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Ma H, Qi Y, Gong P, Zhang J, Lu WL, Feng J. Self-Organization of Nonlinearly Coupled Neural Fluctuations Into Synergistic Population Codes. Neural Comput 2023; 35:1820-1849. [PMID: 37725705 DOI: 10.1162/neco_a_01612] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 06/26/2023] [Indexed: 09/21/2023]
Abstract
Neural activity in the brain exhibits correlated fluctuations that may strongly influence the properties of neural population coding. However, how such correlated neural fluctuations may arise from the intrinsic neural circuit dynamics and subsequently affect the computational properties of neural population activity remains poorly understood. The main difficulty lies in resolving the nonlinear coupling between correlated fluctuations with the overall dynamics of the system. In this study, we investigate the emergence of synergistic neural population codes from the intrinsic dynamics of correlated neural fluctuations in a neural circuit model capturing realistic nonlinear noise coupling of spiking neurons. We show that a rich repertoire of spatial correlation patterns naturally emerges in a bump attractor network and further reveals the dynamical regime under which the interplay between differential and noise correlations leads to synergistic codes. Moreover, we find that negative correlations may induce stable bound states between two bumps, a phenomenon previously unobserved in firing rate models. These noise-induced effects of bump attractors lead to a number of computational advantages including enhanced working memory capacity and efficient spatiotemporal multiplexing and can account for a range of cognitive and behavioral phenomena related to working memory. This study offers a dynamical approach to investigating realistic correlated neural fluctuations and insights to their roles in cortical computations.
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Affiliation(s)
- Hengyuan Ma
- Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai 200433, China
| | - Yang Qi
- Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai 200433, China
- Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, Fudan University, Ministry of Education, Shanghai 200433, China
| | - Pulin Gong
- School of Physics, University of Sydney, Sydney, NSW 2006, Australia
| | - Jie Zhang
- Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai 200433, China
- Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, Fudan University, Ministry of Education, Shanghai 200433, China
| | - Wen-Lian Lu
- Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai 200433, China
- Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, Fudan University, Ministry of Education, Shanghai 200433, China
| | - Jianfeng Feng
- Institute of Science and Technology for Brain-inspired Intelligence, Fudan University, Shanghai 200433, China
- Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, Fudan University, Ministry of Education, Shanghai 200433, China
- Department of Computer Science, University of Warwick, Coventry, CV4 7AL, U.K.
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Hua N, He X, Feng J, Lu W. Analytic Investigation for Synchronous Firing Patterns Propagation in Spiking Neural Networks. Neural Process Lett 2022. [DOI: 10.1007/s11063-022-10792-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Kang J, Xu B, Yao Y, Lin W, Hennessy C, Fraser P, Feng J. A dynamical model reveals gene co-localizations in nucleus. PLoS Comput Biol 2011; 7:e1002094. [PMID: 21760760 PMCID: PMC3131386 DOI: 10.1371/journal.pcbi.1002094] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2010] [Accepted: 05/03/2011] [Indexed: 01/08/2023] Open
Abstract
Co-localization of networks of genes in the nucleus is thought to play an important role in determining gene expression patterns. Based upon experimental data, we built a dynamical model to test whether pure diffusion could account for the observed co-localization of genes within a defined subnuclear region. A simple standard Brownian motion model in two and three dimensions shows that preferential co-localization is possible for co-regulated genes without any direct interaction, and suggests the occurrence may be due to a limitation in the number of available transcription factors. Experimental data of chromatin movements demonstrates that fractional rather than standard Brownian motion is more appropriate to model gene mobilizations, and we tested our dynamical model against recent static experimental data, using a sub-diffusion process by which the genes tend to colocalize more easily. Moreover, in order to compare our model with recently obtained experimental data, we studied the association level between genes and factors, and presented data supporting the validation of this dynamic model. As further applications of our model, we applied it to test against more biological observations. We found that increasing transcription factor number, rather than factory number and nucleus size, might be the reason for decreasing gene co-localization. In the scenario of frequency- or amplitude-modulation of transcription factors, our model predicted that frequency-modulation may increase the co-localization between its targeted genes.
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Affiliation(s)
- Jing Kang
- Nuclear Dynamics Laboratory, The Babraham Institute, Cambridge, United Kingdom
- Centre for Scientific Computing, Warwick University, Coventry, United Kingdom
| | - Bing Xu
- Centre for Computational Systems Biology, Fudan University, Shanghai, People's Republic of China
| | - Ye Yao
- Centre for Computational Systems Biology, Fudan University, Shanghai, People's Republic of China
| | - Wei Lin
- Centre for Computational Systems Biology, Fudan University, Shanghai, People's Republic of China
| | - Conor Hennessy
- Nuclear Dynamics Laboratory, The Babraham Institute, Cambridge, United Kingdom
| | - Peter Fraser
- Nuclear Dynamics Laboratory, The Babraham Institute, Cambridge, United Kingdom
- * E-mail: (PF); (JF)
| | - Jianfeng Feng
- Centre for Scientific Computing, Warwick University, Coventry, United Kingdom
- Centre for Computational Systems Biology, Fudan University, Shanghai, People's Republic of China
- * E-mail: (PF); (JF)
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