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Pandey AK, Singh V, Dwivedi A. Comparative study of molecular docking, structural, electronic, vibrational and hydrogen bonding interactions on 4-hydroxy benzo hydrazide (4HBH) and its newly designed derivative [(E)–N′-((1H-Pyrrol-2-YL)methylene) –4-hydroxy benzo hydrazide and its isomers (I, II and III)] (potential inhibitors) for COVID-19 protease. MAIN GROUP CHEMISTRY 2021. [DOI: 10.3233/mgc-210039] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Studies have shown that hydrazides and thier derivatives are used for pharmaceutical and medicinal purposes. At present, the whole world is suffering for COVID-19 virus. There are some vaccines or medicines available to treat this disease all over the world. Today the one fourth of the world’s population is under lockdown condition. In this scenario, scientists from the whole world are doing different types of research on this disease. Being a molecular modeller, this inspires us to design new types of species (may be drugs) which may be capable for COVID-19 Protease. In the present effort, we have performed docking studies of title compounds with COVID-19 protein (6LU7) for anti-COVID-19 activity. A comparative quantum chemical calculations of molecular geometries (bond lengths and bond angles) of 4-Hydroxy Benzo Hydrazide (4HBH) and its newly designed derivatve [(E)-N′-((1H-Pyrrol-2-YL)Methylene) –4-Hydroxy Benzo Hydrazide and its isomers (I, II and III)] in the ground state have also been carried out due to its biological importance and compared with the similer type of compound found in literature i.e. benzohydrazide. The optimized geometry and wavenumber of the vibrational bands of the molecules have been calculated by density functional theory (DFT) using Becke’s three-parameters hybrid functional (B3LYP/CAM-B3LYP) with 6–311G (d, p) as the basis set. Vibrational wavenumbers are compared with the observed FT-IR and FTRaman spectra of 4-Hydroxy Benzo Hydrazide. TDDFT calculations are also done on the same level of theory and a theoretical UV-vis spectrum of title molecules are also drawn. HOMO-LUMO analysis has been done to describe the way the molecule interacts with other species. Natural bond orbitals (NBO) analysis has been carried out to inspect the intra- and inter- molecular hydrogen-bonding, conjugative and hyper conjugative interactions and their second order stabilization energy. Nonlinear optical (NLO) analysis has been performed to study the non-linear optical properties of the molecule by computing the first hyperpolarizability. The variation of thermodynamic properties with temperature has been studied. QATIM analysis shows that hydrogen bonding occurs in 4HBH, isomer II and III respectively.
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Affiliation(s)
- Anoop Kumar Pandey
- K. S. Saket Post Graduate College, Ram Manohar Lohia University, Ayodhya, India
| | | | - Apoorva Dwivedi
- Department of Applied Science and Huminities, Seth Vishambhar Nath Institute of Engineering and Technology, Barabanki, India
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Pisk J, Đilović I, Hrenar T, Cvijanović D, Pavlović G, Vrdoljak V. Effective methods for the synthesis of hydrazones, quinazolines, and Schiff bases: reaction monitoring using a chemometric approach. RSC Adv 2020; 10:38566-38577. [PMID: 35517547 PMCID: PMC9057299 DOI: 10.1039/d0ra06845d] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2020] [Accepted: 10/04/2020] [Indexed: 11/24/2022] Open
Abstract
Synthesis of hydrazones (1a–4a and 1b–4b), quinazolines (3c·MeOH and 3d·MeOH), and hydrazone-Schiff bases (4c and 4d) is achieved by combining suitable aldehydes (2,3- or 2,4-dihydroxybenzaldehyde) with four hydrazides (isonicotinic, nicotinic, and 2- or 4-aminobenzoic acid hydrazide). A suite of approaches for their preparation is described: solution-based synthesis, mechanosynthesis, and solid-state melt reactions. The mechanochemical approach is generally a better choice for the quinazolines, while the solid-state melt reaction is more efficient for derivatives of (iso)nicotinic based hydrazones. Crystalline amine-functionalised hydrazones 4a and 4b undergo post-synthetic modifications in reactions with 3- or 4-pyridinecarbaldehyde vapours to form hydrazone-Schiff bases 4a-3py, 4b-3py, 4a-4py, and 4b-4py. Mechanochemical and vapour-mediated reactions are followed by ex situ powder X-ray diffraction and IR-ATR methods, respectively. The chemometric analysis of these data using principal component analysis provided an insight into the reaction profiles and reaction times. Azines (5a and 5b), achieved from aldehydes and hydrazine, reversibly change colour in response to temperature changes. The structures of all products are ascertained by a combined use of spectroscopic and X-ray diffraction methods. The cytotoxic and antimicrobial activities of all compounds against selected human cancer cell lines and bacterial strains are evaluated. We compare different routes to prepare hydrazones, quinazolines, and hydrazone-Schiff bases: solution-based, vapor-mediated, mechanochemical, and solid-state melt synthesis.![]()
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Affiliation(s)
- Jana Pisk
- University of Zagreb, Faculty of Science, Department of Chemistry Horvatovac 102a 10000 Zagreb Croatia
| | - Ivica Đilović
- University of Zagreb, Faculty of Science, Department of Chemistry Horvatovac 102a 10000 Zagreb Croatia
| | - Tomica Hrenar
- University of Zagreb, Faculty of Science, Department of Chemistry Horvatovac 102a 10000 Zagreb Croatia
| | - Danijela Cvijanović
- University of Zagreb, School of Medicine, Department of Chemistry and Biochemistry Šalata 3 10000 Zagreb Croatia
| | - Gordana Pavlović
- University of Zagreb, Faculty of Textile Technology, Division of Applied Chemistry Prilaz baruna Filipovića 28a 10000 Zagreb Croatia
| | - Višnja Vrdoljak
- University of Zagreb, Faculty of Science, Department of Chemistry Horvatovac 102a 10000 Zagreb Croatia
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Chantrapromma S, Kwong HC, Prachumrat P, Kobkeatthawin T, Chia TS, Quah CK. Crystal structure of ( E)- N'-(3,4-di-hydroxy-benzyl-idene)-4-hy-droxy-benzohydrazide. Acta Crystallogr E Crystallogr Commun 2019; 75:1280-1283. [PMID: 31417807 PMCID: PMC6690444 DOI: 10.1107/s2056989019010442] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2019] [Accepted: 07/22/2019] [Indexed: 11/10/2022]
Abstract
In the title benzohydrazide derivative, C14H12N2O4, the azomethine C=N double bond has an E configuration. The hydrazide connecting bridge, (C=O)-(NH)-N=(CH), is nearly planar with C-C-N-N and C-N-N=C torsion angles of -177.33 (10) and -174.98 (12)°, respectively. The 4-hy-droxy-phenyl and 3,4-di-hydroxy-phenyl rings are slightly twisted, making a dihedral angle of 9.18 (6)°. In the crystal, mol-ecules are connected by N-H⋯O and O-H⋯O hydrogen bonds into a three-dimensional network, while further consolidated via π-π inter-actions [centroid-centroid distances = 3.6480 (8) and 3.7607 (8) Å]. The conformation is compared to those of related benzyl-idene-4-hy-droxy-benzohydrazide derivatives.
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Affiliation(s)
- Suchada Chantrapromma
- Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat-Yai, Songkhla 90112, Thailand
| | - Huey Chong Kwong
- Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor Darul Ehsan, Malaysia
| | - Patcharawadee Prachumrat
- Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat-Yai, Songkhla 90112, Thailand
| | - Thawanrat Kobkeatthawin
- Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat-Yai, Songkhla 90112, Thailand
| | - Tze Shyang Chia
- X-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
| | - Ching Kheng Quah
- X-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
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Abdel-Mottaleb M. Excited state intramolecular proton transfer (ESIPT) in the Photoresponsive Prototropic Schiff-Base N′-(2-hydroxybenzylidene)-4-hydroxybenzohydrazide: Computational Modeling Study. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.05.048] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Vibrational assignments, spectroscopic investigation (FT-IR and FT-Raman), NBO, MEP, HOMO‒LUMO analysis and intermolecular hydrogen bonding interactions of 7-fluoroisatin, 7-bromoisatin and 1-methylisatin ‒ A comparative study. J Mol Struct 2015. [DOI: 10.1016/j.molstruc.2015.08.033] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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Pino‐Cuevas A, Carballo R, Muñoz L, Vázquez‐López EM. Rhenium Complexes of Ligands Based on Stilbene – Synthesis, Characterization, Reactivity, and Conformational Analysis. Eur J Inorg Chem 2015. [DOI: 10.1002/ejic.201500500] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Arantxa Pino‐Cuevas
- Departamento de Química Inorgánica, Instituto de Investigación Biomédica (IBI) ‐ Universidade de Vigo, 36310 Vigo, Galicia, Spain, http://angus.uvigo.es
| | - Rosa Carballo
- Departamento de Química Inorgánica, Instituto de Investigación Biomédica (IBI) ‐ Universidade de Vigo, 36310 Vigo, Galicia, Spain, http://angus.uvigo.es
| | - Luis Muñoz
- Departamento de Química Orgánica, Universidade de Vigo, 36310 Vigo, Galicia, Spain
| | - Ezequiel M. Vázquez‐López
- Departamento de Química Inorgánica, Instituto de Investigación Biomédica (IBI) ‐ Universidade de Vigo, 36310 Vigo, Galicia, Spain, http://angus.uvigo.es
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Cattaneo M, Vergara MM, García Posse ME, Fagalde F, Parella T, Katz NE. Spectroscopic, electrochemical and computational studies of rhenium(I) and ruthenium(II) complexes incorporating the novel tetradentate ligand 1,4-bis(4-(4′-methyl)-2,2′-bipyridyl)-2,3-diaza-1,3-butadiene (BBDB) and its derivatives. Polyhedron 2014. [DOI: 10.1016/j.poly.2013.12.018] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Arjunan V, Jayaprakash A, Carthigayan K, Periandy S, Mohan S. Conformational, structural, vibrational and quantum chemical analysis on 4-aminobenzohydrazide and 4-hydroxybenzohydrazide--a comparative study. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2013; 108:100-114. [PMID: 23466320 DOI: 10.1016/j.saa.2013.01.076] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2012] [Revised: 01/29/2013] [Accepted: 01/31/2013] [Indexed: 06/01/2023]
Abstract
Experimental and theoretical quantum chemical studies were carried out on 4-hydroxybenzohydrazide (4HBH) and 4-aminobenzohydrazide (4ABH) using FTIR and FT-Raman spectral data. The structural characteristics and vibrational spectroscopic analysis were carried performed by quantum chemical methods with the hybrid exchange-correlation functional B3LYP using 6-31G(**), 6-311++G(**) and aug-cc-pVDZ basis sets. The most stable conformer of the title compounds have been determined from the analysis of potential energy surface. The stable molecular geometries, electronic and thermodynamic parameters, IR intensities, harmonic vibrational frequencies, depolarisation ratio and Raman intensities have been computed. Molecular electrostatic potential and frontier molecular orbitals were constructed to understand the electronic properties. The potential energy distributions (PEDs) were calculated to explain the mixing of fundamental modes. The theoretical geometrical parameters and the fundamental frequencies were compared with the experimental. The interactions of hydroxy and amino group substitutions on the characteristic vibrations of the ring and hydrazide group have been analysed.
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Affiliation(s)
- V Arjunan
- Department of Chemistry, Kanchi Mamunivar Centre for Post-Graduate Studies, Puducherry 605 008, India.
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Synthesis, spectroscopic, and DFT studies of rhenium(І) complexes with phenanthrolineimidazo ligands containing thienyl moieties. Inorganica Chim Acta 2013. [DOI: 10.1016/j.ica.2012.07.032] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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10
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Zhao F, Liu WQ, Xia HY, Wang YB. Towards an understanding of the absorption and emission spectra of rhenium(I) tricarbonyl polypyridine complexes containing NO2 group: A density functional theory study. COMPUT THEOR CHEM 2012. [DOI: 10.1016/j.comptc.2012.07.035] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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