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Khajoei Nasab F, Shakoori Z, Zeraatkar A. Modeling the richness and spatial distribution of the wild relatives of Iranian pears (Pyrus L.) for conservation management. Sci Rep 2024; 14:18196. [PMID: 39107434 PMCID: PMC11303712 DOI: 10.1038/s41598-024-69135-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Accepted: 07/31/2024] [Indexed: 08/10/2024] Open
Abstract
The preservation of the genetic resources of crop wild relatives (CWRs) is crucial for food production systems and is considered a vital measure for global agricultural health and food security. The identification of potential areas where CWRs can thrive is one of the first steps towards their conservation. In this study, we used a maximum entropy model (MaxEnt) to determine the habitat suitability of seven wild relatives of pears (Pyrus L.) for the first time. We aimed to identify high-priority areas for conservation and determine the hotspots for rich biodiversity in Iran. The study showed excellent predictive performance for all species studied (AUC value ≥ 90). The soil depth, solar radiation, minimum temperature of the coldest month (Bio6), and precipitation of the wettest quarter (Bio16) were the main environmental factors that influenced the habitat suitability of all seven species, according to permutation importance. The projected maps revealed that P. elaeagnifolia had the largest suitable habitat area, while P. glabra had the lowest. The results also showed that less than 5% of the suitable habitats for these seven species were in protected areas. This research highlights the need for national preservation policies and the development of cultivation and rehabilitation strategies for these threatened species.
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Affiliation(s)
- Farzaneh Khajoei Nasab
- Research Division of Natural Resources, Chaharmahal and Bakhtiari Agricultural and Natural Resources Research and Education Center (AREEO), Shahrekord, Iran.
| | - Zahra Shakoori
- Department of Biodiversity and Ecosystem Management, Environmental Sciences Research Institute, Shahid Beheshti University, Tehran, Iran
| | - Amin Zeraatkar
- Research Division of Natural Resources, Chaharmahal and Bakhtiari Agricultural and Natural Resources Research and Education Center (AREEO), Shahrekord, Iran
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Bhatta KP, Mottl O, Felde VA, Grytnes JA, Reitalu T, Birks HH, Birks HJB, Vetaas OR. Latitudinal gradients in the phylogenetic assembly of angiosperms in Asia during the Holocene. Sci Rep 2024; 14:17940. [PMID: 39095414 PMCID: PMC11297032 DOI: 10.1038/s41598-024-67650-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Accepted: 07/15/2024] [Indexed: 08/04/2024] Open
Abstract
Spatio-temporal assessment of phylogenetic diversity gradients during the Holocene (past 12,000 years) provides an opportunity for a deeper understanding of the dynamics of species co-occurrence patterns under environmental fluctuations. Using two robust metrics of phylogenetic dispersion (PD) and 99 fossil pollen sequences containing 6557 samples/assemblages, we analyse spatio-temporal variation in PD of angiosperms and its relationship with Holocene climate in central Asia. Overall, PD throughout the Holocene decreases linearly with increasing latitude, except for a rise in mean nearest taxon distance from ca. 25 to 35° N. This indicates that phylogenetically divergent taxa decrease progressively with increasing latitude, leaving more phylogenetically closely related taxa in the assemblages, thereby increasing phylogenetic relatedness among the co-occurring taxa. The latitudinal gradient of PD has not been consistent during the Holocene, and this temporal variation is concordant with the Holocene climate dynamics. In general, profound temporal changes in the latitudinal PD toward higher latitudes implies that the major environmental changes during the Holocene have driven considerable spatio-temporal changes in the phylogenetic assembly of high-latitude angiosperm assemblages. Our results suggest that environmental filtering and the tendency of taxa and lineages to retain ancestral ecological features and geographic distributions (phylogenetic niche conservatism) are the main mechanisms underlying the phylogenetic assembly of angiosperms along the climate-latitudinal gradient. Ongoing environmental changes may pose future profound phylogenetic changes in high-latitude plant assemblages, which are adapted to harsh environmental conditions, and therefore are phylogenetically less dispersed (more conservative or clustered).
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Affiliation(s)
- Kuber P Bhatta
- Department of Biological Sciences, University of Bergen, PO Box 7803, 5020, Bergen, Norway.
| | - Ondřej Mottl
- Department of Biological Sciences, University of Bergen, PO Box 7803, 5020, Bergen, Norway
- Bjerknes Centre for Climate Research, 5020, Bergen, Norway
- Center for Theoretical Study, Charles University, Jilská 1, 11000, Prague, Czech Republic
- Department of Botany, Faculty of Science, Charles University, Benátská 2, 12801, Prague, Czech Republic
| | - Vivian A Felde
- Department of Biological Sciences, University of Bergen, PO Box 7803, 5020, Bergen, Norway
- Bjerknes Centre for Climate Research, 5020, Bergen, Norway
| | - John-Arvid Grytnes
- Department of Biological Sciences, University of Bergen, PO Box 7803, 5020, Bergen, Norway
| | - Triin Reitalu
- Institute of Ecology and Earth Sciences, University of Tartu, J. Liivi tn 2, 50409, Tartu, Estonia
- Institute of Geology, Tallinn University of Technology, Ehitajate tee 5, 19086, Tallinn, Estonia
| | - Hilary H Birks
- Department of Biological Sciences, University of Bergen, PO Box 7803, 5020, Bergen, Norway
- Bjerknes Centre for Climate Research, 5020, Bergen, Norway
| | - H John B Birks
- Department of Biological Sciences, University of Bergen, PO Box 7803, 5020, Bergen, Norway
- Bjerknes Centre for Climate Research, 5020, Bergen, Norway
- Environmental Change Research Centre, University College London, Gower Street, London, WC1 6BT, UK
| | - Ole R Vetaas
- Department of Geography, University of Bergen, PO Box 7802, 5020, Bergen, Norway
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Li G, Zhao X, Yang J, Hu S, Ponnu J, Kimura S, Hwang I, Torii KU, Hou H. Water wisteria genome reveals environmental adaptation and heterophylly regulation in amphibious plants. PLANT, CELL & ENVIRONMENT 2024. [PMID: 39076061 DOI: 10.1111/pce.15050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Revised: 07/03/2024] [Accepted: 07/12/2024] [Indexed: 07/31/2024]
Abstract
Heterophylly is a phenomenon whereby an individual plant dramatically changes leaf shape in response to the surroundings. Hygrophila difformis (Acanthaceae; water wisteria), has recently emerged as a model plant to study heterophylly because of its striking leaf shape variation in response to various environmental factors. When submerged, H. difformis often develops complex leaves, but on land it develops simple leaves. Leaf complexity is also influenced by other factors, such as light density, humidity, and temperature. Here, we sequenced and assembled the H. difformis chromosome-level genome (scaffold N50: 60.43 Mb, genome size: 871.92 Mb), which revealed 36 099 predicted protein-coding genes distributed over 15 pseudochromosomes. H. difformis diverged from its relatives during the Oligocene climate-change period and expanded gene families related to its amphibious habit. Genes related to environmental stimuli, leaf development, and other pathways were differentially expressed in submerged and terrestrial conditions, possibly modulating morphological and physiological acclimation to changing environments. We also found that auxin plays a role in H. difformis heterophylly. Finally, we discovered candidate genes that respond to different environmental conditions and elucidated the role of LATE MERISTEM IDENTITY 1 (LMI1) in heterophylly. We established H. difformis as a model for studying interconnections between environmental adaptation and morphogenesis.
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Affiliation(s)
- Gaojie Li
- The State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, Hubei, China
- College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Xuyao Zhao
- The State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, Hubei, China
- College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Jingjing Yang
- The State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, Hubei, China
- College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Shiqi Hu
- Laboratory of Marine Biological Resources Development and Utilization, Zhejiang Marine Development Research Institute, Zhoushan, Zhejiang, China
| | - Jathish Ponnu
- Joseph Gottlieb Kölreuter Institute for Plant Sciences, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Seisuke Kimura
- Faculty of Life Sciences, Kyoto Sangyo University, Kyoto, Japan
- Center for Plant Sciences, Kyoto Sangyo University, Kyoto, Japan
| | - Inhwan Hwang
- Department of Life Science, Pohang University of Science and Technology, Pohang, South Korea
| | - Keiko U Torii
- Institute of Transformative Biomolecules (WPI-ITbM), Nagoya University, Nagoya, Aichi, Japan
- Howard Hughes Medical Institute, The University of Texas at Austin, Austin, Texas, USA
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, USA
| | - Hongwei Hou
- The State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, Hubei, China
- College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing, China
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Sun S, Zhang Y, Wang N, Yang W, Zhai Y, Wang H, Fan P, You C, Zheng P, Wang R. Changing effects of energy and water on the richness distribution pattern of the Quercus genus in China. FRONTIERS IN PLANT SCIENCE 2024; 15:1301395. [PMID: 38298826 PMCID: PMC10827969 DOI: 10.3389/fpls.2024.1301395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/24/2023] [Accepted: 01/02/2024] [Indexed: 02/02/2024]
Abstract
Climate varies along geographic gradients, causing spatial variations in the effects of energy and water on species richness and the explanatory power of different climatic factors. Species of the Quercus genus are important tree species in China with high ecological and socioeconomic value. To detect whether the effects of energy and water on species richness change along climatic gradients, this study built geographically weighted regression models based on species richness and climatic data. Variation partition analysis and hierarchical partitioning analysis were used to further explore the main climatic factors shaping the richness distribution pattern of Quercus in China. The results showed that Quercus species were mainly distributed in mountainous areas of southwestern China. Both energy and water were associated with species richness, with global slopes of 0.17 and 0.14, respectively. The effects of energy and water on species richness gradually increased as energy and water in the environment decreased. The interaction between energy and water altered the effect of energy, and in arid regions, the effects of energy and water were relatively stronger. Moreover, energy explained more variation in species richness in both the entire study area (11.5%) and different climate regions (up to 19.4%). The min temperature of coldest month was the main climatic variable forming the richness distribution pattern of Quercus in China. In conclusion, cold and drought are the critical climatic factors limiting the species richness of Quercus, and climate warming will have a greater impact in arid regions. These findings are important for understanding the biogeographic characteristics of Quercus and conserving biodiversity in China.
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Affiliation(s)
- Shuxia Sun
- Institute of Ecology and Biodiversity, School of Life Sciences, Shandong University, Qingdao, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Qingdao, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Qingdao, China
- Qingdao Key Laboratory of Forest and Wetland Ecology, Shandong University, Qingdao, China
| | - Yang Zhang
- Department of Statistics and Actuarial Science, Northern Illinois University, Dekalb, IL, United States
| | - Naixian Wang
- Institute of Ecology and Biodiversity, School of Life Sciences, Shandong University, Qingdao, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Qingdao, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Qingdao, China
- Qingdao Key Laboratory of Forest and Wetland Ecology, Shandong University, Qingdao, China
| | - Wenjun Yang
- Institute of Ecology and Biodiversity, School of Life Sciences, Shandong University, Qingdao, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Qingdao, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Qingdao, China
- Qingdao Key Laboratory of Forest and Wetland Ecology, Shandong University, Qingdao, China
| | - Yinuo Zhai
- Institute of Ecology and Biodiversity, School of Life Sciences, Shandong University, Qingdao, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Qingdao, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Qingdao, China
- Qingdao Key Laboratory of Forest and Wetland Ecology, Shandong University, Qingdao, China
| | - Hui Wang
- Institute of Ecology and Biodiversity, School of Life Sciences, Shandong University, Qingdao, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Qingdao, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Qingdao, China
- Qingdao Key Laboratory of Forest and Wetland Ecology, Shandong University, Qingdao, China
| | - Peixian Fan
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Qingdao, China
- Qingdao Key Laboratory of Forest and Wetland Ecology, Shandong University, Qingdao, China
| | - Chao You
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Qingdao, China
- Qingdao Key Laboratory of Forest and Wetland Ecology, Shandong University, Qingdao, China
| | - Peiming Zheng
- Institute of Ecology and Biodiversity, School of Life Sciences, Shandong University, Qingdao, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Qingdao, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Qingdao, China
- Qingdao Key Laboratory of Forest and Wetland Ecology, Shandong University, Qingdao, China
| | - Renqing Wang
- Institute of Ecology and Biodiversity, School of Life Sciences, Shandong University, Qingdao, China
- Shandong Provincial Engineering and Technology Research Center for Vegetation Ecology, Shandong University, Qingdao, China
- Qingdao Forest Ecology Research Station of National Forestry and Grassland Administration, Shandong University, Qingdao, China
- Qingdao Key Laboratory of Forest and Wetland Ecology, Shandong University, Qingdao, China
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Potential distribution of threatened maples in China under climate change: Implications for conservation. Glob Ecol Conserv 2022. [DOI: 10.1016/j.gecco.2022.e02337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
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Mo Y, Li T, Bao Y, Zhang J, Zhao Y, Ye J, Zhang Y, Wu W, Tang J, Li Z. Correlations and dominant climatic factors among diversity patterns of plant families, genera, and species. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.1010067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022] Open
Abstract
At present, the relationship between the diversity distribution patterns of different taxonomic levels of plants and climatic factors is still unclear. This paper explored the diversity pattern of vascular plant families, genera, and species in China at the municipal scale. It also studied the effects of accumulated temperature ≥ 10°C, annual precipitation, and hydrothermal base which reflect the effect of hydrothermal resources on the plant diversity pattern. The results showed that: There were extremely significant correlations among the diversities of plant families, genera, and species, and the interpretation degree of diversity between adjacent the taxonomic levels was more than 90%. The diversity pattern of plant families was mainly affected by dominant climatic state indicators such as the maximum value of accumulated temperature, annual precipitation, and hydrothermal base, and the gradient range of the hydrothermal base, which showed a clear latitudinal gradient law. The diversity pattern of plant species was found to be mainly dependent on the climatic heterogeneity indicators, being closely related to the heterogeneity indicators and sum indicators of the hydrothermal base. It was also affected by the range of precipitation gradient range. Plant genus and its diversity pattern are not only significantly affected by heterogeneity and sum indicators but also closely related to climate state indicators. In comparison with the humidity index in vegetation ecological studies, the related indicators of the hydrothermal base proposed in this paper excelled at revealing the relationship between climate and diversity patterns of plant families, genera, and species, and could effectively solve the species-area relationship issue in arid and low-temperature areas. The results of this paper have presented important theoretical and practical values for comprehensively understanding the correlation between climate and diversity of plant families, genera, and species, clarifying the impact of climate difference and climate change on plant diversity.
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Ye JW, Tian B, Li DZ. Monsoon intensification in East Asia triggered the evolution of its flora. FRONTIERS IN PLANT SCIENCE 2022; 13:1046538. [PMID: 36507402 PMCID: PMC9733597 DOI: 10.3389/fpls.2022.1046538] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/16/2022] [Accepted: 10/31/2022] [Indexed: 06/17/2023]
Abstract
INTRODUCTION East Asia (EA), which falls within the region of the Asian monsoon that is composed of the East Asia monsoon (EAM) and the Indian monsoon (IM), is known for its high species diversity and endemism. This has been attributed to extreme physiographical heterogeneity in conjunction with climate and sea-level changes during the Pleistocene, this hypothesis has been widely proven by phylogeographic studies. Recently, dated phylogenies have indicated that the origins (stem age) of the flora occurred after the Oligocene-Miocene boundary and are related to the establishment of the EAM. METHODS Hence, this study further examined whether the strengthening of the monsoons triggered floral evolution via a meta-analysis of the tempo-spatial pattern of evolutionary radiation dates (crown ages) of 101 endemic seed plant genera. RESULTS Taxonomic diversification began during the late Eocene, whereas the accumulated number of diversifications did not significantly accelerate until the late Miocene. The distribution of the weighted mean and the average divergence times in the EAM, IM, or transitional regions all fall within the mid-late Miocene. Fossils of the Tertiary relict genera are mostly and widely distributed outside EA and only half of the earliest fossils in the EA region are not older than Miocene, while their divergence times are mostly after the late Miocene. The pattern of divergence time of monotypic and polytypic taxa suggest the climatic changes after the late Pliocene exert more influence on monotypic taxa. DISCUSSION The two key stages of floral evolution coincide with the intensifications of the EAM and IM, especially the summer monsoon which brings a humid climate. An integrated review of previous studies concerning flora, genus, and species levels further supports our suggestion that monsoon intensification in EA triggered the evolution of its flora.
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Affiliation(s)
- Jun-Wei Ye
- Key Laboratory for Forest Resources Conservation and Utilization in the Southwest Mountains of China, Ministry of Education, Southwest Forestry University, Kunming, China
- Germplasm Bank of Wild Species in Southwest China, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
| | - Bin Tian
- Key Laboratory for Forest Resources Conservation and Utilization in the Southwest Mountains of China, Ministry of Education, Southwest Forestry University, Kunming, China
| | - De-Zhu Li
- Germplasm Bank of Wild Species in Southwest China, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
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