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Lin Z, Lei C, Yang L. Modern Image-Guided Surgery: A Narrative Review of Medical Image Processing and Visualization. SENSORS (BASEL, SWITZERLAND) 2023; 23:9872. [PMID: 38139718 PMCID: PMC10748263 DOI: 10.3390/s23249872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2023] [Revised: 11/15/2023] [Accepted: 12/13/2023] [Indexed: 12/24/2023]
Abstract
Medical image analysis forms the basis of image-guided surgery (IGS) and many of its fundamental tasks. Driven by the growing number of medical imaging modalities, the research community of medical imaging has developed methods and achieved functionality breakthroughs. However, with the overwhelming pool of information in the literature, it has become increasingly challenging for researchers to extract context-relevant information for specific applications, especially when many widely used methods exist in a variety of versions optimized for their respective application domains. By being further equipped with sophisticated three-dimensional (3D) medical image visualization and digital reality technology, medical experts could enhance their performance capabilities in IGS by multiple folds. The goal of this narrative review is to organize the key components of IGS in the aspects of medical image processing and visualization with a new perspective and insights. The literature search was conducted using mainstream academic search engines with a combination of keywords relevant to the field up until mid-2022. This survey systemically summarizes the basic, mainstream, and state-of-the-art medical image processing methods as well as how visualization technology like augmented/mixed/virtual reality (AR/MR/VR) are enhancing performance in IGS. Further, we hope that this survey will shed some light on the future of IGS in the face of challenges and opportunities for the research directions of medical image processing and visualization.
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Affiliation(s)
- Zhefan Lin
- School of Mechanical Engineering, Zhejiang University, Hangzhou 310030, China;
- ZJU-UIUC Institute, International Campus, Zhejiang University, Haining 314400, China;
| | - Chen Lei
- ZJU-UIUC Institute, International Campus, Zhejiang University, Haining 314400, China;
| | - Liangjing Yang
- School of Mechanical Engineering, Zhejiang University, Hangzhou 310030, China;
- ZJU-UIUC Institute, International Campus, Zhejiang University, Haining 314400, China;
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Tuna EE, Franson D, Seiberlich N, Çavuşoğlu MC. Deformable cardiac surface tracking by adaptive estimation algorithms. Sci Rep 2023; 13:1387. [PMID: 36697497 PMCID: PMC9877032 DOI: 10.1038/s41598-023-28578-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 01/20/2023] [Indexed: 01/26/2023] Open
Abstract
This study presents a particle filter based framework to track cardiac surface from a time sequence of single magnetic resonance imaging (MRI) slices with the future goal of utilizing the presented framework for interventional cardiovascular magnetic resonance procedures, which rely on the accurate and online tracking of the cardiac surface from MRI data. The framework exploits a low-order parametric deformable model of the cardiac surface. A stochastic dynamic system represents the cardiac surface motion. Deformable models are employed to introduce shape prior to control the degree of the deformations. Adaptive filters are used to model complex cardiac motion in the dynamic model of the system. Particle filters are utilized to recursively estimate the current state of the system over time. The proposed method is applied to recover biventricular deformations and validated with a numerical phantom and multiple real cardiac MRI datasets. The algorithm is evaluated with multiple experiments using fixed and varying image slice planes at each time step. For the real cardiac MRI datasets, the average root-mean-square tracking errors of 2.61 mm and 3.42 mm are reported respectively for the fixed and varying image slice planes. This work serves as a proof-of-concept study for modeling and tracking the cardiac surface deformations via a low-order probabilistic model with the future goal of utilizing this method for the targeted interventional cardiac procedures under MR image guidance. For the real cardiac MRI datasets, the presented method was able to track the points-of-interests located on different sections of the cardiac surface within a precision of 3 pixels. The analyses show that the use of deformable cardiac surface tracking algorithm can pave the way for performing precise targeted intracardiac ablation procedures under MRI guidance. The main contributions of this work are twofold. First, it presents a framework for the tracking of whole cardiac surface from a time sequence of single image slices. Second, it employs adaptive filters to incorporate motion information in the tracking of nonrigid cardiac surface motion for temporal coherence.
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Affiliation(s)
- E Erdem Tuna
- Department of Electrical, Computer, and Systems Engineering, Case Western Reserve University, Cleveland, OH, 44106, USA.
| | - Dominique Franson
- Department of Biomedical Engineering, Case Western Reserve University, Cleveland, OH, 44106, USA
| | - Nicole Seiberlich
- Department of Radiology, Michigan Medicine, University of Michigan, Ann-Anbor, MI, 48109, USA
| | - M Cenk Çavuşoğlu
- Department of Electrical, Computer, and Systems Engineering, Case Western Reserve University, Cleveland, OH, 44106, USA
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Sun D, Wang X, Man Y, Deng N, Peng Z. A Siamese tracker with "dynamic-static" dual-template fusion and dynamic template adaptive update. Front Neurorobot 2023; 16:1094892. [PMID: 36714156 PMCID: PMC9874110 DOI: 10.3389/fnbot.2022.1094892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Accepted: 12/23/2022] [Indexed: 01/13/2023] Open
Abstract
In recent years, visual tracking algorithms based on Siamese networks have attracted attention for their desirable balance between speed and accuracy. The performance of such tracking methods relies heavily on target templates. Static templates cannot cope with the adverse effects of target appearance change. The dynamic template method, with a template update mechanism, can adapt to the change in target appearance well, but it also causes new problems, which may lead the template to be polluted by noise. Based on the DaSiamRPN and UpdateNet template update networks, a Siamese tracker with "dynamic-static" dual-template fusion and dynamic template adaptive update is proposed in this paper. The new method combines a static template and a dynamic template that is updated in real time for object tracking. An adaptive update strategy was adopted when updating the dynamic template, which can not only help adjust to the changes in the object appearance, but also suppress the adverse effects of noise interference and contamination of the template. The experimental results showed that the robustness and EAO of the proposed method were 23% and 9.0% higher than those of the basic algorithm on the VOT2016 dataset, respectively, and that the precision and success were increased by 0.8 and 0.4% on the OTB100 dataset, respectively. The most comprehensive real-time tracking performance was obtained for the above two large public datasets.
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Zhang Y, Liu G, Huang H, Xiong R. Fast visual tracking with lightweight Siamese network and template-guided learning. Knowl Based Syst 2022. [DOI: 10.1016/j.knosys.2022.110037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Zhang Y, Yu C, Liu H, Chen X, Lei Y, Pang T, Zhang J. An Integrated Goat Head Detection and Automatic Counting Method Based on Deep Learning. Animals (Basel) 2022; 12:1810. [PMID: 35883357 PMCID: PMC9312201 DOI: 10.3390/ani12141810] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Revised: 07/14/2022] [Accepted: 07/14/2022] [Indexed: 12/05/2022] Open
Abstract
Goat farming is one of the pillar industries for sustainable development of national economies in some countries and plays an active role in social and economic development. In order to realize the precision and intelligence of goat breeding, this paper describes an integrated goat detection and counting method based on deep learning. First, we constructed a new dataset of video images of goats for the object tracking task. Then, we took YOLOv5 as the baseline of the object detector and improved it using a series of advanced methods, including: using RandAugment to explore suitable data augmentation strategies in a real goat barn environment, using AF-FPN to improve the network's ability to represent multi-scale objects, and using the Dynamic Head framework to unify the attention mechanism with the detector's heads to improve its performance. The improved detector achieved 92.19% mAP, a significant improvement compared to the 84.26% mAP of the original YOLOv5. In addition, we also input the information obtained by the detector into DeepSORT for goat tracking and counting. The average overlap rate of our proposed method is 89.69%, which is significantly higher than the 82.78% of the original combination of YOLOv5 and DeepSORT. In order to avoid double counting as much as possible, goats were counted using the single-line counting based on the results of goat head tracking, which can support practical applications.
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Affiliation(s)
- Yu Zhang
- College of Information Engineering, Sichuan Agricultural University, Ya’an 625000, China; (Y.Z.); (C.Y.); (H.L.); (Y.L.); (J.Z.)
| | - Chengjun Yu
- College of Information Engineering, Sichuan Agricultural University, Ya’an 625000, China; (Y.Z.); (C.Y.); (H.L.); (Y.L.); (J.Z.)
| | - Hui Liu
- College of Information Engineering, Sichuan Agricultural University, Ya’an 625000, China; (Y.Z.); (C.Y.); (H.L.); (Y.L.); (J.Z.)
| | - Xiaoyan Chen
- College of Information Engineering, Sichuan Agricultural University, Ya’an 625000, China; (Y.Z.); (C.Y.); (H.L.); (Y.L.); (J.Z.)
- Sichuan Key Laboratory of Agricultural Information Engineering, Ya’an 625000, China
| | - Yujie Lei
- College of Information Engineering, Sichuan Agricultural University, Ya’an 625000, China; (Y.Z.); (C.Y.); (H.L.); (Y.L.); (J.Z.)
| | - Tao Pang
- College of Mechanical and Electrical Engineering, Sichuan Agricultural University, Ya’an 625000, China;
| | - Jie Zhang
- College of Information Engineering, Sichuan Agricultural University, Ya’an 625000, China; (Y.Z.); (C.Y.); (H.L.); (Y.L.); (J.Z.)
- Sichuan Key Laboratory of Agricultural Information Engineering, Ya’an 625000, China
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Wu X, Xu J, Zhu Z, Wang Y, Zhang Q, Tang S, Liang M, Cao B. Correlation filter tracking algorithm based on spatial-temporal regularization and context awareness. APPL INTELL 2022. [DOI: 10.1007/s10489-022-03458-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Hu X, Liu H, Chen Y, Hui Y, Liang Y, Wu X. Siamese Network Object Tracking Algorithm Combining Attention Mechanism and Correlation Filter Theory. INT J PATTERN RECOGN 2021. [DOI: 10.1142/s0218001422500033] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Aiming to solve the problem of tracking drift during movement, which was caused by the lack of discriminability of the feature information and the failure of a fixed template to adapt to the change of object appearance, the paper proposes an object tracking algorithm combining attention mechanism and correlation filter theory based on the framework of full convolutional Siamese neural networks. Firstly, the apparent information is processed by using the attention mechanism thought, where the object and search area features are optimized according to the spatial attention and channel attention module. At the same time, the cross-attention module is introduced to process the template branch and search area branch, respectively, which makes full use of the diversified context information of the search area. Then, the background perception correlation filter model with scale adaptation and learning rate adjustment is adopted into the model construction, using as a layer in the network model to realize the object template update. Finally, the optimal object location is determined according to the confidence map with similarity calculation. Experimental results show that the designed method in the paper can promote the object tracking performance under various challenging environments effectively; the success rate increases by 16.2%, and the accuracy rate increases by 16%.
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Affiliation(s)
- Xiuhua Hu
- School of Computer Science and Engineering, Xi’an Technological University, Xian, Shaanxi, P. R. China
- State and Provincial Joint Engineering Lab. of Advanced Network, Monitoring and Control Xi’an, Shanxi, P. R. China
| | - Huan Liu
- School of Computer Science and Engineering, Xi’an Technological University, Xian, Shaanxi, P. R. China
- State and Provincial Joint Engineering Lab. of Advanced Network, Monitoring and Control Xi’an, Shanxi, P. R. China
| | - Yuan Chen
- School of Computer Science and Engineering, Xi’an Technological University, Xian, Shaanxi, P. R. China
- State and Provincial Joint Engineering Lab. of Advanced Network, Monitoring and Control Xi’an, Shanxi, P. R. China
| | - Yan Hui
- School of Computer Science and Engineering, Xi’an Technological University, Xian, Shaanxi, P. R. China
- State and Provincial Joint Engineering Lab. of Advanced Network, Monitoring and Control Xi’an, Shanxi, P. R. China
| | - Yingyu Liang
- School of Computer Science and Engineering, Xi’an Technological University, Xian, Shaanxi, P. R. China
- State and Provincial Joint Engineering Lab. of Advanced Network, Monitoring and Control Xi’an, Shanxi, P. R. China
| | - Xi Wu
- School of Computer Science and Engineering, Xi’an Technological University, Xian, Shaanxi, P. R. China
- State and Provincial Joint Engineering Lab. of Advanced Network, Monitoring and Control Xi’an, Shanxi, P. R. China
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