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For: Kotera M, Goto S, Kanehisa M. Predictive genomic and metabolomic analysis for the standardization of enzyme data. ACTA ACUST UNITED AC 2014. [DOI: 10.1016/j.pisc.2014.02.003] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Number Cited by Other Article(s)
1
Kalia A, Krishnan D, Hassoun S. CSI: Contrastive data Stratification for Interaction prediction and its application to compound-protein interaction prediction. Bioinformatics 2023;39:btad456. [PMID: 37490457 PMCID: PMC10423023 DOI: 10.1093/bioinformatics/btad456] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Revised: 05/10/2023] [Accepted: 07/24/2023] [Indexed: 07/27/2023]  Open
2
Jiang J, Liu LP, Hassoun S. Learning graph representations of biochemical networks and its application to enzymatic link prediction. Bioinformatics 2021;37:793-799. [PMID: 33051674 PMCID: PMC8097755 DOI: 10.1093/bioinformatics/btaa881] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2020] [Revised: 08/01/2020] [Accepted: 09/29/2020] [Indexed: 11/20/2022]  Open
3
Functional and informatics analysis enables glycosyltransferase activity prediction. Nat Chem Biol 2018;14:1109-1117. [DOI: 10.1038/s41589-018-0154-9] [Citation(s) in RCA: 52] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2017] [Accepted: 09/19/2018] [Indexed: 11/08/2022]
4
Kotera M, Goto S. Metabolic pathway reconstruction strategies for central metabolism and natural product biosynthesis. Biophys Physicobiol 2016;13:195-205. [PMID: 27924274 PMCID: PMC5042172 DOI: 10.2142/biophysico.13.0_195] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2016] [Accepted: 06/20/2016] [Indexed: 12/22/2022]  Open
5
Dönertaş HM, Martínez Cuesta S, Rahman SA, Thornton JM. Characterising Complex Enzyme Reaction Data. PLoS One 2016;11:e0147952. [PMID: 26840640 PMCID: PMC4740462 DOI: 10.1371/journal.pone.0147952] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2015] [Accepted: 01/11/2016] [Indexed: 01/05/2023]  Open
6
Kotera M, Nishimura Y, Nakagawa ZI, Muto A, Moriya Y, Okamoto S, Kawashima S, Katayama T, Tokimatsu T, Kanehisa M, Goto S. PIERO ontology for analysis of biochemical transformations: effective implementation of reaction information in the IUBMB enzyme list. J Bioinform Comput Biol 2015;12:1442001. [PMID: 25385078 DOI: 10.1142/s0219720014420013] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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