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Bezsudnova Y, Quinn AJ, Jensen O. Optimizing magnetometers arrays and analysis pipelines for multivariate pattern analysis. J Neurosci Methods 2024; 412:110279. [PMID: 39265820 DOI: 10.1016/j.jneumeth.2024.110279] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2023] [Revised: 08/12/2024] [Accepted: 09/09/2024] [Indexed: 09/14/2024]
Abstract
BACKGROUND Multivariate pattern analysis (MVPA) has proven an excellent tool in cognitive neuroscience. It also holds a strong promise when applied to optically-pumped magnetometer-based magnetoencephalography. NEW METHOD To optimize OPM-MEG systems for MVPA experiments this study examines data from a conventional MEG magnetometer array, focusing on appropriate noise reduction techniques for magnetometers. We determined the least required number of sensors needed for robust MVPA for image categorization experiments. RESULTS We found that the use of signal space separation (SSS) without a proper regularization significantly lowered the classification accuracy considering a sub-array of 102 magnetometers or a sub-array of 204 gradiometers. We also found that classification accuracy did not improve when going beyond 30 sensors irrespective of whether SSS has been applied. COMPARISON WITH EXISTING METHODS The power spectra of data filtered with SSS has a substantially higher noise floor that data cleaned with SSP or HFC. Consequently, MVPA decoding results obtained from the SSS-filtered data are significantly lower compared to all other methods employed. CONCLUSIONS When designing MEG system based on SQUID magnetometers optimized for multivariate analysis for image categorization experiments, about 30 magnetometers are sufficient. We advise against applying SSS filters without a proper regularization to data from MEG and OPM systems prior to performing MVPA as this method, albeit reducing low-frequency external noise contributions, also introduces an increase in broadband noise. We recommend employing noise reduction techniques that either decrease or maintain the noise floor of the data like signal-space projection, homogeneous field correction and gradient noise reduction.
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Affiliation(s)
- Yulia Bezsudnova
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Birmingham, UK.
| | - Andrew J Quinn
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Birmingham, UK
| | - Ole Jensen
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Birmingham, UK
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Cook H, Bezsudnova Y, Koponen LM, Jensen O, Barontini G, Kowalczyk AU. An optically pumped magnetic gradiometer for the detection of human biomagnetism. QUANTUM SCIENCE AND TECHNOLOGY 2024; 9:035016. [PMID: 38680502 PMCID: PMC11047143 DOI: 10.1088/2058-9565/ad3d81] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Revised: 03/21/2024] [Accepted: 04/11/2024] [Indexed: 05/01/2024]
Abstract
We realise an intrinsic optically pumped magnetic gradiometer based on non-linear magneto-optical rotation. We show that our sensor can reach a gradiometric sensitivity of 18 fT cm - 1 Hz - 1 and can reject common mode homogeneous magnetic field noise with up to 30 dB attenuation. We demonstrate that our magnetic field gradiometer is sufficiently sensitive and resilient to be employed in biomagnetic applications. In particular, we are able to record the auditory evoked response of the human brain, and to perform real-time magnetocardiography in the presence of external magnetic field disturbances. Our gradiometer provides complementary capabilities in human biomagnetic sensing to optically pumped magnetometers, and opens new avenues in the detection of human biomagnetism.
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Affiliation(s)
- Harry Cook
- School of Physics and Astronomy, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Yulia Bezsudnova
- School of Physics and Astronomy, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
| | - Lari M Koponen
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Edgbaston, Birmingham B15 2SA, United Kingdom
| | - Ole Jensen
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Edgbaston, Birmingham B15 2SA, United Kingdom
| | - Giovanni Barontini
- School of Physics and Astronomy, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Edgbaston, Birmingham B15 2SA, United Kingdom
| | - Anna U Kowalczyk
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Edgbaston, Birmingham B15 2SA, United Kingdom
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Bezsudnova Y, Koponen LM, Barontini G, Jensen O, Kowalczyk AU. Optimising the sensing volume of OPM sensors for MEG source reconstruction. Neuroimage 2022; 264:119747. [PMID: 36403733 PMCID: PMC7615061 DOI: 10.1016/j.neuroimage.2022.119747] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Revised: 10/17/2022] [Accepted: 11/08/2022] [Indexed: 11/19/2022] Open
Abstract
Magnetoencephalography (MEG) based on optically pumped magnetometers (OPMs) has been hailed as the future of electrophysiological recordings from the human brain. In this work, we investigate how the dimensions of the sensing volume (the vapour cell) affect the performance of both a single OPM-MEG sensor and a multi-sensor OPM-MEG system. We consider a realistic noise model that accounts for background brain activity and residual noise. By using source reconstruction metrics such as localization accuracy and time-course reconstruction accuracy, we demonstrate that the best overall sensitivity and reconstruction accuracy are achieved with cells that are significantly longer and wider that those of the majority of current commercial OPM sensors. Our work provides useful tools to optimise the cell dimensions of OPM sensors in a wide range of environments.
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Affiliation(s)
- Yulia Bezsudnova
- School of Physics and Astronomy, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United Kingdom
| | - Lari M Koponen
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Edgbaston, Birmingham, B15 2SA, United Kingdom
| | - Giovanni Barontini
- School of Physics and Astronomy, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United Kingdom; Centre for Human Brain Health, School of Psychology, University of Birmingham, Edgbaston, Birmingham, B15 2SA, United Kingdom
| | - Ole Jensen
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Edgbaston, Birmingham, B15 2SA, United Kingdom
| | - Anna U Kowalczyk
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Edgbaston, Birmingham, B15 2SA, United Kingdom.
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Detection of the 40 Hz auditory steady-state response with optically pumped magnetometers. Sci Rep 2022; 12:17993. [PMID: 36289267 PMCID: PMC9606299 DOI: 10.1038/s41598-022-21870-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Accepted: 10/04/2022] [Indexed: 01/24/2023] Open
Abstract
Magnetoencephalography (MEG) is a functional neuroimaging technique that noninvasively detects the brain magnetic field from neuronal activations. Conventional MEG measures brain signals using superconducting quantum interference devices (SQUIDs). SQUID-MEG requires a cryogenic environment involving a bulky non-magnetic Dewar flask and the consumption of liquid helium, which restricts the variability of the sensor array and the gap between the cortical sources and sensors. Recently, miniature optically pumped magnetometers (OPMs) have been developed and commercialized. OPMs do not require cryogenic cooling and can be placed within millimeters from the scalp. In the present study, we arranged six OPM sensors on the temporal area to detect auditory-related brain responses in a two-layer magnetically shielded room. We presented the auditory stimuli of 1 kHz pure-tone bursts with 200 ms duration and obtained the M50 and M100 components of auditory-evoked fields. We delivered the periodic stimuli with a 40 Hz repetition rate and observed the gamma-band power changes and inter-trial phase coherence of auditory steady-state responses at 40 Hz. We found that the OPM sensors have a performance comparable to that of conventional SQUID-MEG sensors, and our results suggest the feasibility of using OPM sensors for functional neuroimaging and brain-computer interface applications.
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Dutta P, Maurya SS, Patel K, Biswas K, Mangaonkar J, Sarkar S, D. Rapol U. A Decade of Advancement of Quantum Sensing and Metrology in India Using Cold Atoms and Ions. J Indian Inst Sci 2022. [DOI: 10.1007/s41745-022-00335-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2023]
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Seymour RA, Alexander N, Mellor S, O'Neill GC, Tierney TM, Barnes GR, Maguire EA. Interference suppression techniques for OPM-based MEG: Opportunities and challenges. Neuroimage 2022; 247:118834. [PMID: 34933122 PMCID: PMC8803550 DOI: 10.1016/j.neuroimage.2021.118834] [Citation(s) in RCA: 37] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Revised: 11/23/2021] [Accepted: 12/17/2021] [Indexed: 12/13/2022] Open
Abstract
One of the primary technical challenges facing magnetoencephalography (MEG) is that the magnitude of neuromagnetic fields is several orders of magnitude lower than interfering signals. Recently, a new type of sensor has been developed - the optically pumped magnetometer (OPM). These sensors can be placed directly on the scalp and move with the head during participant movement, making them wearable. This opens up a range of exciting experimental and clinical opportunities for OPM-based MEG experiments, including paediatric studies, and the incorporation of naturalistic movements into neuroimaging paradigms. However, OPMs face some unique challenges in terms of interference suppression, especially in situations involving mobile participants, and when OPMs are integrated with electrical equipment required for naturalistic paradigms, such as motion capture systems. Here we briefly review various hardware solutions for OPM interference suppression. We then outline several signal processing strategies aimed at increasing the signal from neuromagnetic sources. These include regression-based strategies, temporal filtering and spatial filtering approaches. The focus is on the practical application of these signal processing algorithms to OPM data. In a similar vein, we include two worked-through experiments using OPM data collected from a whole-head sensor array. These tutorial-style examples illustrate how the steps for suppressing external interference can be implemented, including the associated data and code so that researchers can try the pipelines for themselves. With the popularity of OPM-based MEG rising, there will be an increasing need to deal with interference suppression. We hope this practical paper provides a resource for OPM-based MEG researchers to build upon.
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Affiliation(s)
- Robert A Seymour
- Wellcome Centre for Human Neuroimaging, UCL Queen Square Institute of Neurology, University College London, London WC1N 3AR, UK.
| | - Nicholas Alexander
- Wellcome Centre for Human Neuroimaging, UCL Queen Square Institute of Neurology, University College London, London WC1N 3AR, UK
| | - Stephanie Mellor
- Wellcome Centre for Human Neuroimaging, UCL Queen Square Institute of Neurology, University College London, London WC1N 3AR, UK
| | - George C O'Neill
- Wellcome Centre for Human Neuroimaging, UCL Queen Square Institute of Neurology, University College London, London WC1N 3AR, UK
| | - Tim M Tierney
- Wellcome Centre for Human Neuroimaging, UCL Queen Square Institute of Neurology, University College London, London WC1N 3AR, UK
| | - Gareth R Barnes
- Wellcome Centre for Human Neuroimaging, UCL Queen Square Institute of Neurology, University College London, London WC1N 3AR, UK
| | - Eleanor A Maguire
- Wellcome Centre for Human Neuroimaging, UCL Queen Square Institute of Neurology, University College London, London WC1N 3AR, UK.
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Seymour RA, Alexander N, Mellor S, O'Neill GC, Tierney TM, Barnes GR, Maguire EA. Using OPMs to measure neural activity in standing, mobile participants. Neuroimage 2021; 244:118604. [PMID: 34555493 PMCID: PMC8591613 DOI: 10.1016/j.neuroimage.2021.118604] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Revised: 08/13/2021] [Accepted: 09/19/2021] [Indexed: 11/30/2022] Open
Abstract
Optically pumped magnetometer-based magnetoencephalography (OP-MEG) can be used to measure neuromagnetic fields while participants move in a magnetically shielded room. Head movements in previous OP-MEG studies have been up to 20 cm translation and ∼30° rotation in a sitting position. While this represents a step-change over stationary MEG systems, naturalistic head movement is likely to exceed these limits, particularly when participants are standing up. In this proof-of-concept study, we sought to push the movement limits of OP-MEG even further. Using a 90 channel (45-sensor) whole-head OP-MEG system and concurrent motion capture, we recorded auditory evoked fields while participants were: (i) sitting still, (ii) standing up and still, and (iii) standing up and making large natural head movements continuously throughout the recording - maximum translation 120 cm, maximum rotation 198°. Following pre-processing, movement artefacts were substantially reduced but not eliminated. However, upon utilisation of a beamformer, the M100 event-related field localised to primary auditory regions. Furthermore, the event-related fields from auditory cortex were remarkably consistent across the three conditions. These results suggest that a wide range of movement is possible with current OP-MEG systems. This in turn underscores the exciting potential of OP-MEG for recording neural activity during naturalistic paradigms that involve movement (e.g. navigation), and for scanning populations who are difficult to study with stationary MEG (e.g. young children).
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Affiliation(s)
- Robert A Seymour
- Wellcome Centre for Human Neuroimaging, UCL Queen Square Institute of Neurology, University College London, London WC1N 3AR, United Kingdom.
| | - Nicholas Alexander
- Wellcome Centre for Human Neuroimaging, UCL Queen Square Institute of Neurology, University College London, London WC1N 3AR, United Kingdom
| | - Stephanie Mellor
- Wellcome Centre for Human Neuroimaging, UCL Queen Square Institute of Neurology, University College London, London WC1N 3AR, United Kingdom
| | - George C O'Neill
- Wellcome Centre for Human Neuroimaging, UCL Queen Square Institute of Neurology, University College London, London WC1N 3AR, United Kingdom
| | - Tim M Tierney
- Wellcome Centre for Human Neuroimaging, UCL Queen Square Institute of Neurology, University College London, London WC1N 3AR, United Kingdom
| | - Gareth R Barnes
- Wellcome Centre for Human Neuroimaging, UCL Queen Square Institute of Neurology, University College London, London WC1N 3AR, United Kingdom
| | - Eleanor A Maguire
- Wellcome Centre for Human Neuroimaging, UCL Queen Square Institute of Neurology, University College London, London WC1N 3AR, United Kingdom.
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