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Gribble GW. Naturally Occurring Organohalogen Compounds-A Comprehensive Review. PROGRESS IN THE CHEMISTRY OF ORGANIC NATURAL PRODUCTS 2023; 121:1-546. [PMID: 37488466 DOI: 10.1007/978-3-031-26629-4_1] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/26/2023]
Abstract
The present volume is the third in a trilogy that documents naturally occurring organohalogen compounds, bringing the total number-from fewer than 25 in 1968-to approximately 8000 compounds to date. Nearly all of these natural products contain chlorine or bromine, with a few containing iodine and, fewer still, fluorine. Produced by ubiquitous marine (algae, sponges, corals, bryozoa, nudibranchs, fungi, bacteria) and terrestrial organisms (plants, fungi, bacteria, insects, higher animals) and universal abiotic processes (volcanos, forest fires, geothermal events), organohalogens pervade the global ecosystem. Newly identified extraterrestrial sources are also documented. In addition to chemical structures, biological activity, biohalogenation, biodegradation, natural function, and future outlook are presented.
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Affiliation(s)
- Gordon W Gribble
- Department of Chemistry, Dartmouth College, Hanover, NH, 03755, USA.
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2
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Kim CY, Mitchell AJ, Glinkerman CM, Li FS, Pluskal T, Weng JK. The chloroalkaloid (-)-acutumine is biosynthesized via a Fe(II)- and 2-oxoglutarate-dependent halogenase in Menispermaceae plants. Nat Commun 2020; 11:1867. [PMID: 32313070 PMCID: PMC7170919 DOI: 10.1038/s41467-020-15777-w] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2019] [Accepted: 03/25/2020] [Indexed: 11/09/2022] Open
Abstract
Plant halogenated natural products are rare and harbor various interesting bioactivities, yet the biochemical basis for the involved halogenation chemistry is unknown. While a handful of Fe(II)- and 2-oxoglutarate-dependent halogenases (2ODHs) have been found to catalyze regioselective halogenation of unactivated C–H bonds in bacteria, they remain uncharacterized in the plant kingdom. Here, we report the discovery of dechloroacutumine halogenase (DAH) from Menispermaceae plants known to produce the tetracyclic chloroalkaloid (−)-acutumine. DAH is a 2ODH of plant origin and catalyzes the terminal chlorination step in the biosynthesis of (−)-acutumine. Phylogenetic analyses reveal that DAH evolved independently in Menispermaceae plants and in bacteria, illustrating an exemplary case of parallel evolution in specialized metabolism across domains of life. We show that at the presence of azide anion, DAH also exhibits promiscuous azidation activity against dechloroacutumine. This study opens avenues for expanding plant chemodiversity through halogenation and azidation biochemistry. Halogenated plant natural products are rare and plant halogenation enzymes are thus far unknown. Here Kim et al. identify a dechloroacutumine halogenase from Common Moonseed that catalyzes the final chlorination step in the biosynthesis of acutumine, a chloroalkaloid with selective cytotoxicity to cultured T cells.
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Affiliation(s)
- Colin Y Kim
- Whitehead Institute for Biomedical Research, Cambridge, MA, 02142, USA.,Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Andrew J Mitchell
- Whitehead Institute for Biomedical Research, Cambridge, MA, 02142, USA
| | | | - Fu-Shuang Li
- Whitehead Institute for Biomedical Research, Cambridge, MA, 02142, USA
| | - Tomáš Pluskal
- Whitehead Institute for Biomedical Research, Cambridge, MA, 02142, USA
| | - Jing-Ke Weng
- Whitehead Institute for Biomedical Research, Cambridge, MA, 02142, USA. .,Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
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3
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Büschleb M, Dorich S, Hanessian S, Tao D, Schenthal KB, Overman LE. Synthetic Strategies toward Natural Products Containing Contiguous Stereogenic Quaternary Carbon Atoms. Angew Chem Int Ed Engl 2016; 55:4156-86. [PMID: 26836448 PMCID: PMC4865016 DOI: 10.1002/anie.201507549] [Citation(s) in RCA: 257] [Impact Index Per Article: 32.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2015] [Indexed: 11/06/2022]
Abstract
Strategies for the total synthesis of complex natural products that contain two or more contiguous stereogenic quaternary carbon atoms in their intricate structures are reviewed with 12 representative examples. Emphasis has been put on methods to create quaternary carbon stereocenters, including syntheses of the same natural product by different groups, thereby showcasing the diversity of thought and individual creativity. A compendium of selected natural products containing two or more contiguous stereogenic quaternary carbon atoms and key reactions in their total or partial syntheses is provided in the Supporting Information.
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Affiliation(s)
- Martin Büschleb
- Department of Chemistry, Université de Montréal, Station Centre-Ville, C. P. 6128, Montréal, Qc, H3C 3J7, Canada
| | - Stéphane Dorich
- Department of Chemistry, Université de Montréal, Station Centre-Ville, C. P. 6128, Montréal, Qc, H3C 3J7, Canada
| | - Stephen Hanessian
- Department of Chemistry, Université de Montréal, Station Centre-Ville, C. P. 6128, Montréal, Qc, H3C 3J7, Canada.
| | - Daniel Tao
- Department of Chemistry, University of California, 1102 Natural Sciences II, Irvine, CA, 92697-2025, USA
| | - Kyle B Schenthal
- Department of Chemistry, University of California, 1102 Natural Sciences II, Irvine, CA, 92697-2025, USA
| | - Larry E Overman
- Department of Chemistry, University of California, 1102 Natural Sciences II, Irvine, CA, 92697-2025, USA
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Büschleb M, Dorich S, Hanessian S, Tao D, Schenthal KB, Overman LE. Strategien für die Synthese von Naturstoffen mit benachbarten stereogenen quartären Kohlenstoffatomen. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201507549] [Citation(s) in RCA: 74] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Martin Büschleb
- Department of Chemistry; Université de Montréal, Station Centre-Ville; C. P. 6128 Montréal Qc H3C 3J7 Kanada
| | - Stéphane Dorich
- Department of Chemistry; Université de Montréal, Station Centre-Ville; C. P. 6128 Montréal Qc H3C 3J7 Kanada
| | - Stephen Hanessian
- Department of Chemistry; Université de Montréal, Station Centre-Ville; C. P. 6128 Montréal Qc H3C 3J7 Kanada
| | - Daniel Tao
- Department of Chemistry; University of California; 1102 Natural Sciences II Irvine CA 92697-2025 USA
| | - Kyle B. Schenthal
- Department of Chemistry; University of California; 1102 Natural Sciences II Irvine CA 92697-2025 USA
| | - Larry E. Overman
- Department of Chemistry; University of California; 1102 Natural Sciences II Irvine CA 92697-2025 USA
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5
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Castle SL. Total synthesis of the congested propellane alkaloid (-)-acutumine. CHEM REC 2014; 14:580-91. [PMID: 24863243 DOI: 10.1002/tcr.201400005] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2014] [Indexed: 11/11/2022]
Abstract
The enantioselective total synthesis of (-)-acutumine is described. The synthetic strategy was inspired by the premise that the cyclohexenone ring could be derived from an aromatic precursor. After successful construction of a propellane model system, an initial attempt to prepare the spirocyclic subunit was thwarted by incorrect regioselectivity in a radical cyclization. A second-generation approach involving a radical-polar crossover reaction was successful, and the chemistry developed in the aforementioned model system was then applied to synthesize the natural product. Key reactions included a phenolic oxidation, a diastereoselective ketone allylation utilizing Nakamura's chiral allylzinc reagent, an anionic oxy-Cope rearrangement, an acid-promoted cyclization of a secondary amine onto an α,β-unsaturated ketal, and a regioselective methyl enol etherification of a 1,3-diketone.
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Affiliation(s)
- Steven L Castle
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, 84602, USA.
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Abstract
Research in the hasubanan and acutumine alkaloid fields up to 1970 was discussed under "morphine alkaloids" in Volume 13 of this chapter. Advances in the field of hasubanan alkaloids from 1971 to 1975 were reviewed in Volume 16 and from 1976 to 1986 in Volume 33. This chapter extends the information in the three preceding reviews to hasubanan alkaloid literature published from 1987 to June 2013. This chapter covers acutumine alkaloid literature since (-)-acutumine (3) was isolated in 1929. This chapter includes occurrence and physical constants, new alkaloids, synthesis, biosynthesis, and pharmacology. Section 1 introduces the foremost alkaloids, (-)-hasubanonine (1) and (-)-acutumine (3), and the numbering systems of the hasubanan (2) and acutumine (4) skeletons. Section 2 details the occurrence and physical constants of 29 new hasubanan and 15 acutumine alkaloids. The isolation and structural determination of these new alkaloids are described in Section 3. Section 4 summarizes total syntheses and synthetic studies toward hasubanan and acutumine alkaloids. Completed syntheses of the hasubanan alkaloids (+)-cepharamine (ent-71), (-)-hasubanonine (1), (-)-runanine (8), (-)-delavayine (6), (+)-periglaucine B (19), and (-)-8-demethoxyrunanine (12) are reviewed. Completed syntheses of (-)-acutumine (3) and (-)-dechloroacutumine (52) are also described. Section 5 details biosyntheses of (-)-acutumine (3) advanced by Barton, Wipf, and Sugimoto. Section 6 summarizes pharmacological studies of hasubanan and acutumine alkaloids. Opioid receptor affinity, anti-HBV activity, and antimicrobial activity of hasubanan alkaloids are reported. Antiamnesic properties, cytotoxicity, and anti-HBV activity of acutumine alkaloids are described.
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Affiliation(s)
- Sandra M King
- Department of Chemistry, Yale University, New Haven, Connecticut, USA
| | - Seth B Herzon
- Department of Chemistry, Yale University, New Haven, Connecticut, USA.
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Affiliation(s)
- Stéphane P. Roche
- Department of Chemistry, Center for Chemical Methodology and Library Development, Boston University, 590 Commonwealth Avenue, Boston, MA 02215, USA
| | - David J. Aitken
- Université Paris‐Sud 11, Laboratoire de Synthèse Organique & Méthodologie, ICMMO (CNRS UMR 8182), 15 rue Georges Clemenceau, 91405 Orsay cedex, France, Fax: +33‐1‐69156278
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Li F, Tartakoff SS, Castle SL. Enantioselective total synthesis of (-)-acutumine. J Org Chem 2010; 74:9082-93. [PMID: 19904909 DOI: 10.1021/jo902006q] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
An account of the total synthesis of the tetracyclic alkaloid (-)-acutumine is presented. A first-generation approach to the spirocyclic subunit was unsuccessful as a result of incorrect regioselectivity in a radical cyclization. However, this work spawned a second-generation strategy in which the spirocycle was fashioned via a radical-polar crossover reaction. This process merged an intramolecular radical conjugate addition with an enolate hydroxylation and created two stereocenters with excellent diastereoselectivity. The reaction was promoted by irradiation with a sunlamp, and a ditin reagent was required for aryl radical formation. These facts suggest that the substrate may function as a sensitizer, thereby facilitating homolytic cleavage of the ditin reagent. The propellane motif of the target was then installed via annulation of a pyrrolidine ring onto the spirocycle. The sequence of reactions used included a phenolic oxidation, an asymmetric ketone allylation mediated by Nakamura's chiral allylzinc reagent, an anionic oxy-Cope rearrangement, a one-pot ozonolysis-reductive amination, and a Lewis acid promoted cyclization of an amine onto an alpha,beta-unsaturated dimethyl ketal. Further studies of the asymmetric ketone allylation demonstrated the ability of the Nakamura reagent to function well in a mismatched situation. A TiCl(4)-catalyzed regioselective methyl enol etherification of a 1,3-diketone completed the synthesis.
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Affiliation(s)
- Fang Li
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, USA
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Conversion of dechlorodauricumine into miharumine by a cell-free preparation from cultured roots of Menispermum dauricum. Biosci Biotechnol Biochem 2009; 73:440-2. [PMID: 19202273 DOI: 10.1271/bbb.80596] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Dechlorodauricumine (5) and dechloroacutumine (6) were converted to miharumine (7) and dechloroacutumidine (8), respectively, by a cell-free preparation from cultured roots of Menispermum dauricum in the presence of FAD. The structures of 7 and 8 were elucidated on the basis of spectroscopic analyses and chemical conversion.
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Sugimoto Y, Ueyama T. Production of (+)-5-deoxystrigol by Lotus japonicus root culture. PHYTOCHEMISTRY 2008; 69:212-7. [PMID: 17655890 DOI: 10.1016/j.phytochem.2007.06.011] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2007] [Revised: 04/19/2007] [Accepted: 06/02/2007] [Indexed: 05/15/2023]
Abstract
Lotus japonicus roots, cultured in a modified B5 medium, produced and secreted germination stimulants that induced Striga hermonthica seed germination. The germination-inducing activity was detected both in the roots and the culture filtrate. Following bioassay-guided purification procedures, an active compound was isolated from hexane extracts of the roots and the culture filtrate. Based on chromatographic behaviour on HPLC, and 1H NMR, UV, MS and CD spectroscopic analyses, the germination stimulant was identified as (+)-5-deoxystrigol.
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Affiliation(s)
- Yukihiro Sugimoto
- Graduate School of Science and Technology, Kobe University, Rokkodai, Nada, Kobe 657-8501, Japan.
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