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Zhang C, Wang Y, Chen C, Long H, Bai J, Zeng J, Cao Z, Zhang B, Shen W, Tang F, Liang S, Sun C, Shu Y, Du X. A Mutation Network Method for Transmission Analysis of Human Influenza H3N2. Viruses 2020; 12:E1125. [PMID: 33022948 PMCID: PMC7601908 DOI: 10.3390/v12101125] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Revised: 09/29/2020] [Accepted: 10/01/2020] [Indexed: 11/16/2022] Open
Abstract
Characterizing the spatial transmission pattern is critical for better surveillance and control of human influenza. Here, we propose a mutation network framework that utilizes network theory to study the transmission of human influenza H3N2. On the basis of the mutation network, the transmission analysis captured the circulation pattern from a global simulation of human influenza H3N2. Furthermore, this method was applied to explore, in detail, the transmission patterns within Europe, the United States, and China, revealing the regional spread of human influenza H3N2. The mutation network framework proposed here could facilitate the understanding, surveillance, and control of other infectious diseases.
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Affiliation(s)
- Chi Zhang
- School of Public Health (Shenzhen), Sun Yat-sen University, Guangzhou 510006, China; (C.Z.); (Y.W.); (C.C.); (H.L.); (J.B.); (J.Z.); (Z.C.); (B.Z.); (W.S.); (F.T.); (S.L.); (C.S.); (Y.S.)
| | - Yinghan Wang
- School of Public Health (Shenzhen), Sun Yat-sen University, Guangzhou 510006, China; (C.Z.); (Y.W.); (C.C.); (H.L.); (J.B.); (J.Z.); (Z.C.); (B.Z.); (W.S.); (F.T.); (S.L.); (C.S.); (Y.S.)
| | - Cai Chen
- School of Public Health (Shenzhen), Sun Yat-sen University, Guangzhou 510006, China; (C.Z.); (Y.W.); (C.C.); (H.L.); (J.B.); (J.Z.); (Z.C.); (B.Z.); (W.S.); (F.T.); (S.L.); (C.S.); (Y.S.)
| | - Haoyu Long
- School of Public Health (Shenzhen), Sun Yat-sen University, Guangzhou 510006, China; (C.Z.); (Y.W.); (C.C.); (H.L.); (J.B.); (J.Z.); (Z.C.); (B.Z.); (W.S.); (F.T.); (S.L.); (C.S.); (Y.S.)
| | - Junbo Bai
- School of Public Health (Shenzhen), Sun Yat-sen University, Guangzhou 510006, China; (C.Z.); (Y.W.); (C.C.); (H.L.); (J.B.); (J.Z.); (Z.C.); (B.Z.); (W.S.); (F.T.); (S.L.); (C.S.); (Y.S.)
| | - Jinfeng Zeng
- School of Public Health (Shenzhen), Sun Yat-sen University, Guangzhou 510006, China; (C.Z.); (Y.W.); (C.C.); (H.L.); (J.B.); (J.Z.); (Z.C.); (B.Z.); (W.S.); (F.T.); (S.L.); (C.S.); (Y.S.)
| | - Zicheng Cao
- School of Public Health (Shenzhen), Sun Yat-sen University, Guangzhou 510006, China; (C.Z.); (Y.W.); (C.C.); (H.L.); (J.B.); (J.Z.); (Z.C.); (B.Z.); (W.S.); (F.T.); (S.L.); (C.S.); (Y.S.)
| | - Bing Zhang
- School of Public Health (Shenzhen), Sun Yat-sen University, Guangzhou 510006, China; (C.Z.); (Y.W.); (C.C.); (H.L.); (J.B.); (J.Z.); (Z.C.); (B.Z.); (W.S.); (F.T.); (S.L.); (C.S.); (Y.S.)
| | - Wei Shen
- School of Public Health (Shenzhen), Sun Yat-sen University, Guangzhou 510006, China; (C.Z.); (Y.W.); (C.C.); (H.L.); (J.B.); (J.Z.); (Z.C.); (B.Z.); (W.S.); (F.T.); (S.L.); (C.S.); (Y.S.)
| | - Feng Tang
- School of Public Health (Shenzhen), Sun Yat-sen University, Guangzhou 510006, China; (C.Z.); (Y.W.); (C.C.); (H.L.); (J.B.); (J.Z.); (Z.C.); (B.Z.); (W.S.); (F.T.); (S.L.); (C.S.); (Y.S.)
| | - Shiwen Liang
- School of Public Health (Shenzhen), Sun Yat-sen University, Guangzhou 510006, China; (C.Z.); (Y.W.); (C.C.); (H.L.); (J.B.); (J.Z.); (Z.C.); (B.Z.); (W.S.); (F.T.); (S.L.); (C.S.); (Y.S.)
| | - Caijun Sun
- School of Public Health (Shenzhen), Sun Yat-sen University, Guangzhou 510006, China; (C.Z.); (Y.W.); (C.C.); (H.L.); (J.B.); (J.Z.); (Z.C.); (B.Z.); (W.S.); (F.T.); (S.L.); (C.S.); (Y.S.)
| | - Yuelong Shu
- School of Public Health (Shenzhen), Sun Yat-sen University, Guangzhou 510006, China; (C.Z.); (Y.W.); (C.C.); (H.L.); (J.B.); (J.Z.); (Z.C.); (B.Z.); (W.S.); (F.T.); (S.L.); (C.S.); (Y.S.)
- Key Laboratory of Tropical Disease Control, Ministry of Education, Sun Yat-sen University, Guangzhou 510006, China
| | - Xiangjun Du
- School of Public Health (Shenzhen), Sun Yat-sen University, Guangzhou 510006, China; (C.Z.); (Y.W.); (C.C.); (H.L.); (J.B.); (J.Z.); (Z.C.); (B.Z.); (W.S.); (F.T.); (S.L.); (C.S.); (Y.S.)
- Key Laboratory of Tropical Disease Control, Ministry of Education, Sun Yat-sen University, Guangzhou 510006, China
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Gosak M, Markovič R, Dolenšek J, Rupnik MS, Marhl M, Stožer A, Perc M. Loosening the shackles of scientific disciplines with network science. Phys Life Rev 2018; 24:162-167. [DOI: 10.1016/j.plrev.2018.01.008] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2018] [Accepted: 01/19/2018] [Indexed: 02/09/2023]
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