1
|
Transcriptomic Changes in Mouse Bone Marrow-Derived Macrophages Exposed to Neuropeptide FF. Genes (Basel) 2021; 12:genes12050705. [PMID: 34065092 PMCID: PMC8151073 DOI: 10.3390/genes12050705] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2021] [Revised: 04/28/2021] [Accepted: 05/04/2021] [Indexed: 12/27/2022] Open
Abstract
Neuropeptide FF (NPFF) is a neuropeptide that regulates various biological activities. Currently, the regulation of NPFF on the immune system is an emerging field. However, the influence of NPFF on the transcriptome of primary macrophages has not been fully elucidated. In this study, the effect of NPFF on the transcriptome of mouse bone marrow-derived macrophages (BMDMs) was explored by RNA sequencing, bioinformatics, and molecular simulation. BMDMs were treated with 1 nM NPFF for 18 h, followed by RNA sequencing. Differentially expressed genes (DEGs) were obtained, followed by GO, KEGG, and PPI analysis. A total of eight qPCR-validated DEGs were selected as hub genes. Subsequently, the three-dimensional (3-D) structures of the eight hub proteins were constructed by Modeller and Rosetta. Next, the molecular dynamics (MD)-optimized 3-D structure of hub protein was acquired with Gromacs. Finally, the binding modes between NPFF and hub proteins were studied by Rosetta. A total of 2655 DEGs were obtained (up-regulated 1442 vs. down-regulated 1213), and enrichment analysis showed that NPFF extensively regulates multiple functional pathways mediated by BMDMs. Moreover, the 3-D structure of the hub protein was obtained after MD-optimization. Finally, the docking modes of NPFF-hub proteins were predicted. Besides, NPFFR2 was expressed on the cell membrane of BMDMs, and NPFF 1 nM significantly activated NPFFR2 protein expression. In summary, instead of significantly inhibiting the expression of the immune-related gene transcriptome of RAW 264.7 cells, NPFF simultaneously up-regulated and down-regulated the gene expression profile of a large number of BMDMs, hinting that NPFF may profoundly affect a variety of cellular processes dominated by BMDMs. Our work provides transcriptomics clues for exploring the influence of NPFF on the physiological functions of BMDMs.
Collapse
|
2
|
Sun Y, Kuang Y, Zuo Z, Zhang J, Ma X, Xing X, Liu L, Miao Y, Ren T, Li H, Mei Q. Cellular processes involved in RAW 264.7 macrophages exposed to NPFF: A transcriptional study. Peptides 2021; 136:170469. [PMID: 33309723 DOI: 10.1016/j.peptides.2020.170469] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Revised: 10/25/2020] [Accepted: 11/30/2020] [Indexed: 12/19/2022]
Abstract
Neuropeptide FF (NPFF) is a neuropeptide that modulates various physiological processes. The regulatory role of NPFF in the immune and inflammatory response is currently being revealed. However, the effect of NPFF at the transcriptome level in macrophages has not been fully elucidated. Here, the impact of NPFF on gene expression at the transcriptome level of RAW 264.7 cells was investigated by RNA-seq. RAW 264.7 macrophages were treated with NPFF (1 nM) for 18 h, followed by RNA-seq examination. Differentially expressed genes (DEGs) were acquired, followed by GO, KEGG, and PPI analysis. A total of eight qPCR-verified DEGs were obtained. Next, three-dimensional models of the eight hub proteins were constructed by using homology modeling with Modeller (9v23). Finally, molecular dynamics simulation (300 ns) was performed with GROMACS 2018.2 to investigate the structural characteristics of these hub proteins. NPFF had no detectable effect on the morphology of RAW264.7 cells. A total of 211 DEGs were acquired, and an enrichment study demonstrated that the immune response-related pathway was significantly inhibited by NPFF. Moreover, the molecular dynamics optimized-protein models of the hub proteins were obtained. Collectively, NPFF inhibited the expression of immune-related genes in RAW 264.7 cells at the transcriptome level, which suggested a negative relationship between NPFF and this set of immune-related genes in RAW 264.7 macrophages. Therefore, our data may provide direct evidence of the role of NPFF in peripheral or central inflammatory diseases.
Collapse
Affiliation(s)
- Yulong Sun
- Key Laboratory for Space Biosciences & Biotechnology, Institute of Special Environmental Biophysics, School of Life Sciences, Northwestern Polytechnical University, Xi'an, Shaanxi Province, 710072, China.
| | - Yuanyuan Kuang
- Key Laboratory for Space Biosciences & Biotechnology, Institute of Special Environmental Biophysics, School of Life Sciences, Northwestern Polytechnical University, Xi'an, Shaanxi Province, 710072, China
| | - Zhuo Zuo
- Key Laboratory for Space Biosciences & Biotechnology, Institute of Special Environmental Biophysics, School of Life Sciences, Northwestern Polytechnical University, Xi'an, Shaanxi Province, 710072, China
| | - Jin Zhang
- Institute of Analytical Chemistry and Instrument for Life Science, The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi'an Jiaotong University, Xianning West Road, Xi'an, Shaanxi Province, 710049, China
| | - Xiaolong Ma
- Key Laboratory for Space Biosciences & Biotechnology, Institute of Special Environmental Biophysics, School of Life Sciences, Northwestern Polytechnical University, Xi'an, Shaanxi Province, 710072, China
| | - Xiaoyu Xing
- School of Humanities, Economics and Laws, Northwestern Polytechnical University, Xi'an, Shaanxi Province, 710072, China
| | - Lingyi Liu
- School of Physical Science and Technology, Northwestern Polytechnical University, Xi'an, Shaanxi Province, 710072, China
| | - Yuchen Miao
- School of Physical Science and Technology, Northwestern Polytechnical University, Xi'an, Shaanxi Province, 710072, China
| | - Tao Ren
- Key Laboratory for Space Biosciences & Biotechnology, Institute of Special Environmental Biophysics, School of Life Sciences, Northwestern Polytechnical University, Xi'an, Shaanxi Province, 710072, China
| | - Hui Li
- Hong-Hui Hospital, Xi'an Jiaotong University College of Medicine, South Door Slightly Friendship Road 555, Xi'an, Shaanxi Province, 710054, China
| | - Qibing Mei
- Key Laboratory for Space Biosciences & Biotechnology, Institute of Special Environmental Biophysics, School of Life Sciences, Northwestern Polytechnical University, Xi'an, Shaanxi Province, 710072, China
| |
Collapse
|
3
|
Buffel I, Meurs A, Portelli J, Raedt R, De Herdt V, Poppe L, De Meulenaere V, Wadman W, Bihel F, Schmitt M, Vonck K, Bourguignon JJ, Simonin F, Smolders I, Boon P. The effect of neuropeptide FF in the amygdala kindling model. Acta Neurol Scand 2016; 134:181-8. [PMID: 26503695 DOI: 10.1111/ane.12526] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/29/2015] [Indexed: 11/30/2022]
Abstract
OBJECTIVE Neuropeptide FF (NPFF) and its receptors (NPFF1 R and NPFF2 R) are differentially distributed throughout the central nervous system. NPFF reduces cortical excitability in rats when administered intracerebroventricularly (i.c.v.), and both NPFF and NPFF1 R antagonists attenuate pilocarpine-induced limbic seizures. In this study, our aim was to determine whether NPFF exerts anticonvulsant or anti-epileptogenic effects in the rat amygdala kindling model for temporal lobe seizures. METHODS Male Wistar rats were implanted with a recording/stimulation electrode in the right amygdala and a cannula in the left lateral ventricle. In a first group of animals, the afterdischarge threshold (ADT) was determined after a single i.c.v. infusion of saline (n = 8) or NPFF (1 nmol/h for 2 h; n = 10). Subsequently, daily infusion of saline (n = 8) or NPFF (1 nmol/h for 2 h; i.c.v.; n = 9) was performed, followed by a kindling stimulus (ADT+200 μA). Afterdischarge duration and seizure severity were evaluated after every kindling stimulus. A second group of rats (n = 7) were fully kindled, and the effect of saline or a high dose of NPFF (10 nmol/h for 2 h, i.c.v.) on ADT and the generalized seizure threshold (GST) was subsequently determined. RESULTS In naive rats, NPFF significantly increased the ADT compared to control (435 ± 72 μA vs 131 ± 23 μA [P < 0.05]). When rats underwent daily stimulations above the ADT, NPFF did not delay or prevent kindling acquisition. Furthermore, a high dose of NPFF did not alter ADT or GST in fully kindled rats. CONCLUSIONS I.c.v. administration of NPFF reduced excitability in the amygdala in naive, but not in fully kindled rats, and had no effect on kindling acquisition.
Collapse
Affiliation(s)
- I. Buffel
- Laboratory for Clinical and Experimental Neurophysiology; Neurobiology and Neuropsychology; Department of Neurology; Ghent University; Ghent University Hospital; Ghent Belgium
| | - A. Meurs
- Laboratory for Clinical and Experimental Neurophysiology; Neurobiology and Neuropsychology; Department of Neurology; Ghent University; Ghent University Hospital; Ghent Belgium
| | - J. Portelli
- Laboratory for Clinical and Experimental Neurophysiology; Neurobiology and Neuropsychology; Department of Neurology; Ghent University; Ghent University Hospital; Ghent Belgium
- Center for Neurosciences; Department of Pharmaceutical Chemistry; Drug Analysis & Drug information; University of Brussels; Brussels Belgium
| | - R. Raedt
- Laboratory for Clinical and Experimental Neurophysiology; Neurobiology and Neuropsychology; Department of Neurology; Ghent University; Ghent University Hospital; Ghent Belgium
| | - V. De Herdt
- Laboratory for Clinical and Experimental Neurophysiology; Neurobiology and Neuropsychology; Department of Neurology; Ghent University; Ghent University Hospital; Ghent Belgium
| | - L. Poppe
- Laboratory for Clinical and Experimental Neurophysiology; Neurobiology and Neuropsychology; Department of Neurology; Ghent University; Ghent University Hospital; Ghent Belgium
| | - V. De Meulenaere
- Laboratory for Clinical and Experimental Neurophysiology; Neurobiology and Neuropsychology; Department of Neurology; Ghent University; Ghent University Hospital; Ghent Belgium
| | - W. Wadman
- Swammerdam Institute of Life Sciences; Department of Neurobiology; University of Amsterdam; Amsterdam The Netherlands
| | - F. Bihel
- Therapeuthic Innovation Laboratory; Faculty of Pharmacy; UMR 7200; CNRS; University of Strasbourg; Illkirch Graffenstaden France
| | - M. Schmitt
- Therapeuthic Innovation Laboratory; Faculty of Pharmacy; UMR 7200; CNRS; University of Strasbourg; Illkirch Graffenstaden France
| | - K. Vonck
- Laboratory for Clinical and Experimental Neurophysiology; Neurobiology and Neuropsychology; Department of Neurology; Ghent University; Ghent University Hospital; Ghent Belgium
| | - J.-J. Bourguignon
- Therapeuthic Innovation Laboratory; Faculty of Pharmacy; UMR 7200; CNRS; University of Strasbourg; Illkirch Graffenstaden France
| | - F. Simonin
- Research Institute of ESBS; CNRS; UMR7242; University of Strasbourg; Illkirch France
| | - I. Smolders
- Center for Neurosciences; Department of Pharmaceutical Chemistry; Drug Analysis & Drug information; University of Brussels; Brussels Belgium
| | - P. Boon
- Laboratory for Clinical and Experimental Neurophysiology; Neurobiology and Neuropsychology; Department of Neurology; Ghent University; Ghent University Hospital; Ghent Belgium
| |
Collapse
|
4
|
Chronic activation of NPFFR2 stimulates the stress-related depressive behaviors through HPA axis modulation. Psychoneuroendocrinology 2016; 71:73-85. [PMID: 27243477 DOI: 10.1016/j.psyneuen.2016.05.014] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/18/2016] [Revised: 05/11/2016] [Accepted: 05/13/2016] [Indexed: 01/16/2023]
Abstract
Neuropeptide FF (NPFF) is a morphine-modulating peptide that regulates the analgesic effect of opioids, and also controls food consumption and cardiovascular function through its interaction with two cognate receptors, NPFFR1 and NPFFR2. In the present study, we explore a novel modulatory role for NPFF-NPFFR2 in stress-related depressive behaviors. In a mouse model of chronic mild stress (CMS)-induced depression, the expression of NPFF significantly increased in the hypothalamus, hippocampus, medial prefrontal cortex (mPFC) and amygdala. In addition, transgenic (Tg) mice over-expressing NPFFR2 displayed clear depression and anxiety-like behaviors with hyperactivity in the hypothalamic-pituitary-adrenal (HPA) axis, reduced expression of glucocorticoid receptor (GR) and neurogenesis in the hippocampus. Furthermore, acute treatment of NPFFR2 agonists in wild-type (WT) mice enhanced the activity of the HPA axis, and chronic administration resulted in depressive and anxiety-like behaviors. Chronic stimulation of NPFFR2 also decreased the expression of hippocampal GR and led to persistent activation of the HPA axis. Strikingly, bilateral intra-paraventricular nucleus (PVN) injection of NPFFR2 shRNA predominately inhibits the depressive-like behavior in CMS-exposed mice. Antidepressants, fluoxetine and ketamine, effectively relieved the depressive behaviors of NPFFR2-Tg mice. We speculate that persistent NPFFR2 activation, in particular in the hypothalamus, up-regulates the HPA axis and results in long-lasting increases in circulating corticosterone (CORT), consequently damaging hippocampal function. This novel role of NPFFR2 in regulating the HPA axis and hippocampal function provides a new avenue for combating depression and anxiety-like disorder.
Collapse
|