Molecular characterization and phylogenetic analyses of Fasciola gigantica of buffaloes and goats in Punjab, Pakistan

Molecular Characterization and Phylogenetic Analysis of Fasciola gigantica Based on ITS-1 Genetic Marker and copro-epidemiological Survey from Ruminants of Pakistan

PURPOSE

Fascioliasis is a zoonotic parasitic disease spread by genus Fasciola that causes considerable health and economic losses to both humans and livestock. Pakistan is an endemic region for fascioliasis and only a few molecular studies have been conducted to describe the etiology of disease in the country.

METHODS

Current study involved the molecular characterization of adult fluke specimens (n = 31) through ITS-1 region of rDNA collected from four host species (sheep, goats, cattle and buffaloes) of district Sargodha. Moreover, coprology based epidemiology (n = 28620) and association of different risk factors with disease prevalence was also determined. Additionally, an overview of prevalence of fascioliasis in Pakistan, including molecular studies in the four provinces and livestock species, was also carried out.

RESULTS

The phylogenetic analysis revealed that Fasciola gigantica was the main etiological agent infecting the livestock species of this region. The coprological survey revealed an overall prevalence of 30.18% among the livestock species (sheep = 32.31%, goats = 30.67%, cattle = 31.01%, buffaloes = 25.23%). It was inferred that females were slightly more susceptible to infection (32.59%) and that the older age group had higher infection rate (34.01%) in all the host species.

CONCLUSION

The current study suggests that fascioliasis is a disease of primary concern indicating its status as one of the prevalent diseases affecting livestock in this region. It was also concluded that both Fasciola gigantica and Fasciola hepatica existed among the infected animals in addition to presence of hybrid/intermediate form in Pakistan with F. gigantica as dominant species in Punjab province.

Intra- and interspecies variation and population dynamics of Fasciola gigantica among ruminants in Sudan

Fasciola gigantica is a widespread parasite that causes neglected disease in livestock worldwide. Its high transmissibility and dispersion are attributed to its ability to infect intermediate snail hosts and adapt to various mammalian definitive hosts. This study investigated the variation and population dynamics of F. gigantica in cattle, sheep, and goats from three states in Sudan. Mitochondrial cytochrome c oxidase subunit I (COI) and NADH dehydrogenase subunit 1 (ND1) genes were sequenced successfully to examine intra and interspecific differences. ND1 exhibited higher diversity than COI, with 15 haplotypes and 10 haplotypes, respectively. Both genes had high haplotype diversity but low nucleotide diversity, with 21 and 11 polymorphic sites for ND1 and COI, respectively. Mismatch distribution analysis and neutrality tests revealed that F. gigantica from different host species was in a state of population expansion. Maximum likelihood phylogenetic trees and median networks revealed that F. gigantica in Sudan and other African countries had host-specific and country-specific lineages for both genes. The study also indicated that F. gigantica-infected small ruminants were evolutionarily distant, suggesting deep and historical interspecies adaptation.

Bubalus bubalis Blood as Biological Tool to Track Impacts from Cobalt: Bioaccumulation and Health Risks Perspectives from a Water-Soil-Forage-Livestock Ecosystem

Cobalt (Co) bioaccumulation, contamination, and toxicity in the soil environment, plant growth, and cattles' health are becoming a severe matter that can cause unembellished consequences in environmental safety and human health. The present research was conducted for the assurance of cobalt (Co) amassing in three forage plant species (Zea mays, Sorghum bicolor, Trifolium alaxandrium), from four ecological sites, and sewage water and in buffaloes blood was investigated. The analysis of variance showed significant differences for Co concentration in the soil and sewage water collected from all ecological sites. Meanwhile, summer and winter seasons and forage ecotypes significantly influenced the quantity of Co. The forage pastures also vary significantly in the concentration of Co in the above-ground parts. The highest Co level was present in Trifolium alaxandrium at ecological site-5. Cobalt taken from wastewater had a higher concentration in Trifolium alaxandrium during the winter. The samples which are collected from site-V and site-IV have the maximum concentration of Co because these areas receive highly contaminated water for irrigation. Cobalt tends to be bioaccumulated in the food chain and can cause serious problems in humans and animals. Bioaccumulation of cobalt in collected samples could be accredited to anthropogenic activities. Pollution load index values for all samples fell in the range below 1. The health risk index indicated the probability of health damage caused by the ingestion of contaminated fodder. An increase of Co concentration in soil, fodder, and blood owing to wastewater irrigation to crops was indicated as an outcome of this investigation. The results indicate that the Co toxicity in forage crops is attributed to Co bioaccumulation, transfer, and pollution load in the soil-water-cattle triangle. Efforts should be extended to avoid contamination of the food chain via Co-rich sewage water. Other nonconventional water resources should be used for forage irrigation.

Development of novel DNA marker for species discrimination of Fasciola flukes based on the fatty acid binding protein type I gene

Background

Multiplex polymerase chain reaction (PCR) and PCR-restriction fragment length polymorphism (RFLP) for nuclear phosphoenolpyruvate carboxykinase (pepck) and polymerase delta (pold), respectively, have been used to differentiate Fasciola hepatica, F. gigantica, and hybrid Fasciola flukes. However, discrimination errors have been reported in both methods. This study aimed to develop a multiplex PCR based on a novel nuclear marker, the fatty acid binding protein type I (FABP) type I gene.

Methods

Nucleotide sequence variations of FABP type I were analyzed using DNA samples of F. hepatica, F. gigantica, and hybrid Fasciola flukes obtained from 11 countries in Europe, Latin America, Africa, and Asia. A common forward primer for F. hepatica and F. gigantica and two specific reverse primers for F. hepatica and F. gigantica were designed for multiplex PCR.

Results

Specific fragments of F. hepatica (290 bp) and F. gigantica (190 bp) were successfully amplified using multiplex PCR. However, the hybrid flukes contained fragments of both species. The multiplex PCR for FABP type I could precisely discriminate the 1312 Fasciola samples used in this study. Notably, no discrimination errors were observed with this novel method.

Conclusions

Multiplex PCR for FABP type I can be used as a species discrimination marker in place of pepck and pold. The robustness of the species-specific primer should be continuously examined using a larger number of Fasciola flukes worldwide in the future since nucleotide substitutions in the primer regions may cause amplification errors.

Graphical abstract

Supplementary Information

The online version contains supplementary material available at 10.1186/s13071-022-05538-7.