1
|
|
2
|
Heo JU, Zhou F, Jones R, Zheng J, Song X, Qian P, Baydoun A, Traughber MS, Kuo JW, Helo RA, Thompson C, Avril N, DeVincent D, Hunt H, Gupta A, Faraji N, Kharouta MZ, Kardan A, Bitonte D, Langmack CB, Nelson A, Kruzer A, Yao M, Dorth J, Nakayama J, Waggoner SE, Biswas T, Harris E, Sandstrom S, Traughber BJ, Muzic RF. Abdominopelvic MR to CT registration using a synthetic CT intermediate. J Appl Clin Med Phys 2022; 23:e13731. [PMID: 35920116 PMCID: PMC9512351 DOI: 10.1002/acm2.13731] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Revised: 04/25/2022] [Accepted: 06/27/2022] [Indexed: 11/21/2022] Open
Abstract
Accurate coregistration of computed tomography (CT) and magnetic resonance (MR) imaging can provide clinically relevant and complementary information and can serve to facilitate multiple clinical tasks including surgical and radiation treatment planning, and generating a virtual Positron Emission Tomography (PET)/MR for the sites that do not have a PET/MR system available. Despite the long‐standing interest in multimodality co‐registration, a robust, routine clinical solution remains an unmet need. Part of the challenge may be the use of mutual information (MI) maximization and local phase difference (LPD) as similarity metrics, which have limited robustness, efficiency, and are difficult to optimize. Accordingly, we propose registering MR to CT by mapping the MR to a synthetic CT intermediate (sCT) and further using it in a sCT‐CT deformable image registration (DIR) that minimizes the sum of squared differences. The resultant deformation field of a sCT‐CT DIR is applied to the MRI to register it with the CT. Twenty‐five sets of abdominopelvic imaging data are used for evaluation. The proposed method is compared to standard MI‐ and LPD‐based methods, and the multimodality DIR provided by a state of the art, commercially available FDA‐cleared clinical software package. The results are compared using global similarity metrics, Modified Hausdorff Distance, and Dice Similarity Index on six structures. Further, four physicians visually assessed and scored registered images for their registration accuracy. As evident from both quantitative and qualitative evaluation, the proposed method achieved registration accuracy superior to LPD‐ and MI‐based methods and can refine the results of the commercial package DIR when using its results as a starting point. Supported by these, this manuscript concludes the proposed registration method is more robust, accurate, and efficient than the MI‐ and LPD‐based methods.
Collapse
Affiliation(s)
- Jin Uk Heo
- Department of Radiology, Case Western Reserve University, Cleveland, Ohio, USA.,Department of Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio, USA
| | - Feifei Zhou
- Department of Radiology, Case Western Reserve University, Cleveland, Ohio, USA
| | - Robert Jones
- Department of Radiology, Case Western Reserve University, Cleveland, Ohio, USA.,Department of Radiology, University Hospitals Cleveland Medical Center, Cleveland, Ohio, USA
| | - Jiamin Zheng
- School of Artificial Intelligence and Computer Science, Jiangnan University, Wuxi, Jiangsu, China
| | - Xin Song
- School of Artificial Intelligence and Computer Science, Jiangnan University, Wuxi, Jiangsu, China
| | - Pengjiang Qian
- School of Artificial Intelligence and Computer Science, Jiangnan University, Wuxi, Jiangsu, China
| | - Atallah Baydoun
- Department of Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio, USA.,Department of Internal Medicine, Louis Stokes Cleveland VA Medical Center, Cleveland, Ohio, USA
| | - Melanie S Traughber
- Department of Radiation Oncology, Penn State University, Hershey, Pennsylvania, USA
| | - Jung-Wen Kuo
- Department of Radiology, Case Western Reserve University, Cleveland, Ohio, USA
| | - Rose Al Helo
- Department of Radiology, University Hospitals Cleveland Medical Center, Cleveland, Ohio, USA
| | - Cheryl Thompson
- Department of Public Health Sciences, Penn State College of Medicine, Hershey, Pennsylvania, USA
| | - Norbert Avril
- Department of Radiology, Case Western Reserve University, Cleveland, Ohio, USA.,Department of Radiology, University Hospitals Cleveland Medical Center, Cleveland, Ohio, USA
| | - Daniel DeVincent
- Department of Radiology, University Hospitals Cleveland Medical Center, Cleveland, Ohio, USA
| | - Harold Hunt
- Department of Radiology, University Hospitals Cleveland Medical Center, Cleveland, Ohio, USA
| | - Amit Gupta
- Department of Radiology, Case Western Reserve University, Cleveland, Ohio, USA.,Department of Radiology, University Hospitals Cleveland Medical Center, Cleveland, Ohio, USA
| | - Navid Faraji
- Department of Radiology, Case Western Reserve University, Cleveland, Ohio, USA.,Department of Radiology, University Hospitals Cleveland Medical Center, Cleveland, Ohio, USA
| | - Michael Z Kharouta
- Department of Radiation Oncology, University Hospitals Cleveland Medical Center, Cleveland, Ohio, USA
| | - Arash Kardan
- Department of Radiology, Case Western Reserve University, Cleveland, Ohio, USA.,Department of Radiology, University Hospitals Cleveland Medical Center, Cleveland, Ohio, USA
| | - David Bitonte
- Department of Radiology, Case Western Reserve University, Cleveland, Ohio, USA.,Department of Radiology, University Hospitals Cleveland Medical Center, Cleveland, Ohio, USA
| | - Christian B Langmack
- Department of Radiation Oncology, University Hospitals Cleveland Medical Center, Cleveland, Ohio, USA
| | | | | | - Min Yao
- Department of Radiation Oncology, Penn State University, Hershey, Pennsylvania, USA
| | - Jennifer Dorth
- Department of Radiation Oncology, University Hospitals Cleveland Medical Center, Cleveland, Ohio, USA.,Department of Radiation Oncology, Case Western Reserve University, Cleveland, Ohio, USA
| | - John Nakayama
- Department of Obstetrics and Gynecology, Allegheny Health Network, Pittsburgh, Pennsylvania, USA
| | - Steven E Waggoner
- Department of Obstetrics and Gynecology, Cleveland Clinic, Cleveland, Ohio, USA
| | - Tithi Biswas
- Department of Radiation Oncology, University Hospitals Cleveland Medical Center, Cleveland, Ohio, USA.,Department of Radiation Oncology, Case Western Reserve University, Cleveland, Ohio, USA
| | - Eleanor Harris
- Department of Radiation Oncology, University Hospitals Cleveland Medical Center, Cleveland, Ohio, USA.,Department of Radiation Oncology, Case Western Reserve University, Cleveland, Ohio, USA
| | - Susan Sandstrom
- Department of Radiation Oncology, University Hospitals Cleveland Medical Center, Cleveland, Ohio, USA
| | - Bryan J Traughber
- Department of Radiation Oncology, Penn State University, Hershey, Pennsylvania, USA
| | - Raymond F Muzic
- Department of Radiology, Case Western Reserve University, Cleveland, Ohio, USA.,Department of Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio, USA.,Department of Radiology, University Hospitals Cleveland Medical Center, Cleveland, Ohio, USA
| |
Collapse
|
3
|
Chen J, Chen H, Guo Y, Zhou M, Huang R, Mao C. A Novel Test Case Generation Approach for Adaptive Random Testing of Object-Oriented Software Using K-Means Clustering Technique. IEEE TRANSACTIONS ON EMERGING TOPICS IN COMPUTATIONAL INTELLIGENCE 2022. [DOI: 10.1109/tetci.2021.3122511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Jinfu Chen
- School of Computer Science and Communication Engineering, Jiangsu University, Zhenjiang, China
| | - Haibo Chen
- School of Computer Science and Communication Engineering, Jiangsu University, Zhenjiang, China
| | - Yuchi Guo
- School of Computer Science and Communication Engineering, Jiangsu University, Zhenjiang, China
| | - Minmin Zhou
- School of Computer Science and Communication Engineering, Jiangsu University, Zhenjiang, China
| | - Rubing Huang
- Faculty of Information and Technology, Macau University of Science and Technology, Macau, China
| | - Chengying Mao
- School of Software and IoT Engineering, Jiangxi University of Finance and Economics, Nanchang, China
| |
Collapse
|
4
|
Zhang J, Yuan C. Analysis and Management of Flu Disease Public Opinion Based on Machine Learning. JOURNAL OF MEDICAL IMAGING AND HEALTH INFORMATICS 2021. [DOI: 10.1166/jmihi.2021.3706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
In the new media era, there are more ways of information dissemination, and the speed of information dissemination becomes faster. Along with it, various public opinions and rumors flood the cyberspace. As a mainstream social media information publishing platform, microblog has become
the main way for netizens to obtain, disseminate and publish information. Because microblog can freely make speeches, and has a fast transmission speed and a wide range, it is easy for public opinion information to be widely disseminated in a short time. In particular, information such as
rumors in public opinion can affect the network environment and social stability. Therefore, it is necessary to analyze and predict public opinion changes and to provide early warning. The literature uses the classic BP-NN (BP-NN) as the base prediction model, and uses the information published
on the Sina microblog platform as a sample to analyze and predict the public opinion of influenza diseases. Due to the BP-NN’ slow convergence speed, this paper introduces an improved genetic algorithm to select the optimal parameters in the BP-NN (IGA-BP-NN), shorten the calculation
time, and improve the analysis and prediction efficiency. The experiments verify that the work in this paper can provide more accurate early-warning information for the public opinion management of related departments.
Collapse
Affiliation(s)
- Jie Zhang
- College of Economics and Management, Nanjing University of Aeronautics and Astronautics, Nanjing 211100, Nanjing, P. R. China
| | - Chao Yuan
- College of Economics and Management, Nanjing University of Aeronautics and Astronautics, Nanjing 211100, Nanjing, P. R. China
| |
Collapse
|
5
|
Wen W. Sleep Quality Detection Based on EEG Signals Using Transfer Support Vector Machine Algorithm. Front Neurosci 2021; 15:670745. [PMID: 33967687 PMCID: PMC8104363 DOI: 10.3389/fnins.2021.670745] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Accepted: 03/15/2021] [Indexed: 11/13/2022] Open
Abstract
BACKGROUND In recent years, with the acceleration of life rhythm and increased pressure, the problem of sleep disorders has become more and more serious. It affects people's quality of life and reduces work efficiency, so the monitoring and evaluation of sleep quality is of great significance. Sleep staging has an important reference value in sleep quality assessment. This article starts with the study of sleep staging to detect and analyze sleep quality. For the purpose of sleep quality detection, this article proposes a sleep quality detection method based on electroencephalography (EEG) signals. MATERIALS AND METHODS This method first preprocesses the EEG signals and then uses the discrete wavelet transform (DWT) for feature extraction. Finally, the transfer support vector machine (TSVM) algorithm is used to classify the feature data. RESULTS The proposed algorithm was tested using 60 pieces of data from the National Sleep Research Resource Library of the United States, and sleep quality was evaluated using three indicators: sensitivity, specificity, and accuracy. Experimental results show that the classification performance of the TSVM classifier is significantly higher than those of other comparison algorithms. This further validated the effectiveness of the proposed sleep quality detection method.
Collapse
Affiliation(s)
- Wu Wen
- Chongqing Technology and Business Institute, Chongqing, China
| |
Collapse
|
6
|
Chen X, Xu L, Cao M, Zhang T, Shang Z, Zhang L. Design and Implementation of Human-Computer Interaction Systems Based on Transfer Support Vector Machine and EEG Signal for Depression Patients’ Emotion Recognition. JOURNAL OF MEDICAL IMAGING AND HEALTH INFORMATICS 2021. [DOI: 10.1166/jmihi.2021.3340] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
At present, the demand for intelligentization of human-computer interaction systems (HCIS) has become increasingly prominent. Being able to recognize the emotions of users of interactive systems is a distinguishing feature of intelligent interactive systems. The intelligent HCIS can
analyze the emotional changes of patients with depression, complete the interaction with the patients in a more appropriate manner, and the recognition results can assist family members or medical personnel to make response measures based on the patient’s emotional changes. Based on
this background, this paper proposes a sentiment recognition method based on transfer support vector machines (TSVM) and EEG signals. The ER (ER) results based on this method are applied to HCIS. Such a HCIS is mainly used for the interaction of patients with depression. When a new field related
to a certain field appears, if the new field data is relabeled, the sample is expensive, and it is very wasteful to discard all the old field data. The main innovation of this research is that the introduced classification model is TSVM. TSVM is a transfer learning strategy based on SVM. Transfer
learning aims to solve related but different target domain problems by using a large amount of labeled source domain data. Therefore, the transfer support vector machine based on the transfer mechanism can use the small labeled data of the target domain and a large amount of old data in the
related domain to build a high-quality classification model for the target domain, which can effectively improve the accuracy of classification. Comparing the classification results with other classification models, it can be concluded that TSVM can effectively improve the accuracy of ER in
patients with depression. The HCIS based on the classification model has higher accuracy and better stability.
Collapse
Affiliation(s)
- Xiang Chen
- School of Design Jiangnan University, Jiangsu Wuxi, 214122, China
| | - Lijun Xu
- Art and Design Department Nanjing Institute of Technology, 211167, China
| | - Ming Cao
- School of Design Jiangnan University, Jiangsu Wuxi, 214122, China
| | - Tinghua Zhang
- School of Design Jiangnan University, Jiangsu Wuxi, 214122, China
| | - Zhongan Shang
- School of Design Jiangnan University, Jiangsu Wuxi, 214122, China
| | - Linghao Zhang
- School of Design Jiangnan University, Jiangsu Wuxi, 214122, China
| |
Collapse
|
7
|
Yu X, Kang C, Guttery DS, Kadry S, Chen Y, Zhang YD. ResNet-SCDA-50 for Breast Abnormality Classification. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2021; 18:94-102. [PMID: 32287004 DOI: 10.1109/tcbb.2020.2986544] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
(Aim) Breast cancer is the most common cancer in women and the second most common cancer worldwide. With the rapid advancement of deep learning, the early stages of breast cancer development can be accurately detected by radiologists with the help of artificial intelligence systems. (Method) Based on mammographic imaging, a mainstream clinical breast screening technique, we present a diagnostic system for accurate classification of breast abnormalities based on ResNet-50. To improve the proposed model, we created a new data augmentation framework called SCDA (Scaling and Contrast limited adaptive histogram equalization Data Augmentation). In its procedure, we first conduct the scaling operation to the original training set, followed by applying contrast limited adaptive histogram equalisation (CLAHE) to the scaled training set. By stacking the training set after SCDA with the original training set, we formed a new training set. The network trained by the augmented training set, was coined as ResNet-SCDA-50. Our system, which aims at a binary classification on mammographic images acquired from INbreast and MINI-MIAS, classifies masses, microcalcification as "abnormal", while normal regions are classified as "normal". (Results) We present the first attempt to use the image contrast enhancement method as the data augmentation method, resulting in an averaged 98.55 percent specificity and 92.83 percent sensitivity, which gives our best model an overall accuracy of 95.74 percent. (Conclusion) Our proposed method is effective in classifying breast abnormality.
Collapse
|
8
|
Qian P, Zheng J, Zheng Q, Liu Y, Wang T, Al Helo R, Baydoun A, Avril N, Ellis RJ, Friel H, Traughber MS, Devaraj A, Traughber B, Muzic RF. Transforming UTE-mDixon MR Abdomen-Pelvis Images Into CT by Jointly Leveraging Prior Knowledge and Partial Supervision. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2021; 18:70-82. [PMID: 32175868 PMCID: PMC7932030 DOI: 10.1109/tcbb.2020.2979841] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
Computed tomography (CT) provides information for diagnosis, PET attenuation correction (AC), and radiation treatment planning (RTP). Disadvantages of CT include poor soft tissue contrast and exposure to ionizing radiation. While MRI can overcome these disadvantages, it lacks the photon absorption information needed for PET AC and RTP. Thus, an intelligent transformation from MR to CT, i.e., the MR-based synthetic CT generation, is of great interest as it would support PET/MR AC and MR-only RTP. Using an MR pulse sequence that combines ultra-short echo time (UTE) and modified Dixon (mDixon), we propose a novel method for synthetic CT generation jointly leveraging prior knowledge as well as partial supervision (SCT-PK-PS for short) on large-field-of-view images that span abdomen and pelvis. Two key machine learning techniques, i.e., the knowledge-leveraged transfer fuzzy c-means (KL-TFCM) and the Laplacian support vector machine (LapSVM), are used in SCT-PK-PS. The significance of our effort is threefold: 1) Using the prior knowledge-referenced KL-TFCM clustering, SCT-PK-PS is able to group the feature data of MR images into five initial clusters of fat, soft tissue, air, bone, and bone marrow. Via these initial partitions, clusters needing to be refined are observed and for each of them a few additionally labeled examples are given as the partial supervision for the subsequent semi-supervised classification using LapSVM; 2) Partial supervision is usually insufficient for conventional algorithms to learn the insightful classifier. Instead, exploiting not only the given supervision but also the manifold structure embedded primarily in numerous unlabeled data, LapSVM is capable of training multiple desired tissue-recognizers; 3) Benefiting from the joint use of KL-TFCM and LapSVM, and assisted by the edge detector filter based feature extraction, the proposed SCT-PK-PS method features good recognition accuracy of tissue types, which ultimately facilitates the good transformation from MR images to CT images of the abdomen-pelvis. Applying the method on twenty subjects' feature data of UTE-mDixon MR images, the average score of the mean absolute prediction deviation (MAPD) of all subjects is 140.72 ± 30.60 HU which is statistically significantly better than the 241.36 ± 21.79 HU obtained using the all-water method, the 262.77 ± 42.22 HU obtained using the four-cluster-partitioning (FCP, i.e., external-air, internal-air, fat, and soft tissue) method, and the 197.05 ± 76.53 HU obtained via the conventional SVM method. These results demonstrate the effectiveness of our method for the intelligent transformation from MR to CT on the body section of abdomen-pelvis.
Collapse
|
9
|
Jiang Y, Gu X, Wu D, Hang W, Xue J, Qiu S, Lin CT. A Novel Negative-Transfer-Resistant Fuzzy Clustering Model With a Shared Cross-Domain Transfer Latent Space and its Application to Brain CT Image Segmentation. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2021; 18:40-52. [PMID: 31905144 DOI: 10.1109/tcbb.2019.2963873] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Traditional clustering algorithms for medical image segmentation can only achieve satisfactory clustering performance under relatively ideal conditions, in which there is adequate data from the same distribution, and the data is rarely disturbed by noise or outliers. However, a sufficient amount of medical images with representative manual labels are often not available, because medical images are frequently acquired with different scanners (or different scan protocols) or polluted by various noises. Transfer learning improves learning in the target domain by leveraging knowledge from related domains. Given some target data, the performance of transfer learning is determined by the degree of relevance between the source and target domains. To achieve positive transfer and avoid negative transfer, a negative-transfer-resistant mechanism is proposed by computing the weight of transferred knowledge. Extracting a negative-transfer-resistant fuzzy clustering model with a shared cross-domain transfer latent space (called NTR-FC-SCT) is proposed by integrating negative-transfer-resistant and maximum mean discrepancy (MMD) into the framework of fuzzy c-means clustering. Experimental results show that the proposed NTR-FC-SCT model outperformed several traditional non-transfer and related transfer clustering algorithms.
Collapse
|
10
|
Song X, Qian P, Zheng J, Jiang Y, Xia K, Traughber B, Wu D, Muzic RF. mDixon-based synthetic CT generation via transfer and patch learning. Pattern Recognit Lett 2020. [DOI: 10.1016/j.patrec.2020.06.017] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
|
11
|
Qian P, Chen Y, Kuo JW, Zhang YD, Jiang Y, Zhao K, Al Helo R, Friel H, Baydoun A, Zhou F, Heo JU, Avril N, Herrmann K, Ellis R, Traughber B, Jones RS, Wang S, Su KH, Muzic RF. mDixon-Based Synthetic CT Generation for PET Attenuation Correction on Abdomen and Pelvis Jointly Using Transfer Fuzzy Clustering and Active Learning-Based Classification. IEEE TRANSACTIONS ON MEDICAL IMAGING 2020; 39:819-832. [PMID: 31425065 PMCID: PMC7284852 DOI: 10.1109/tmi.2019.2935916] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
We propose a new method for generating synthetic CT images from modified Dixon (mDixon) MR data. The synthetic CT is used for attenuation correction (AC) when reconstructing PET data on abdomen and pelvis. While MR does not intrinsically contain any information about photon attenuation, AC is needed in PET/MR systems in order to be quantitatively accurate and to meet qualification standards required for use in many multi-center trials. Existing MR-based synthetic CT generation methods either use advanced MR sequences that have long acquisition time and limited clinical availability or use matching of the MR images from a newly scanned subject to images in a library of MR-CT pairs which has difficulty in accounting for the diversity of human anatomy especially in patients that have pathologies. To address these deficiencies, we present a five-phase interlinked method that uses mDixon MR acquisition and advanced machine learning methods for synthetic CT generation. Both transfer fuzzy clustering and active learning-based classification (TFC-ALC) are used. The significance of our efforts is fourfold: 1) TFC-ALC is capable of better synthetic CT generation than methods currently in use on the challenging abdomen using only common Dixon-based scanning. 2) TFC partitions MR voxels initially into the four groups regarding fat, bone, air, and soft tissue via transfer learning; ALC can learn insightful classifiers, using as few but informative labeled examples as possible to precisely distinguish bone, air, and soft tissue. Combining them, the TFC-ALC method successfully overcomes the inherent imperfection and potential uncertainty regarding the co-registration between CT and MR images. 3) Compared with existing methods, TFC-ALC features not only preferable synthetic CT generation but also improved parameter robustness, which facilitates its clinical practicability. Applying the proposed approach on mDixon-MR data from ten subjects, the average score of the mean absolute prediction deviation (MAPD) was 89.78±8.76 which is significantly better than the 133.17±9.67 obtained using the all-water (AW) method (p=4.11E-9) and the 104.97±10.03 obtained using the four-cluster-partitioning (FCP, i.e., external-air, internal-air, fat, and soft tissue) method (p=0.002). 4) Experiments in the PET SUV errors of these approaches show that TFC-ALC achieves the highest SUV accuracy and can generally reduce the SUV errors to 5% or less. These experimental results distinctively demonstrate the effectiveness of our proposed TFCALC method for the synthetic CT generation on abdomen and pelvis using only the commonly-available Dixon pulse sequence.
Collapse
|
12
|
Dong X, Du H, Guan H, Zhang X. Multiscale Time-Sharing Elastography Algorithms and Transfer Learning of Clinicopathological Features of Uterine Cervical Cancer for Medical Intelligent Computing System. J Med Syst 2019; 43:310. [PMID: 31448390 DOI: 10.1007/s10916-019-1433-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2019] [Accepted: 08/07/2019] [Indexed: 10/26/2022]
Abstract
Intelligent medical diagnosis and computing system faces many challenges in complex object recognition, large-scale data imaging and real-time diagnosis, such as poor real-time computing, low efficiency of data storage and low recognition rate of lesions. In order to solve the above problems, this paper proposes a medical intelligent computing system and a series of algorithms for the clinical pathology of cervical cancer based on the multi-scale imaging and transfer learning framework. Firstly, based on data dimensions, imaging errors and other factors, this paper designs a multi-scale time-sharing elastic imaging algorithm based on image reconstruction time and data sample characteristics. Then, taking the burst imaging cohort and the calculation data set of new cervical cancer cases as the objects, based on the difficulties of cervical cancer feature modeling, this paper proposes the transfer learning algorithm of clinical and pathological features of cervical cancer. Finally, a medical intelligent computing system for cervical cancer pathology analysis and calculation with high efficiency and reliability is established. A series of proposed algorithms are compared with single-scale Retinex (SSR), which is based on single-scale Retinex migration learning (SSR-TL). The experimental results show that the proposed algorithm in cervical cancer pathological imaging and scoring, as well as the feature extraction and recognition of lesions, especially the efficiency of system execution, is obviously due to the comparison algorithm.
Collapse
Affiliation(s)
- Xiaojun Dong
- Hunan University of Medicine, Huaihua, 418000, China.
| | - Hongmei Du
- The First People's Hospital of Huaihua, City, Huaihua, 418000, China
| | - Haichen Guan
- Hunan University of Medicine, Huaihua, 418000, China
| | - Xuezhen Zhang
- The First People's Hospital of Huaihua, City, Huaihua, 418000, China
| |
Collapse
|
13
|
Zhai J, Li H. An Improved Full Convolutional Network Combined with Conditional Random Fields for Brain MR Image Segmentation Algorithm and its 3D Visualization Analysis. J Med Syst 2019; 43:292. [PMID: 31338693 DOI: 10.1007/s10916-019-1424-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2019] [Accepted: 07/14/2019] [Indexed: 01/27/2023]
Abstract
Existing brain region segmentation algorithms based on deep convolutional neural networks (CNN) are inefficient for object boundary segmentation. In order to enhance the segmentation accuracy of brain tissue, this paper proposed an object region segmentation algorithm that combines pixel-level information and semantic information. Firstly, we extract semantic information by CNN with the attention module and get the coarse segmentation results through a specific pixel-level classifier. Then, we exploit conditional random fields to model the relationship between the underlying pixels so as to get local features. Finally, the semantic information and the local pixel-level information are respectively used as the unary potential and the binary potential of the Gibbs distribution, and the combination of both can obtain the fine region segmentation algorithm based on the fusion of pixel-level information and the semantic information. A large number of qualitative and quantitative test results show that our proposed algorithm has higher precision than the existing state-of-the-art deep feature models, which can better solve the problem of rough edge segmentation and produce good 3D visualization effect.
Collapse
Affiliation(s)
- Jiemin Zhai
- Department of Neurology, Xi'an XD Group Hospital, Xi'an, 710077, Shaanxi, China.
| | - Huiqi Li
- Department of Neurology, Xi'an XD Group Hospital, Xi'an, 710077, Shaanxi, China
| |
Collapse
|
14
|
Li B, Ding S, Song G, Li J, Zhang Q. Computer-Aided Diagnosis and Clinical Trials of Cardiovascular Diseases Based on Artificial Intelligence Technologies for Risk-Early Warning Model. J Med Syst 2019; 43:228. [PMID: 31197490 DOI: 10.1007/s10916-019-1346-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2019] [Accepted: 05/20/2019] [Indexed: 11/25/2022]
Abstract
The use of artificial intelligence in medicine is currently an issue of great interest, especially with regard to the diagnostic or predictive analysis of medical data. In order to achieve the regional medical and public health data analysis through artificial intelligence technologies, spark data analysis is adopted as the research platform for hypertension patients, and artificial intelligence technologies are used to preprocess the data with inconsistency, redundancy, incompleteness, noise and error; Aiming at the unbalanced data sets, the Z-score standard is adopted to convert data into usable form suitable for data mining. And, the application of Logistic, Naive Bayesian regression, and support vector machine based on three groups of different prognosis in severe cases, including stroke, heart failure and renal failure symptoms, establish the risk early warning model for 3 years time. In addition, to select the optimal feature subset based on medicine big-data features, the model simplification and optimization are done in training process, the experimental results show that the feature subset selection can ensure the classification performance similar to the clinical features of the model. Therefore, according to chronic cardiovascular disease, acute cardiovascular events and cardiovascular events caused by critical illness events, we screen out the relevant prognosis of serious illness (stroke, heart failure, renal failure), which is related to the prognosis of serious illness. Targeted prevention has a guiding role and practical significance according to the results of artificial intelligence analysis.
Collapse
Affiliation(s)
- Bin Li
- The First Affiliated Hospital of Bengbu Medical College, Bengbu, 233004, Anhui, China.
- School of Management HeFei University of Technology, Hefei, 230009, Anhui, China.
| | - Shuai Ding
- School of Management HeFei University of Technology, Hefei, 230009, Anhui, China
| | - Guolei Song
- The First Affiliated Hospital of Bengbu Medical College, Bengbu, 233004, Anhui, China
| | - Jiajia Li
- The First Affiliated Hospital of Bengbu Medical College, Bengbu, 233004, Anhui, China
| | - Qian Zhang
- The First Affiliated Hospital of Bengbu Medical College, Bengbu, 233004, Anhui, China
| |
Collapse
|
15
|
Deng W, Shi Q, Luo K, Yang Y, Ning N. Brain Tumor Segmentation Based on Improved Convolutional Neural Network in Combination with Non-quantifiable Local Texture Feature. J Med Syst 2019; 43:152. [PMID: 31016467 DOI: 10.1007/s10916-019-1289-2] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2019] [Accepted: 04/11/2019] [Indexed: 02/05/2023]
Abstract
Accurate and reliable brain tumor segmentation is a critical component in cancer diagnosis. According to deep learning model, a novel brain tumor segmentation method is developed by integrating fully convolutional neural networks (FCNN) and dense micro-block difference feature (DMDF) into a unified framework so as to obtain segmentation results with appearance and spatial consistency. Firstly, we propose a local feature to describe the rotation invariant property of the texture. In order to deal with the change of rotation and scale in texture image, Fisher vector encoding method is used to analyze the texture feature, which can combine with the scale information without increasing the dimension of the local feature. The obtained local features have strong robustness to rotation and gray intensity variation. Then, the non-quantifiable local feature is fused to the FCNN to perform fine boundary segmentation. Since brain tumors occupy a small portion of the image, deconvolutional layers are designed with skip connections to obtain a high quality feature map. Compared with the traditional MRI brain tumor segmentation methods, the experimental results show that the segmentation accuracy and stability has been greatly improved. Average Dice index can be up to 90.98%. And the proposed method has very high real-time performance, where brain tumor image can segment within 1 s.
Collapse
Affiliation(s)
- Wu Deng
- Information Center, West China Hospital of Sichuan university, Chengdu, 610000, Sichuan, China
| | - Qinke Shi
- Information Center, West China Hospital of Sichuan university, Chengdu, 610000, Sichuan, China
| | - Kai Luo
- Information Center, West China Hospital of Sichuan university, Chengdu, 610000, Sichuan, China
| | - Yi Yang
- Information Center, West China Hospital of Sichuan university, Chengdu, 610000, Sichuan, China
| | - Ning Ning
- Department of Orthopaedics, West China Hospital of Sichuan University, Chengdu, 610000, Sichuan, China.
| |
Collapse
|
16
|
Fuzzy Rough C-Mean Based Unsupervised CNN Clustering for Large-Scale Image Data. APPLIED SCIENCES-BASEL 2018. [DOI: 10.3390/app8101869] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Deep learning has been well-known for a couple of years, and it indicates incredible possibilities for unsupervised learning of representations with the clustering algorithm. The forms of Convolution Neural Networks (CNN) are now state-of-the-art for many recognition and clustering tasks. However, with the perpetual incrementation of digital images, there exist more and more redundant, irrelevant, and noisy samples which cause CNN running to gradually decrease, and its clustering accuracy decreases concurrently. To conquer these issues, we proposed an effective clustering method for a large-scale image dataset which combines CNN and a Fuzzy-Rough C-Mean (FRCM) clustering algorithm. The main idea is that first a high-level representation, learned by multi-layers of CNN with one clustering layer, produce the initial cluster center, then during training image clusters, and representations, are updating jointly. FRCM is utilized to update the cluster centers in the forward pass, while the parameters of proposed CNN are updated by the backward pass based on Stochastic Gradient Descent (SGD). The concept of the rough set of lower and boundary approximations deal with uncertainty, vagueness, and incompleteness in cluster definition, and fuzzy sets enable efficient handling of overlapping partitions in the noisy environment. The experiment results show that the proposed FRCM based unsupervised CNN clustering method is better than the standard K-Mean, Fuzzy C-Mean, FRCM and also other deep-learning-based clustering algorithms on large-scale image data.
Collapse
|
17
|
Qian P, Zhou J, Jiang Y, Liang F, Zhao K, Wang S, Su KH, Muzic RF. Multi-View Maximum Entropy Clustering by Jointly Leveraging Inter-View Collaborations and Intra-View-Weighted Attributes. IEEE ACCESS : PRACTICAL INNOVATIONS, OPEN SOLUTIONS 2018; 6:28594-28610. [PMID: 31289704 PMCID: PMC6615759 DOI: 10.1109/access.2018.2825352] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
As a dedicated countermeasure for heterogeneous multi-view data, multi-view clustering is currently a hot topic in machine learning. However, many existing methods either neglect the effective collaborations among views during clustering or do not distinguish the respective importance of attributes in views, instead treating them equivalently. Motivated by such challenges, based on maximum entropy clustering (MEC), two specialized criteria-inter-view collaborative learning (IEVCL) and intra-view-weighted attributes (IAVWA)-are first devised as the bases. Then, by organically incorporating IEVCL and IAVWA into the formulation of classic MEC, a novel, collaborative multi-view clustering model and the matching algorithm referred to as the view-collaborative, attribute-weighted MEC (VC-AW-MEC) are proposed. The significance of our efforts is three-fold: 1) both IEVCL and IAVWA are dedicatedly devised based on MEC so that the proposed VC-AW-MEC is qualified to effectively handle as many multi-view data scenes as possible; 2) IEVCL is competent in seeking the consensus across all involved views throughout clustering, whereas IAVWA is capable of adaptively discriminating the individual impact regarding the attributes within each view; and 3) benefiting from jointly leveraging IEVCL and IAVWA, compared with some existing state-of-the-art approaches, the proposed VC-AW-MEC algorithm generally exhibits preferable clustering effectiveness and stability on heterogeneous multi-view data. Our efforts have been verified in many synthetic or real-world multi-view data scenes.
Collapse
Affiliation(s)
- Pengjiang Qian
- School of Digital Media, Jiangnan University, Wuxi 214122, China
- Department of Radiology, University Hospitals, Case Western Reserve University, Cleveland, OH 44106, USA
- Case Center for Imaging Research, University Hospitals, Case Western Reserve University, Cleveland, OH 44106, USA
| | - Jiaxu Zhou
- School of Digital Media, Jiangnan University, Wuxi 214122, China
| | - Yizhang Jiang
- School of Digital Media, Jiangnan University, Wuxi 214122, China
| | - Fan Liang
- Department of Radiology, University Hospitals, Case Western Reserve University, Cleveland, OH 44106, USA
- Case Center for Imaging Research, University Hospitals, Case Western Reserve University, Cleveland, OH 44106, USA
| | - Kaifa Zhao
- School of Digital Media, Jiangnan University, Wuxi 214122, China
| | - Shitong Wang
- School of Digital Media, Jiangnan University, Wuxi 214122, China
| | - Kuan-Hao Su
- Department of Radiology, University Hospitals, Case Western Reserve University, Cleveland, OH 44106, USA
- Case Center for Imaging Research, University Hospitals, Case Western Reserve University, Cleveland, OH 44106, USA
| | - Raymond F Muzic
- Department of Radiology, University Hospitals, Case Western Reserve University, Cleveland, OH 44106, USA
- Case Center for Imaging Research, University Hospitals, Case Western Reserve University, Cleveland, OH 44106, USA
| |
Collapse
|
18
|
|