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Ren X, Sun D, Lv J, Gao B, Jia S, Bian X, Zhao K, Li J, Liu P, Li J. Chromosome-level genome of the long-tailed marine-living ornate spiny lobster, Panulirus ornatus. Sci Data 2024; 11:662. [PMID: 38909031 PMCID: PMC11193758 DOI: 10.1038/s41597-024-03512-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Accepted: 06/12/2024] [Indexed: 06/24/2024] Open
Abstract
Recent conservation efforts to protect rare and endangered aquatic species have intensified. Nevertheless, the ornate spiny lobster (Panulirus ornatus), which is prevalent in the Indo-Pacific waters, has been largely ignored. In the absence of a detailed genomic reference, the conservation and population genetics of this crustacean are poorly understood. Here, We assembled a comprehensive chromosome-level genome for P. ornatus. This genome-among the most detailed for lobsters-spans 2.65 Gb with a contig N50 of 51.05 Mb, and 99.11% of the sequences with incorporated to 73 chromosomes. The ornate spiny lobster genome comprises 65.67% repeat sequences and 22,752 protein-coding genes with 99.20% of the genes functionally annotated. The assembly of the P. ornatus genome provides valuable insights into comparative crustacean genomics and endangered species conservation, and lays the groundwork for future research on the speciation, ecology, and evolution of the ornate spiny lobster.
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Affiliation(s)
- Xianyun Ren
- National Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China
- Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao, Shandong, 266237, China
| | - Dongfang Sun
- National Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China
- Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao, Shandong, 266237, China
| | - Jianjian Lv
- National Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China
- Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao, Shandong, 266237, China
| | - Baoquan Gao
- National Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China
- Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao, Shandong, 266237, China
| | - Shaoting Jia
- National Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China
- Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao, Shandong, 266237, China
| | - Xueqiong Bian
- National Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China
- Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao, Shandong, 266237, China
- College of Fisheries and Life Science, Shanghai Ocean University, Shanghai, PR China
| | - Kuangcheng Zhao
- National Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China
- Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao, Shandong, 266237, China
| | - Jitao Li
- National Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China
- Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao, Shandong, 266237, China
| | - Ping Liu
- National Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.
- Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao, Shandong, 266237, China.
| | - Jian Li
- National Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.
- Laboratory for Marine Fisheries Science and Food Production Processes, Laoshan Laboratory, Qingdao, Shandong, 266237, China.
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Peng C, FanChao M. Fault Detection of Urban Wastewater Treatment Process Based on Combination of Deep Information and Transformer Network. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2024; 35:8124-8133. [PMID: 37015564 DOI: 10.1109/tnnls.2022.3224804] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
As one of the hot issues of concerns during modern social development, the wastewater treatment process is acknowledged to be a process with complex biochemical reactions and susceptible to an external environment, featuring strong nonlinear and time correlation characteristics, which are difficult for traditional mechanism-based models to tackle. For many classical data-driven fault detection methods, a complete retraining process is necessary to monitor every new fault, and most of the current neural network-based strategies rarely achieve satisfactory monitoring accuracy or robustness either. Giving full consideration to the aforementioned problems, this article takes advantage of position encoding, residual connection, and multihead attention mechanism embedded in the Transformer structure to establish an effective and efficient wastewater treatment process fault detection model, where offline modeling and online monitoring are performed successively to achieve accurate detection of the faults. In the experimental part, the advantages of the proposed method are strongly verified through the simulation monitoring of 27 faults on the benchmark simulation model 1 (BSM1), where the false alarm rate (FAR) and miss alarm rate (MAR) of the established method are proved to be significantly lower than those of the compared state-of-the-art methods.
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Li Q, Wang Y, Dong J, Zhang C, Peng K. Multi-node knowledge graph assisted distributed fault detection for large-scale industrial processes based on graph attention network and bidirectional LSTMs. Neural Netw 2024; 173:106210. [PMID: 38417353 DOI: 10.1016/j.neunet.2024.106210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Revised: 01/29/2024] [Accepted: 02/23/2024] [Indexed: 03/01/2024]
Abstract
Modern industrial processes are characterized by extensive, multiple operation units, and strong coupled correlation of subsystems. Fault detection of large-scale processes is still a challenging problem, especially for tandem plant-wide processes in multiple fields such as water treatment process. In this paper, a novel distributed graph attention network-bidirectional long short-term memory (D-GATBLSTM) fault detection model is proposed for large-scale industrial processes. Firstly, a multi-node knowledge graph (MNKG) is constructed using a joint data and knowledge driven strategy. Secondly, for large-scale industrial process, a global feature extractor of graph attention networks (GATs) is constructed, on the basis of which, sub-blocks are decomposed based on MNKG. Then, local feature extractors of bidirectional long short-term memory (Bi-LSTM) for each sub-block are constructed, in which correlations among multiple sub-blocks are considered. Finally, a multi-subblock fusion collaborative prediction model is constructed and the comprehensive fault detection results are given by the grid search method. The effectiveness of our D-GATBLSTM is exemplified in a secure water treatment process case, where it outperforms baseline models compared, with 27% improvement in precision, 15% increase in recall, and overall F-score enhancement of 0.22.
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Affiliation(s)
- Qing Li
- Key Laboratory of Knowledge Automation for Industrial Processes of Ministry of Education, University of Science and Technology Beijing, Beijing, 100083, PR China; School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing, 100083, PR China
| | - Yangfan Wang
- School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing, 100083, PR China
| | - Jie Dong
- Key Laboratory of Knowledge Automation for Industrial Processes of Ministry of Education, University of Science and Technology Beijing, Beijing, 100083, PR China; School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing, 100083, PR China; National Engineering Research Center for Advanced Rolling and Intelligent Manufacturing, University of Science and Technology Beijing, Beijing, 100083, PR China
| | - Chi Zhang
- School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing, 100083, PR China
| | - Kaixiang Peng
- Key Laboratory of Knowledge Automation for Industrial Processes of Ministry of Education, University of Science and Technology Beijing, Beijing, 100083, PR China; School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing, 100083, PR China; National Engineering Research Center for Advanced Rolling and Intelligent Manufacturing, University of Science and Technology Beijing, Beijing, 100083, PR China.
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Song P, Zhao C, Huang B. MPGE and RootRank: A sufficient root cause characterization and quantification framework for industrial process faults. Neural Netw 2023; 161:397-417. [PMID: 36780862 DOI: 10.1016/j.neunet.2023.01.030] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Revised: 01/18/2023] [Accepted: 01/23/2023] [Indexed: 02/05/2023]
Abstract
Root cause diagnosis can locate abnormalities of industrial processes, ensuring production safety and manufacturing efficiency. However, existing root cause diagnosis models only consider pairwise direct causality and ignore the multi-level fault propagation, which may lead to incomplete root cause descriptions and ambiguous root cause candidates. To address the above issue, a novel framework, named multi-level predictive graph extraction (MPGE) and RootRank scoring, is proposed and applied to the root cause diagnosis for industrial processes. In this framework, both direct and indirect Granger causalities are characterized by multi-level predictive relationships to provide a sufficient characterization of root cause variables. First, a predictive graph structure with a sparse constrained adjacency matrix is constructed to describe the information transmission between variables. The information of variables is deeply fused according to the adjacency matrix to consider multi-level fault propagation. Then, a hierarchical adjacency pruning (HAP) mechanism is designed to automatically capture vital predictive relationships through adjacency redistribution. In this way, the multi-level causalities between variables are extracted to fully describe both direct and indirect fault propagation and highlight the root cause. Further, a RootRank scoring algorithm is proposed to analyze the predictive graph and quantify the fault propagation contribution of each variable, thereby giving definite root cause identification results. Three examples are adopted to verify the diagnostic performance of the proposed framework, including a numerical example, the Tennessee Eastman benchmark process, and a real cut-made process of cigarette. Both theoretical analysis and experimental verification show the high interpretability and reliability of the proposed framework.
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Affiliation(s)
- Pengyu Song
- State Key Laboratory of Industrial Control Technology, College of Control Science and Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Chunhui Zhao
- State Key Laboratory of Industrial Control Technology, College of Control Science and Engineering, Zhejiang University, Hangzhou, 310027, China.
| | - Biao Huang
- Department of Chemical and Materials Engineering, University of Alberta, Edmonton, AB T6G 2G6, Canada
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Gravanis G, Dragogias I, Papakiriakos K, Ziogou C, Diamantaras K. Fault detection and diagnosis for non-linear processes empowered by dynamic neural networks. Comput Chem Eng 2022. [DOI: 10.1016/j.compchemeng.2021.107531] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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6
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Cui P, Wang X, Yang Y. Nonparametric manifold learning approach for improved process monitoring. CAN J CHEM ENG 2022. [DOI: 10.1002/cjce.24066] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Ping Cui
- Key Laboratory of Ministry of Education in System Control and Information Processing, Department of Automation Shanghai Jiao Tong University Shanghai China
| | - Xuhong Wang
- Key Laboratory of Ministry of Education in System Control and Information Processing, Department of Automation Shanghai Jiao Tong University Shanghai China
| | - Yupu Yang
- Key Laboratory of Ministry of Education in System Control and Information Processing, Department of Automation Shanghai Jiao Tong University Shanghai China
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Hu Z, Peng J, Zhao H. Uncorrelated discriminant graph embedding for fault classification. CAN J CHEM ENG 2021. [DOI: 10.1002/cjce.24045] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Zhengwei Hu
- Key Laboratory of Advanced Control and Optimization for Chemical Processes of Ministry of Education, School of Information Science and Engineering East China University of Science and Technology Shanghai China
| | - Jingchao Peng
- Key Laboratory of Advanced Control and Optimization for Chemical Processes of Ministry of Education, School of Information Science and Engineering East China University of Science and Technology Shanghai China
| | - Haitao Zhao
- Key Laboratory of Advanced Control and Optimization for Chemical Processes of Ministry of Education, School of Information Science and Engineering East China University of Science and Technology Shanghai China
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Yang D, Karimi HR, Sun K. Residual wide-kernel deep convolutional auto-encoder for intelligent rotating machinery fault diagnosis with limited samples. Neural Netw 2021; 141:133-144. [PMID: 33901878 DOI: 10.1016/j.neunet.2021.04.003] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2020] [Revised: 02/28/2021] [Accepted: 04/01/2021] [Indexed: 11/27/2022]
Abstract
This paper deals with the development of a novel deep learning framework to achieve highly accurate rotating machinery fault diagnosis using residual wide-kernel deep convolutional auto-encoder. Unlike most existing methods, in which the input data is processed by fast Fourier transform (FFT) and wavelet transform, this paper aims to learn important features from limited raw vibration signals. Firstly, the wide-kernel convolutional layer is introduced in the convolutional auto-encoder that can ensure the model can learn effective features from the data without any signal processing. Secondly, the residual learning block is introduced in convolutional auto-encoder that can ensure the model with sufficient depth without gradient vanishing and overfitting problems. Thirdly, convolutional auto-encoder can learn constructive features without massive data. To evaluate the performance of the proposed model, Case Western Reserve University (CWRU) bearing dataset and Southeast University (SEU) gearbox dataset are used to test. The experiment results and comparisons verify the denoising and feature extraction ability of the proposed model in the case of very few training samples.
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Affiliation(s)
- Daoguang Yang
- Department of Mechnical Engineering, Politecnico di Milano, Milan, Italy.
| | - Hamid Reza Karimi
- Department of Mechnical Engineering, Politecnico di Milano, Milan, Italy.
| | - Kangkang Sun
- Department of Mechnical Engineering, Politecnico di Milano, Milan, Italy.
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Wang K, Yuan X, Chen J, Wang Y. Supervised and semi-supervised probabilistic learning with deep neural networks for concurrent process-quality monitoring. Neural Netw 2020; 136:54-62. [PMID: 33445005 DOI: 10.1016/j.neunet.2020.11.006] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2020] [Revised: 09/20/2020] [Accepted: 11/16/2020] [Indexed: 11/30/2022]
Abstract
Concurrent process-quality monitoring helps discover quality-relevant process anomalies and quality-irrelevant process anomalies. It especially works well in chemical plants with faults that cause quality problems. Traditional monitoring strategies are limitedly applied in chemical plants because quality targets in training data are insufficient. It is hard for inflexible models to fully capture the strongly nonlinear process-quality correlations. Also, deterministic models are mapped from process variables to qualities without any consideration of uncertainties. Simultaneously, a slow sampling rate for quality variables is ubiquitous in chemical plants since a product quality test is often time-consuming and expensive. Motivated by these limitations, this paper proposes a new concurrent process-quality monitoring scheme based on a probabilistic generative deep learning model developed from variational autoencoder. The supervised model is firstly developed and then the semi-supervised version is extended to solve the issue of missing targets. Especially, the semi-supervised learning algorithm is accomplished with an optimal parameter estimation in the light of maximum likelihood principle and no any hyperparameters are introduced. Two case studies validate that the proposed method effectively outperforms the other comparative methods in concurrent process-quality monitoring.
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Affiliation(s)
- Kai Wang
- School of Automation, Central South University, Changsha, 410083, China.
| | - Xiaofeng Yuan
- School of Automation, Central South University, Changsha, 410083, China.
| | - Junghui Chen
- Department of Chemical Engineering, Chung-YuanChristian University, Chungli, Taoyuan 32023, Taiwan, ROC.
| | - Yalin Wang
- School of Automation, Central South University, Changsha, 410083, China.
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Partial transfer learning in machinery cross-domain fault diagnostics using class-weighted adversarial networks. Neural Netw 2020; 129:313-322. [PMID: 32585512 DOI: 10.1016/j.neunet.2020.06.014] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2019] [Revised: 06/03/2020] [Accepted: 06/12/2020] [Indexed: 11/22/2022]
Abstract
Recently, transfer learning has been receiving growing interests in machinery fault diagnosis due to its strong generalization across different industrial scenarios. The existing methods generally assume identical label spaces, and propose minimizing marginal distribution discrepancy between source and target domains. However, this assumption usually does not hold in real industries, where testing data mostly contain a subspace of the source label space. Therefore, transferring diagnosis knowledge from a comprehensive source domain to a target domain with limited machine conditions is motivated. This challenging partial transfer learning problem is addressed in this study using deep learning-based domain adaptation method. A class weighted adversarial neural network is proposed to encourage positive transfer of the shared classes and ignore the source outliers. Experimental results on two rotating machinery datasets suggest the proposed method is promising for partial transfer learning.
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Dong J, Zhang C, Peng K. A novel industrial process monitoring method based on improved local tangent space alignment algorithm. Neurocomputing 2020. [DOI: 10.1016/j.neucom.2020.04.053] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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12
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Temporal-Spatial Neighborhood Enhanced Sparse Autoencoder for Nonlinear Dynamic Process Monitoring. Processes (Basel) 2020. [DOI: 10.3390/pr8091079] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Data-based process monitoring methods have received tremendous attention in recent years, and modern industrial process data often exhibit dynamic and nonlinear characteristics. Traditional autoencoders, such as stacked denoising autoencoders (SDAEs), have excellent nonlinear feature extraction capabilities, but they ignore the dynamic correlation between sample data. Feature extraction based on manifold learning using spatial or temporal neighbors has been widely used in dynamic process monitoring in recent years, but most of them use linear features and do not take into account the complex nonlinearities of industrial processes. Therefore, a fault detection scheme based on temporal-spatial neighborhood enhanced sparse autoencoder is proposed in this paper. Firstly, it selects the temporal neighborhood and spatial neighborhood of the sample at the current time within the time window with a certain length, the spatial similarity and time serial correlation are used for weighted reconstruction, and the reconstruction combines the current sample as the input of the sparse stack autoencoder (SSAE) to extract the correlation features between the current sample and the neighborhood information. Two statistics are constructed for fault detection. Considering that both types of neighborhood information contain spatial-temporal structural features, Bayesian fusion strategy is used to integrate the two parts of the detection results. Finally, the superiority of the method in this paper is illustrated by a numerical example and the Tennessee Eastman process.
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Li J, Yan X. Process monitoring using principal component analysis and stacked autoencoder for linear and nonlinear coexisting industrial processes. J Taiwan Inst Chem Eng 2020. [DOI: 10.1016/j.jtice.2020.06.001] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Yan S, Yan X. Quality-Driven Autoencoder for Nonlinear Quality-Related and Process-Related Fault Detection Based on Least-Squares Regularization and Enhanced Statistics. Ind Eng Chem Res 2020. [DOI: 10.1021/acs.iecr.0c00735] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Shifu Yan
- Key Laboratory of Advanced Control and Optimization for Chemical Processes of Ministry of Education, East China University of Science and Technology, Shanghai 200237, P. R. China
| | - Xuefeng Yan
- Key Laboratory of Advanced Control and Optimization for Chemical Processes of Ministry of Education, East China University of Science and Technology, Shanghai 200237, P. R. China
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