Neural spike sorting using mathematical morphology, multiwavelets transform and hierarchical clustering

Graph neural networks in EEG spike detection

OBJECTIVE

This study develops new machine learning architectures that are more adept at detecting interictal epileptiform discharges (IEDs) in scalp EEG. A comparison of results using the average precision (AP) metric is made with the proposed models on two datasets obtained from Baptist Hospital of Miami and Temple University Hospital.

METHODS

Applying graph neural networks (GNNs) on functional connectivity (FC) maps of different frequency sub-bands to yield a novel architecture we call FC-GNN. Attention mechanism is applied on a complete graph to let the neural network select its important edges, hence bypassing the extraction of features, a model we refer to as CA-GNN.

RESULTS

On the Baptist Hospital dataset, the results were as follows: Vanilla Self-Attention →0.9029±0.0431, Hierarchical Attention →0.8546±0.0587, Vanilla Visual Geometry Group (VGG) →0.92±0.0618, Satelight →0.9219±0.046, FC-GNN →0.9731±0.0187, and CA-GNN →0.9788±0.0125. In the same order, the results on the Temple University Hospital dataset are 0.9692, 0.9113, 0.97, 0.9575, 0.963, and 0.9879.

CONCLUSION

Based on the good results they yield, GNNs prove to have a strong potential in detecting epileptogenic activity.

SIGNIFICANCE

This study opens the door for the discovery of the powerful role played by GNNs in capturing IEDs, which is an essential step for identifying the epileptogenic networks of the affected brain and hence improving the prospects for more accurate 3D source localization.

Perceptual learning as a result of concerted changes in prefrontal and visual cortex

Our perceptual ability remarkably improves with training. Some studies on visual perceptual learning have shown refined neural representation of the trained stimulus in the visual cortex, whereas others have exclusively argued for improved readout and decision-making processes in the frontoparietal cortex. The mixed results have rendered the underlying neural mechanisms puzzling and hotly debated. By simultaneously recording from monkey visual area V4 and ventrolateral prefrontal cortex (PFC) implanted with microelectrode arrays, we dissected learning-induced cortical changes over the course of training the monkeys in a global form detection task. Decoding analysis dissociated two distinct components of neuronal population codes that were progressively and markedly enhanced in both V4 and PFC. One component was closely related to the target stimulus feature and was subject to task-dependent top-down modulation; it emerged earlier in V4 than PFC and its enhancement was specific to the trained configuration of the target stimulus. The other component of the neural code was entirely related to the animal's behavioral choice; it emerged earlier in PFC than V4 and its enhancement completely generalized to an untrained stimulus configuration. These results implicate two concurrent and synergistic learning processes: a perceptual process that is specific to the details of the trained stimulus feature and a cognitive process that is dependent on the total amount of learning experience in the trained task. When combined, these two learning processes were well predictive of the animal's learning behavior.

NeuroQuest: a comprehensive analysis tool for extracellular neural ensemble recordings

Analyzing the massive amounts of neural data collected using microelectrodes to extract biologically relevant information is a major challenge. Many scientific findings rest on the ability to overcome these challenges and to standardize experimental analysis across labs. This can be facilitated in part through comprehensive, efficient and practical software tools disseminated to the community at large. We have developed a comprehensive, MATLAB-based software package - entitled NeuroQuest - that bundles together a number of advanced neural signal processing algorithms in a user-friendly environment. Results demonstrate the efficiency and reliability of the software compared to other software packages, and versatility over a wide range of experimental conditions.