accumulation and tolerance. An interspecific cross was carried out between A. halleri and the non-tolerant and non-hyperaccumulating relative A. lyrata providing progenies segregating for Cd tolerance and accumulation. Cd speciation and distribution were investigated using X-ray absorption spectroscopy and microfocused X-ray fluorescence. In A. lyrata and non-tolerant progenies, Cd was coordinated by S atoms only or with a small contribution of O groups. Interestingly, the proportion of O ligands increased in A. halleri and tolerant progenies, and they were predominant in most of them, while S ligands were still present. Therefore, the binding of Cd with O ligands was associated with Cd tolerance. In A. halleri, Cd was mainly located in the xylem, phloem, and mesophyll tissue, suggesting a reallocation process for Cd within the plant. The distribution of the metal at the cell level was further discussed. In A. lyrata, the vascular bundles were also Cd enriched, but the epidermis was richer in Cd as compared with the mesophyll. Cd was identified in trichomes of both species. This work demonstrated that both Cd speciation and localization were related to the tolerance character of the plant.
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Affiliation(s)
- Marie-Pierre Isaure
- Laboratoire de Chimie Analytique Bio-Inorganique et Environnement, Institut des sciences analytiques et de physico-chimie pour l'environnement et les matériaux (LCABIE/IPREM-UMR 5254), Université de Pau et des Pays de l'Adour and CNRS, Hélioparc, 2 Av. Pierre Angot, 64053 PAU Cedex 9, France
| | - Stéphanie Huguet
- Laboratoire de Chimie Analytique Bio-Inorganique et Environnement, Institut des sciences analytiques et de physico-chimie pour l'environnement et les matériaux (LCABIE/IPREM-UMR 5254), Université de Pau et des Pays de l'Adour and CNRS, Hélioparc, 2 Av. Pierre Angot, 64053 PAU Cedex 9, France
| | - Claire-Lise Meyer
- Laboratoire de Physiologie et de Génétique Moléculaire des Plantes (LPGMP), Université Libre de Bruxelles, Campus Plaine-ULB, CP 242, Bd du Triomphe, B-1050 Brussels, Belgium
| | - Hiram Castillo-Michel
- European Synchrotron Radiation Facility (ESRF), ID21 Beamline, BP 220, 38043 Grenoble, France
| | - Denis Testemale
- Université Grenoble Alpes, Institut Néel, 38000 Grenoble, France CNRS, Institut Néel, 38042 Grenoble France
| | - Delphine Vantelon
- SOLEIL Synchrotron, LUCIA Beamline, BP48, 91192 Gif sur Yvette, France
| | - Pierre Saumitou-Laprade
- Laboratoire de Génétique et Evolution des Populations Végétales (GEPV-UMR 8198), Université des Sciences et Technologies de Lille and CNRS- Lille 1, 59655 Villeneuve d'Ascq Cedex, France
| | - Nathalie Verbruggen
- Laboratoire de Physiologie et de Génétique Moléculaire des Plantes (LPGMP), Université Libre de Bruxelles, Campus Plaine-ULB, CP 242, Bd du Triomphe, B-1050 Brussels, Belgium
| | - Géraldine Sarret
- Institut des Sciences de la Terre (ISTerre), Université Joseph Fourier and CNRS, BP 53, 38041 Grenoble Cedex 9, France
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20
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Bioaccumulation of heavy metals in marine organisms from the Romanian sector of the Black Sea. N Biotechnol 2015; 32:369-78. [DOI: 10.1016/j.nbt.2014.11.004] [Citation(s) in RCA: 100] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2014] [Revised: 11/26/2014] [Accepted: 11/28/2014] [Indexed: 11/24/2022]
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21
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Lin YF, Severing EI, te Lintel Hekkert B, Schijlen E, Aarts MGM. A comprehensive set of transcript sequences of the heavy metal hyperaccumulator Noccaea caerulescens. FRONTIERS IN PLANT SCIENCE 2014; 5:261. [PMID: 24999345 PMCID: PMC4064536 DOI: 10.3389/fpls.2014.00261] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2013] [Accepted: 05/21/2014] [Indexed: 05/06/2023]
Abstract
Noccaea caerulescens is an extremophile plant species belonging to the Brassicaceae family. It has adapted to grow on soils containing high, normally toxic, concentrations of metals such as nickel, zinc, and cadmium. Next to being extremely tolerant to these metals, it is one of the few species known to hyperaccumulate these metals to extremely high concentrations in their aboveground biomass. In order to provide additional molecular resources for this model metal hyperaccumulator species to study and understand the mechanism of adaptation to heavy metal exposure, we aimed to provide a comprehensive database of transcript sequences for N. caerulescens. In this study, 23,830 transcript sequences (isotigs) with an average length of 1025 bp were determined for roots, shoots and inflorescences of N. caerulescens accession "Ganges" by Roche GS-FLEX 454 pyrosequencing. These isotigs were grouped into 20,378 isogroups, representing potential genes. This is a large expansion of the existing N. caerulescens transcriptome set consisting of 3705 unigenes. When translated and compared to a Brassicaceae proteome set, 22,232 (93.2%) of the N. caerulescens isotigs (corresponding to 19,191 isogroups) had a significant match and could be annotated accordingly. Of the remaining sequences, 98 isotigs resembled non-plant sequences and 1386 had no significant similarity to any sequence in the GenBank database. Among the annotated set there were many isotigs with similarity to metal homeostasis genes or genes for glucosinolate biosynthesis. Only for transcripts similar to Metallothionein3 (MT3), clear evidence for an additional copy was found. This comprehensive set of transcripts is expected to further contribute to the discovery of mechanisms used by N. caerulescens to adapt to heavy metal exposure.
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Affiliation(s)
- Ya-Fen Lin
- Laboratory of Genetics, Wageningen UniversityWageningen, Netherlands
| | - Edouard I. Severing
- Laboratory of Genetics, Wageningen UniversityWageningen, Netherlands
- Laboratory of Bioinformatics, Wageningen UniversityWageningen, Netherlands
| | - Bas te Lintel Hekkert
- Business Unit Bioscience, Plant Research International, Wageningen University and Research CentresWageningen, Netherlands
| | - Elio Schijlen
- Business Unit Bioscience, Plant Research International, Wageningen University and Research CentresWageningen, Netherlands
| | - Mark G. M. Aarts
- Laboratory of Genetics, Wageningen UniversityWageningen, Netherlands
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22
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Liu J, Shang W, Zhang X, Zhu Y, Yu K. Mn accumulation and tolerance in Celosia argentea Linn.: a new Mn-hyperaccumulating plant species. JOURNAL OF HAZARDOUS MATERIALS 2014; 267:136-141. [PMID: 24444455 DOI: 10.1016/j.jhazmat.2013.12.051] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2013] [Revised: 11/18/2013] [Accepted: 12/24/2013] [Indexed: 06/03/2023]
Abstract
Identifying a hyperaccumulator is an important groundwork for the phytoextraction of heavy metal-contaminated soil. Celosia argentea Linn., which grew on a Mn tailing wasteland, was found to hyperaccumulate Mn (14 362mgkg(-1) in leaf dry matter) in this study. To investigate Mn tolerance and accumulation in C. argentea, a hydroponic culture experiment was conducted in a greenhouse. Results showed that the biomass and the relative growth rate of C. argentea were insignificantly different (p>0.05) at the Mn supply level ranging from 2.5mgL(-1) (control) to 400mgL(-1). Manganese concentrations in leaves, stems, and roots reached maxima of 20228, 8872, and 2823mgkg(-1) at 600mgMnL(-1), respectively. The relative rate of Mn accumulation increased by 91.2% at 400mgMnL(-1). Over 95% of the total Mn taken up by C. argentea was translocated to shoots. Thus, C. argentea exhibits the basic characteristics of a Mn-hyperaccumulator. This species has great potential to remediate Mn-contaminated soil cheaply and can also aid the studies of Mn uptake, translocation, speciation, distribution and detoxification in plants.
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Affiliation(s)
- Jie Liu
- Guangxi Scientific Experiment Center of Mining, Metallurgy, and Environment, Guilin University of Technology, Guilin, Guangxi 541004, China.
| | - Weiwei Shang
- Guangxi Scientific Experiment Center of Mining, Metallurgy, and Environment, Guilin University of Technology, Guilin, Guangxi 541004, China
| | - Xuehong Zhang
- Guangxi Scientific Experiment Center of Mining, Metallurgy, and Environment, Guilin University of Technology, Guilin, Guangxi 541004, China
| | - Yinian Zhu
- Guangxi Scientific Experiment Center of Mining, Metallurgy, and Environment, Guilin University of Technology, Guilin, Guangxi 541004, China
| | - Ke Yu
- Guangxi Scientific Experiment Center of Mining, Metallurgy, and Environment, Guilin University of Technology, Guilin, Guangxi 541004, China
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23
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Alanne AL, Peräniemi S, Turhanen P, Tuomainen M, Vepsäläinen J, Tervahauta A. A bisphosphonate increasing the shoot biomass of the metal hyperaccumulator Noccaea caerulescens. CHEMOSPHERE 2014; 95:566-571. [PMID: 24182405 DOI: 10.1016/j.chemosphere.2013.09.116] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2013] [Revised: 09/16/2013] [Accepted: 09/25/2013] [Indexed: 06/02/2023]
Abstract
The feasibility of using the hyperaccumulator plant, Noccaea caerulescens, to remove trace elements from contaminated soils has been studied extensively. However, this plant creates too low biomass and an inappropriately slow growth rate for actual use in the field. Soluble bisphosphonates (BPs) are well-known pharmaceutical compounds e.g. affecting the osteoclast function in body through metabolic pathways. We devised an insoluble aminoBP, hydroxyundecylidene-1,1,-bisphosphonic acid with a long alkyl chain to be extremely effective metal chelator, and its possible use in phytoremediation deserves more attention. This article examines the effects of seven BPs on the shoot biomass, shoot metal concentrations and removal (Cd, Ni, Zn and Pb) by N. caerulescens in a pot experiment. The soluble BPs were incorporated into the soil in the irrigation water and the insoluble BP as solid after which the soil was spiked with metals. The insoluble aminoBP was found to considerably increase the shoot yield of N. caerulescens, especially in Ni-spiked soil, thus showing enhanced shoot Ni removal.
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Affiliation(s)
- Aino-Liisa Alanne
- School of Pharmacy, Biocenter Kuopio, University of Eastern Finland, P.O. Box 1627, FIN-70211 Kuopio, Finland.
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Koch MA, German DA. Taxonomy and systematics are key to biological information: Arabidopsis, Eutrema (Thellungiella), Noccaea and Schrenkiella (Brassicaceae) as examples. FRONTIERS IN PLANT SCIENCE 2013; 4:267. [PMID: 23914192 PMCID: PMC3728732 DOI: 10.3389/fpls.2013.00267] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2013] [Accepted: 07/02/2013] [Indexed: 05/20/2023]
Abstract
Taxonomy and systematics provide the names and evolutionary framework for any biological study. Without these names there is no access to a biological context of the evolutionary processes which gave rise to a given taxon: close relatives and sister species (hybridization), more distantly related taxa (ancestral states), for example. This is not only true for the single species a research project is focusing on, but also for its relatives, which might be selected for comparative approaches and future research. Nevertheless, taxonomical and systematic knowledge is rarely fully explored and considered across biological disciplines. One would expect the situation to be more developed with model organisms such as Noccaea, Arabidopsis, Schrenkiella and Eutrema (Thellungiella). However, we show the reverse. Using Arabidopsis halleri and Noccaea caerulescens, two model species among metal accumulating taxa, we summarize and reflect past taxonomy and systematics of Arabidopsis and Noccaea and provide a modern synthesis of taxonomic, systematic and evolutionary perspectives. The same is presented for several species of Eutrema s. l. and Schrenkiella recently appeared as models for studying stress tolerance in plants and widely known under the name Thellungiella.
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Affiliation(s)
- Marcus A. Koch
- Department of Biodiversity and Plant Systematics, Center for Organismal Studies Heidelberg, Heidelberg UniversityHeidelberg, Germany
| | - Dmitry A. German
- Department of Biodiversity and Plant Systematics, Center for Organismal Studies Heidelberg, Heidelberg UniversityHeidelberg, Germany
- South-Siberian Botanical Garden, Altai State UniversityBarnaul, Russia
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Tolerance to cadmium in plants: the special case of hyperaccumulators. Biometals 2013; 26:633-8. [DOI: 10.1007/s10534-013-9659-6] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2013] [Accepted: 07/10/2013] [Indexed: 10/26/2022]
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Lu L, Tian S, Zhang J, Yang X, Labavitch JM, Webb SM, Latimer M, Brown PH. Efficient xylem transport and phloem remobilization of Zn in the hyperaccumulator plant species Sedum alfredii. THE NEW PHYTOLOGIST 2013; 198:721-731. [PMID: 23421478 DOI: 10.1111/nph.12168] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2012] [Accepted: 01/04/2013] [Indexed: 05/09/2023]
Abstract
Sedum alfredii is one of a few species known to hyperaccumulate zinc (Zn) and cadmium (Cd). Xylem transport and phloem remobilization of Zn in hyperaccumulating (HP) and nonhyperaccumulating (NHP) populations of S. alfredii were compared. Micro-X-ray fluorescence (μ-XRF) images of Zn in the roots of the two S. alfredii populations suggested an efficient xylem loading of Zn in HP S. alfredii, confirmed by the seven-fold higher Zn concentrations detected in the xylem sap collected from HP, when compared with NHP, populations. Zn was predominantly transported as aqueous Zn (> 55.9%), with the remaining proportion (36.7-42.3%) associated with the predominant organic acid, citric acid, in the xylem sap of HP S. alfredii. The stable isotope (68)Zn was used to trace Zn remobilization from mature leaves to new growing leaves for both populations. Remobilization of (68)Zn was seven-fold higher in HP than in NHP S. alfredii. Subsequent analysis by μ-XRF, combined with LA-ICPMS (laser ablation-inductively coupled plasma mass spectrometry), confirmed the enhanced ability of HP S. alfredii to remobilize Zn and to preferentially distribute the metal to mesophyll cells surrounding phloem in the new leaves. The results suggest that Zn hyperaccumulation by HP S. alfredii is largely associated with enhanced xylem transport and phloem remobilization of the metal. To our knowledge, this report is the first to reveal enhanced remobilization of metal by phloem transport in hyperaccumulators.
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Affiliation(s)
- Lingli Lu
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Environmental & Resource Science, Zhejiang University, Hangzhou, 310058, China
| | - Shengke Tian
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Environmental & Resource Science, Zhejiang University, Hangzhou, 310058, China
- Department of Plant Sciences, University of California, Davis, CA, 95616, USA
| | - Jie Zhang
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Environmental & Resource Science, Zhejiang University, Hangzhou, 310058, China
| | - Xiaoe Yang
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Environmental & Resource Science, Zhejiang University, Hangzhou, 310058, China
| | - John M Labavitch
- Department of Plant Sciences, University of California, Davis, CA, 95616, USA
| | - Samuel M Webb
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA
| | - Matthew Latimer
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA
| | - Patrick H Brown
- Department of Plant Sciences, University of California, Davis, CA, 95616, USA
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Transgenic Approaches to Enhance Phytoremediation of Heavy Metal-Polluted Soils. SOIL BIOLOGY 2013. [DOI: 10.1007/978-3-642-35564-6_12] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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