1
|
Li J, Bai L, Chen Y, Cao J, Zhu J, Zhi W, Cheng Q. Detecting Collagen by Machine Learning Improved Photoacoustic Spectral Analysis for Breast Cancer Diagnostics: Feasibility Studies With Murine Models. JOURNAL OF BIOPHOTONICS 2025; 18:e202400371. [PMID: 39600191 DOI: 10.1002/jbio.202400371] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2024] [Revised: 10/05/2024] [Accepted: 11/05/2024] [Indexed: 11/29/2024]
Abstract
Collagen, a key structural component of the extracellular matrix, undergoes significant remodeling during carcinogenesis. However, the important role of collagen levels in breast cancer diagnostics still lacks effective in vivo detection techniques to provide a deeper understanding. This study presents photoacoustic spectral analysis improved by machine learning as a promising non-invasive diagnostic method, focusing on exploring collagen as a salient biomarker. Murine model experiments revealed more profound associations of collagen with other cancer components than in normal tissues. Moreover, an optimal set of feature wavelengths was identified by a genetic algorithm for enhanced diagnostic performance, among which 75% were from collagen-dominated absorption wavebands. Using optimal spectra, the diagnostic algorithm achieved 72% accuracy, 66% sensitivity, and 78% specificity, surpassing full-range spectra by 6%, 4%, and 8%, respectively. The proposed photoacoustic methods examine the feasibility of offering valuable biochemical insights into existing techniques, showing great potential for early-stage cancer detection.
Collapse
Affiliation(s)
- Jiayan Li
- Institute of Acoustics, School of Physics Science and Engineering, Tongji University, Shanghai, People's Republic of China
| | - Lu Bai
- Department of Ultrasonography, Fudan University Shanghai Cancer Center, Shanghai Medical College, Fudan University, Shanghai, People's Republic of China
| | - Yingna Chen
- Institute of Acoustics, School of Physics Science and Engineering, Tongji University, Shanghai, People's Republic of China
| | - Junmei Cao
- Institute of Acoustics, School of Physics Science and Engineering, Tongji University, Shanghai, People's Republic of China
| | - Jingtao Zhu
- School of Physics Science and Engineering, Tongji University, Shanghai, People's Republic of China
| | - Wenxiang Zhi
- Department of Ultrasonography, Fudan University Shanghai Cancer Center, Shanghai Medical College, Fudan University, Shanghai, People's Republic of China
| | - Qian Cheng
- Institute of Acoustics, School of Physics Science and Engineering, Tongji University, Shanghai, People's Republic of China
- National Key Laboratory of Autonomous Intelligent Unmanned Systems, Shanghai, People's Republic of China
- Frontiers Science Center for Intelligent Autonomous Systems, Ministry of Education, Shanghai, People's Republic of China
| |
Collapse
|
2
|
Nie S, Yin G, Li P, Guo J. Optimization on artifacts in photoacoustic images based on spectrum analyses and signal extraction. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2024; 156:503-510. [PMID: 39013038 DOI: 10.1121/10.0027934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2024] [Accepted: 06/28/2024] [Indexed: 07/18/2024]
Abstract
Photoacoustic (PA) imaging is a promising technology for functional imaging of biological tissues, offering optical contrast and acoustic penetration depth. However, the presence of signal aliasing from multiple PA sources within the same imaging object can introduce artifacts and significantly impact the quality of the PA tomographic images. In this study, an optimized method is proposed to suppress these artifacts and enhance image quality effectively. By leveraging signal time-frequency spectrum, signals from each PA source can be extracted. Subsequently, the images are reconstructed using these extracted signals and fused together to obtain an optimized image. To verify this proposed method, PA imaging experiments were conducted on two phantoms and two in vitro samples and the distribution relative error and root mean square error of the images obtained through conventional and optimized methods were calculated. The results demonstrate that the proposed method successfully suppresses the artifacts and substantially improves the image quality.
Collapse
Affiliation(s)
- Shibo Nie
- Key Laboratory of Ultrasound of Shaanxi Province, School of Physics and Information Technology, Shaanxi Normal University, Xi'an 710119, China
| | - Guanjun Yin
- Key Laboratory of Ultrasound of Shaanxi Province, School of Physics and Information Technology, Shaanxi Normal University, Xi'an 710119, China
| | - Pan Li
- School of Physics and Electrical Engineering, Weinan Normal University, Wei'Nan 714099, China
| | - Jianzhong Guo
- Key Laboratory of Ultrasound of Shaanxi Province, School of Physics and Information Technology, Shaanxi Normal University, Xi'an 710119, China
| |
Collapse
|
3
|
Zhang M, Wen L, Zhou C, Pan J, Wu S, Wang P, Zhang H, Chen P, Chen Q, Wang X, Cheng Q. Identification of different types of tumors based on photoacoustic spectral analysis: preclinical feasibility studies on skin tumors. JOURNAL OF BIOMEDICAL OPTICS 2023; 28:065004. [PMID: 37325191 PMCID: PMC10261702 DOI: 10.1117/1.jbo.28.6.065004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Revised: 05/19/2023] [Accepted: 05/22/2023] [Indexed: 06/17/2023]
Abstract
Significance Collagen and lipid are important components of tumor microenvironments (TME) and participates in tumor development and invasion. It has been reported that collagen and lipid can be used as a hallmark to diagnosis and differentiate tumors. Aim We aim to introduce photoacoustic spectral analysis (PASA) method that can provide both the content and structure distribution of endogenous chromophores in biological tissues to characterize the tumor-related features for identifying different types of tumors. Approach Ex vivo human tissues with suspected squamous cell carcinoma (SCC), suspected basal cell carcinoma (BCC), and normal tissue were used in this study. The relative lipid and collagen contents in the TME were assessed based on the PASA parameters and compared with histology. Support vector machine (SVM), one of the simplest machine learning tools, was applied for automatic skin cancer type detection. Results The PASA results showed that the lipid and collagen levels of the tumors were significantly lower than those of the normal tissue, and there was a statistical difference between SCC and BCC (p < 0.05 ), consistent with the histopathological results. The SVM-based categorization achieved diagnostic accuracies of 91.7% (normal), 93.3% (SCC), and 91.7% (BCC). Conclusions We verified the potential use of collagen and lipid in the TME as biomarkers of tumor diversity and achieved accurate tumor classification based on the collagen and lipid content using PASA. The proposed method provides a new way to diagnose tumors.
Collapse
Affiliation(s)
- Mengjiao Zhang
- Tongji University, Institute of Acoustics, School of Physics Science and Engineering, Shanghai, China
| | - Long Wen
- Tongji University, Institute of Photomedicine, Shanghai Skin Disease Hospital, School of Medicine, Shanghai, China
| | - Chu Zhou
- Tongji University, Institute of Photomedicine, Shanghai Skin Disease Hospital, School of Medicine, Shanghai, China
| | - Jing Pan
- Tongji University, Institute of Acoustics, School of Physics Science and Engineering, Shanghai, China
| | - Shiying Wu
- Tongji University, Institute of Acoustics, School of Physics Science and Engineering, Shanghai, China
| | - Peiru Wang
- Tongji University, Institute of Photomedicine, Shanghai Skin Disease Hospital, School of Medicine, Shanghai, China
| | - Haonan Zhang
- Tongji University, Institute of Acoustics, School of Physics Science and Engineering, Shanghai, China
- Tongji University, Institute of Photomedicine, Shanghai Skin Disease Hospital, School of Medicine, Shanghai, China
| | - Panpan Chen
- Tongji University, Institute of Acoustics, School of Physics Science and Engineering, Shanghai, China
| | - Qi Chen
- Tongji University, Institute of Photomedicine, Shanghai Skin Disease Hospital, School of Medicine, Shanghai, China
| | - Xiuli Wang
- Tongji University, Institute of Photomedicine, Shanghai Skin Disease Hospital, School of Medicine, Shanghai, China
| | - Qian Cheng
- Tongji University, Institute of Acoustics, School of Physics Science and Engineering, Shanghai, China
- National Key Laboratory of Autonomous Intelligent Unmanned Systems, Shanghai, China
- Frontiers Science Center for Intelligent Autonomous Systems, Ministry of Education, China
| |
Collapse
|
4
|
Li J, Chen Y, Ye W, Zhang M, Zhu J, Zhi W, Cheng Q. Molecular breast cancer subtype identification using photoacoustic spectral analysis and machine learning at the biomacromolecular level. PHOTOACOUSTICS 2023; 30:100483. [PMID: 37063308 PMCID: PMC10090435 DOI: 10.1016/j.pacs.2023.100483] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2022] [Revised: 03/20/2023] [Accepted: 03/28/2023] [Indexed: 06/19/2023]
Abstract
Breast cancer threatens the health of women worldwide, and its molecular subtypes largely determine the therapy and prognosis of patients. However, an uncomplicated and accurate method to identify subtypes is currently lacking. This study utilized photoacoustic spectral analysis (PASA) based on the partial least squares discriminant algorithm (PLS-DA) to identify molecular breast cancer subtypes at the biomacromolecular level in vivo. The area of power spectrum density (APSD) was extracted to semi-quantify the biomacromolecule content. The feature wavelengths were obtained via the variable importance in projection (VIP) score and the selectivity ratio (Sratio), to identify the biomarkers. The PASA achieved an accuracy of 84%. Most of the feature wavelengths fell into the collagen-dominated absorption waveband, which was consistent with the histopathological results. This paper proposes a successful method for identifying molecular breast cancer subtypes and proves that collagen can be treated as a biomarker for molecular breast cancer subtyping.
Collapse
Affiliation(s)
- Jiayan Li
- Institute of Acoustics, School of Physics Science and Engineering, Tongji University, Shanghai, China
| | - Yingna Chen
- Institute of Acoustics, School of Physics Science and Engineering, Tongji University, Shanghai, China
| | - Wanli Ye
- Institute of Acoustics, School of Physics Science and Engineering, Tongji University, Shanghai, China
| | - Mengjiao Zhang
- Institute of Acoustics, School of Physics Science and Engineering, Tongji University, Shanghai, China
| | - Jingtao Zhu
- School of Physics Science and Engineering, Tongji University, Shanghai, China
| | - Wenxiang Zhi
- Department of Ultrasonography, Fudan University Shanghai Cancer Center, Shanghai Medical College, Fudan University, Shanghai, China
| | - Qian Cheng
- Institute of Acoustics, School of Physics Science and Engineering, Tongji University, Shanghai, China
- Frontiers Science Center for Intelligent Autonomous Systems, Tongji University, Shanghai, China
| |
Collapse
|
5
|
Wu Z, Wang S, Shao J, Wang K, Zhang Z, Tao M, Ye J. Study of Raman scattering enhancement method based on optical multiplexing for on-line detection of gas components in strong-impact environments. OPTICS EXPRESS 2023; 31:9112-9122. [PMID: 36860010 DOI: 10.1364/oe.485144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2023] [Accepted: 02/15/2023] [Indexed: 06/18/2023]
Abstract
On-line gas detection under strong impact such as combustion and explosion is of great significance for understanding the reaction processes. To realize simultaneous on-line detection of various gases under strong impact, an approach based on optical multiplexing for enhancing spontaneous Raman scattering is proposed. A single beam is transmitted several times using optical fibers through a specific measurement point in the reaction zone. Thus, the excitation light intensity at the measurement point is enhanced and the Raman signal intensity is substantially increased. Indeed, the signal intensity can be increased by a factor of ∼10, and the constituent gases in air can be detected with sub-second time resolution, under a 100 g impact.
Collapse
|
6
|
Choi W, Park B, Choi S, Oh D, Kim J, Kim C. Recent Advances in Contrast-Enhanced Photoacoustic Imaging: Overcoming the Physical and Practical Challenges. Chem Rev 2023. [PMID: 36642892 DOI: 10.1021/acs.chemrev.2c00627] [Citation(s) in RCA: 51] [Impact Index Per Article: 25.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
For decades now, photoacoustic imaging (PAI) has been investigated to realize its potential as a niche biomedical imaging modality. Despite its highly desirable optical contrast and ultrasonic spatiotemporal resolution, PAI is challenged by such physical limitations as a low signal-to-noise ratio (SNR), diminished image contrast due to strong optical attenuation, and a lower-bound on spatial resolution in deep tissue. In addition, contrast-enhanced PAI has faced practical limitations such as insufficient cell-specific targeting due to low delivery efficiency and difficulties in developing clinically translatable agents. Identifying these limitations is essential to the continuing expansion of the field, and substantial advances in developing contrast-enhancing agents, complemented by high-performance image acquisition systems, have synergistically dealt with the challenges of conventional PAI. This review covers the past four years of research on pushing the physical and practical challenges of PAI in terms of SNR/contrast, spatial resolution, targeted delivery, and clinical application. Promising strategies for dealing with each challenge are reviewed in detail, and future research directions for next generation contrast-enhanced PAI are discussed.
Collapse
Affiliation(s)
- Wonseok Choi
- Department of Electrical Engineering, Convergence IT Engineering, Mechanical Engineering, and Medical Science and Engineering, Graduate School of Artificial Intelligence, and Medical Device Innovation Center, Pohang University of Science and Technology, 77 Cheongam-Ro, Nam-Gu, Pohang37673, Republic of Korea
| | - Byullee Park
- Department of Electrical Engineering, Convergence IT Engineering, Mechanical Engineering, and Medical Science and Engineering, Graduate School of Artificial Intelligence, and Medical Device Innovation Center, Pohang University of Science and Technology, 77 Cheongam-Ro, Nam-Gu, Pohang37673, Republic of Korea
| | - Seongwook Choi
- Department of Electrical Engineering, Convergence IT Engineering, Mechanical Engineering, and Medical Science and Engineering, Graduate School of Artificial Intelligence, and Medical Device Innovation Center, Pohang University of Science and Technology, 77 Cheongam-Ro, Nam-Gu, Pohang37673, Republic of Korea
| | - Donghyeon Oh
- Department of Electrical Engineering, Convergence IT Engineering, Mechanical Engineering, and Medical Science and Engineering, Graduate School of Artificial Intelligence, and Medical Device Innovation Center, Pohang University of Science and Technology, 77 Cheongam-Ro, Nam-Gu, Pohang37673, Republic of Korea
| | - Jongbeom Kim
- Department of Electrical Engineering, Convergence IT Engineering, Mechanical Engineering, and Medical Science and Engineering, Graduate School of Artificial Intelligence, and Medical Device Innovation Center, Pohang University of Science and Technology, 77 Cheongam-Ro, Nam-Gu, Pohang37673, Republic of Korea
| | - Chulhong Kim
- Department of Electrical Engineering, Convergence IT Engineering, Mechanical Engineering, and Medical Science and Engineering, Graduate School of Artificial Intelligence, and Medical Device Innovation Center, Pohang University of Science and Technology, 77 Cheongam-Ro, Nam-Gu, Pohang37673, Republic of Korea
| |
Collapse
|
7
|
Mao Q, Zhao W, Qian X, Tao C, Liu X. Improving photoacoustic imaging in low signal-to-noise ratio by using spatial and polarity coherence. PHOTOACOUSTICS 2022; 28:100427. [PMID: 36466730 PMCID: PMC9709228 DOI: 10.1016/j.pacs.2022.100427] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/31/2022] [Revised: 11/18/2022] [Accepted: 11/22/2022] [Indexed: 06/17/2023]
Abstract
To suppress the noise and sidelobe of photoacoustic images, a method is proposed combined with spatial coherence and polarity coherence. In this method, PA signals are delayed, multiplied, then performed polarity coherence, and finally summed. The polarity of delayed-and-multiplied signals rather than the amplitude is considered in polarity coherence operation. The polarity coherence factor is calculated based on the standard deviation of the polarity. Then, the factor as weights is applied to the coherent sum output after spatial autocorrelation to finally obtain the image. The simulated and experimental results prove that the noise level can be effectively suppressed due to its relatively low polarity coherence factor. Compared with the delay-and-sum method, the quantitative results in simulations show that the image contrast and full-width at half-maximum of the proposed method increase by about 227.0 % and 56.5 % when the signal-to-noise ratio of the raw signal is 0 dB, respectively. Besides achieving a better image contrast, this method obtains improvements in sidelobe attenuation and has a narrow main lobe.
Collapse
Affiliation(s)
- Qiuqin Mao
- Ministry-of-Education Key Laboratory of Modern Acoustics, Department of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210093, China
| | - Weiwei Zhao
- Ministry-of-Education Key Laboratory of Modern Acoustics, Department of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210093, China
| | - Xiaoqin Qian
- Department of Ultrasound, Affiliated People’s Hospital of Jiangsu University, Zhenjiang 212000, China
| | - Chao Tao
- Ministry-of-Education Key Laboratory of Modern Acoustics, Department of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210093, China
| | - Xiaojun Liu
- Ministry-of-Education Key Laboratory of Modern Acoustics, Department of Physics, Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing 210093, China
| |
Collapse
|
8
|
Biswas D, Roy S, Vasudevan S. Biomedical Application of Photoacoustics: A Plethora of Opportunities. MICROMACHINES 2022; 13:1900. [PMID: 36363921 PMCID: PMC9692656 DOI: 10.3390/mi13111900] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Revised: 10/19/2022] [Accepted: 10/29/2022] [Indexed: 06/16/2023]
Abstract
The photoacoustic (PA) technique is a non-invasive, non-ionizing hybrid technique that exploits laser irradiation for sample excitation and acquires an ultrasound signal generated due to thermoelastic expansion of the sample. Being a hybrid technique, PA possesses the inherent advantages of conventional optical (high resolution) and ultrasonic (high depth of penetration in biological tissue) techniques and eliminates some of the major limitations of these conventional techniques. Hence, PA has been employed for different biomedical applications. In this review, we first discuss the basic physics of PA. Then, we discuss different aspects of PA techniques, which includes PA imaging and also PA frequency spectral analysis. The theory of PA signal generation, detection and analysis is also detailed in this work. Later, we also discuss the major biomedical application area of PA technique.
Collapse
Affiliation(s)
- Deblina Biswas
- School of Bioengineering and Food Technology, Shoolini University, Solan 173229, HP, India
| | - Swarup Roy
- School of Bioengineering and Food Technology, Shoolini University, Solan 173229, HP, India
| | - Srivathsan Vasudevan
- Discipline of Electrical Engineering, Indian Institute of Technology Indore, Khandwa Road, Simrol 453552, MP, India
| |
Collapse
|