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Cador A, Tognetti V, Joubert L, Popelier PLA. Aza-Michael Addition in Explicit Solvent: A Relative Energy Gradient-Interacting Quantum Atoms Study. Chemphyschem 2023:e202300529. [PMID: 37728125 DOI: 10.1002/cphc.202300529] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Revised: 09/09/2023] [Accepted: 09/17/2023] [Indexed: 09/21/2023]
Abstract
Aza-Michael additions are key reactions in organic synthesis. We investigate, from a theoretical and computational point of view, several examples ranging from weak to strong electrophiles in dimethylsulfoxide treated as explicit solvent. We use the REG-IQA method, which is a quantum topological energy decomposition (Interacting Quantum Atoms, IQA) coupled to a chemical-interpretation calculator (Relative Energy Gradient, REG). We focus on the rate-limiting addition step in order to unravel the different events taking place in this step, and understand the influence of solvent on the reaction, with an eye on predicting the Mayr electrophilicity. For the first time, a link is established between an REG-IQA analysis and experimental values.
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Affiliation(s)
- Aël Cador
- Normandy Univ., COBRA UMR 6014 & FR 3038, Université de Rouen, INSA Rouen, CNRS, 1 rue Tesnière, 76821, Mont St, Aignan Cedex, France
| | - Vincent Tognetti
- Normandy Univ., COBRA UMR 6014 & FR 3038, Université de Rouen, INSA Rouen, CNRS, 1 rue Tesnière, 76821, Mont St, Aignan Cedex, France
| | - Laurent Joubert
- Normandy Univ., COBRA UMR 6014 & FR 3038, Université de Rouen, INSA Rouen, CNRS, 1 rue Tesnière, 76821, Mont St, Aignan Cedex, France
| | - Paul L A Popelier
- Department of Chemistry, The University of Manchester, Manchester, M13 9PL, Great Britain
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2
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Cador A, Hoffmann G, Tognetti V, Joubert L. A theoretical study on aza-Michael additions. Theor Chem Acc 2022. [DOI: 10.1007/s00214-022-02921-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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3
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Mignot M, Schammé B, Tognetti V, Joubert L, Cardinael P, Peulon-Agasse V. Anthracenyl polar embedded stationary phases with enhanced aromatic selectivity. Part II: A density functional theory study. J Chromatogr A 2017; 1519:91-99. [DOI: 10.1016/j.chroma.2017.08.083] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2017] [Revised: 08/28/2017] [Accepted: 08/30/2017] [Indexed: 12/28/2022]
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4
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Chen P, Zhang L, Xue ZL, Wu YD, Zhang X. Density Functional Theory Study of the Reaction between d 0 Tungsten Alkylidyne Complexes and H 2O: Addition versus Hydrolysis. Inorg Chem 2017; 56:7111-7119. [PMID: 28581727 DOI: 10.1021/acs.inorgchem.7b00713] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The reactions of early-transition-metal complexes with H2O have been investigated. An understanding of these elementary steps promotes the design of precursors for the preparation of metal oxide materials or supported heterogeneous catalysts. Density functional theory (DFT) calculations have been conducted to investigate two elementary steps of the reactions between tungsten alkylidyne complexes and H2O, i.e., the addition of H2O to the W≡C bond and ligand hydrolysis. Four tungsten alkylidyne complexes, W(≡CSiMe3)(CH2SiMe3)3 (A-1), W(≡CSiMe3)(CH2tBu)3 (B-1), W(≡CtBu)(CH2tBu)3 (C-1), and W(≡CtBu)(OtBu)3 (D-1), have been compared. The DFT studies provide an energy profile of the two competing pathways. An additional H2O molecule can serve as a proton shuttle, accelerating the H2O addition reaction. The effect of atoms at the α and β positions has also been examined. Because the lone-pair electrons of an O atom at the α position can interact with the orbital of the proton, the barrier of the ligand-hydrolysis reaction for D-1 is dramatically reduced. Both the electronic and steric effects of the silyl group at the β position lower the barriers of both the H2O addition and ligand-hydrolysis reactions. These new mechanistic findings may lead to the further development of metal complex precursors.
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Affiliation(s)
- Ping Chen
- Lab of Computational Chemistry and Drug Design, Laboratory of Chemical Genomics, Peking University Shenzhen Graduate School , Shenzhen 518055, China
| | - Linxing Zhang
- Lab of Computational Chemistry and Drug Design, Laboratory of Chemical Genomics, Peking University Shenzhen Graduate School , Shenzhen 518055, China
| | - Zi-Ling Xue
- Department of Chemistry, University of Tennessee , Knoxville, Tennessee 37996, United States
| | - Yun-Dong Wu
- Lab of Computational Chemistry and Drug Design, Laboratory of Chemical Genomics, Peking University Shenzhen Graduate School , Shenzhen 518055, China.,College of Chemistry and Molecular Engineering, Peking University , Beijing 100871, China
| | - Xinhao Zhang
- Lab of Computational Chemistry and Drug Design, Laboratory of Chemical Genomics, Peking University Shenzhen Graduate School , Shenzhen 518055, China
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5
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Tognetti V, Bouzbouz S, Joubert L. A theoretical study of the diastereoselective allylation of aldehydes with new chiral allylsilanes. J Mol Model 2016; 23:5. [DOI: 10.1007/s00894-016-3173-z] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2016] [Accepted: 11/16/2016] [Indexed: 11/24/2022]
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Bendjeriou-Sedjerari A, Sofack-Kreutzer J, Minenkov Y, Abou-Hamad E, Hamzaoui B, Werghi B, Anjum DH, Cavallo L, Huang KW, Basset JM. Tungsten(VI) Carbyne/Bis(carbene) Tautomerization Enabled by N-Donor SBA15 Surface Ligands: A Solid-State NMR and DFT Study. Angew Chem Int Ed Engl 2016; 55:11162-6. [PMID: 27514022 DOI: 10.1002/anie.201605934] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2016] [Indexed: 11/11/2022]
Abstract
Designing supported well-defined bis(carbene) complexes remains a key challenge in heterogeneous catalysis. The reaction of W(≡CtBu)(CH2 tBu)3 with amine-modified mesoporous SBA15 silica, which has vicinal silanol/silylamine pairs [(≡SiOH)(≡SiNH2 )], leads to [(≡SiNH2 -)(≡SiO-)W(≡CHtBu)(CH2 tBu)2 ] and [(≡SiNH2 -)(≡SiO-)W(=CHtBu)2 (CH2 tBu). Variable temperature, (1) H-(1) H 2D double-quantum, (1) H-(13) C HETCOR, and HETCOR with spin diffusion solid-state NMR spectroscopy demonstrate tautomerization between the alkyl alkylidyne and the bis(alkylidene) on the SBA15 surface. Such equilibrium is possible through the coordination of W to the surface [(≡Si-OH)(≡Si-NH2 )] groups, which act as a [N,O] pincer ligand. DFT calculations provide a rationalization for the surface-complex tautomerization and support the experimental results. This direct observation of such a process shows the strong similarity between molecular mechanisms in homogeneous and heterogeneous catalysis. In propane metathesis (at 150 °C), the tungsten bis(carbene) tautomer is favorable, with a turnover number (TON) of 262. It is the highest TON among all the tungsten alkyl-supported catalysts.
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Affiliation(s)
- Anissa Bendjeriou-Sedjerari
- King Abdullah University of Science and Technology (KAUST), Kaust Catalysis Center (KCC), Thuwal, 23955-6900, Saudi Arabia
| | - Julien Sofack-Kreutzer
- King Abdullah University of Science and Technology (KAUST), Kaust Catalysis Center (KCC), Thuwal, 23955-6900, Saudi Arabia
| | - Yury Minenkov
- King Abdullah University of Science and Technology (KAUST), Kaust Catalysis Center (KCC), Thuwal, 23955-6900, Saudi Arabia
| | - Edy Abou-Hamad
- King Abdullah University of Science and Technology (KAUST), Kaust Catalysis Center (KCC), Thuwal, 23955-6900, Saudi Arabia
| | - Bilel Hamzaoui
- King Abdullah University of Science and Technology (KAUST), Kaust Catalysis Center (KCC), Thuwal, 23955-6900, Saudi Arabia
| | - Baraa Werghi
- King Abdullah University of Science and Technology (KAUST), Kaust Catalysis Center (KCC), Thuwal, 23955-6900, Saudi Arabia
| | - Dalaver H Anjum
- King Abdullah University of Science and Technology (KAUST), Kaust Catalysis Center (KCC), Thuwal, 23955-6900, Saudi Arabia
| | - Luigi Cavallo
- King Abdullah University of Science and Technology (KAUST), Kaust Catalysis Center (KCC), Thuwal, 23955-6900, Saudi Arabia
| | - Kuo-Wei Huang
- King Abdullah University of Science and Technology (KAUST), Kaust Catalysis Center (KCC), Thuwal, 23955-6900, Saudi Arabia
| | - Jean-Marie Basset
- King Abdullah University of Science and Technology (KAUST), Kaust Catalysis Center (KCC), Thuwal, 23955-6900, Saudi Arabia.
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7
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Bendjeriou-Sedjerari A, Sofack-Kreutzer J, Minenkov Y, Abou-Hamad E, Hamzaoui B, Werghi B, Anjum DH, Cavallo L, Huang KW, Basset JM. Tungsten(VI) Carbyne/Bis(carbene) Tautomerization Enabled by N-Donor SBA15 Surface Ligands: A Solid-State NMR and DFT Study. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201605934] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Anissa Bendjeriou-Sedjerari
- King Abdullah University of Science and Technology (KAUST), Kaust Catalysis Center (KCC); Thuwal 23955-6900 Saudi Arabia
| | - Julien Sofack-Kreutzer
- King Abdullah University of Science and Technology (KAUST), Kaust Catalysis Center (KCC); Thuwal 23955-6900 Saudi Arabia
| | - Yury Minenkov
- King Abdullah University of Science and Technology (KAUST), Kaust Catalysis Center (KCC); Thuwal 23955-6900 Saudi Arabia
| | - Edy Abou-Hamad
- King Abdullah University of Science and Technology (KAUST), Kaust Catalysis Center (KCC); Thuwal 23955-6900 Saudi Arabia
| | - Bilel Hamzaoui
- King Abdullah University of Science and Technology (KAUST), Kaust Catalysis Center (KCC); Thuwal 23955-6900 Saudi Arabia
| | - Baraa Werghi
- King Abdullah University of Science and Technology (KAUST), Kaust Catalysis Center (KCC); Thuwal 23955-6900 Saudi Arabia
| | - Dalaver H. Anjum
- King Abdullah University of Science and Technology (KAUST), Kaust Catalysis Center (KCC); Thuwal 23955-6900 Saudi Arabia
| | - Luigi Cavallo
- King Abdullah University of Science and Technology (KAUST), Kaust Catalysis Center (KCC); Thuwal 23955-6900 Saudi Arabia
| | - Kuo-Wei Huang
- King Abdullah University of Science and Technology (KAUST), Kaust Catalysis Center (KCC); Thuwal 23955-6900 Saudi Arabia
| | - Jean-Marie Basset
- King Abdullah University of Science and Technology (KAUST), Kaust Catalysis Center (KCC); Thuwal 23955-6900 Saudi Arabia
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8
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The chemistry of the carbon-transition metal double and triple bond: Annual survey covering the year 2013. Coord Chem Rev 2015. [DOI: 10.1016/j.ccr.2014.09.021] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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9
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Jiang YY, Zhang Q, Yu HZ, Fu Y. Mechanism of Aldehyde-Selective Wacker-Type Oxidation of Unbiased Alkenes with a Nitrite Co-Catalyst. ACS Catal 2015. [DOI: 10.1021/cs5018776] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yuan-Ye Jiang
- Collaborative Innovation Center of Chemistry for Energy Materials, CAS Key Laboratory of Urban Pollutant Conversion, Department of Chemistry, University of Science and Technology of China, Hefei 230026, China
| | - Qi Zhang
- Collaborative Innovation Center of Chemistry for Energy Materials, CAS Key Laboratory of Urban Pollutant Conversion, Department of Chemistry, University of Science and Technology of China, Hefei 230026, China
| | - Hai-Zhu Yu
- Department of Polymer Science and Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Huasheng Building, Beijing 100083, China
| | - Yao Fu
- Collaborative Innovation Center of Chemistry for Energy Materials, CAS Key Laboratory of Urban Pollutant Conversion, Department of Chemistry, University of Science and Technology of China, Hefei 230026, China
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10
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Cheng GJ, Zhang X, Chung LW, Xu L, Wu YD. Computational organic chemistry: bridging theory and experiment in establishing the mechanisms of chemical reactions. J Am Chem Soc 2015; 137:1706-25. [PMID: 25568962 DOI: 10.1021/ja5112749] [Citation(s) in RCA: 234] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Understanding the mechanisms of chemical reactions, especially catalysis, has been an important and active area of computational organic chemistry, and close collaborations between experimentalists and theorists represent a growing trend. This Perspective provides examples of such productive collaborations. The understanding of various reaction mechanisms and the insight gained from these studies are emphasized. The applications of various experimental techniques in elucidation of reaction details as well as the development of various computational techniques to meet the demand of emerging synthetic methods, e.g., C-H activation, organocatalysis, and single electron transfer, are presented along with some conventional developments of mechanistic aspects. Examples of applications are selected to demonstrate the advantages and limitations of these techniques. Some challenges in the mechanistic studies and predictions of reactions are also analyzed.
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Affiliation(s)
- Gui-Juan Cheng
- Lab of Computational Chemistry and Drug Design, Laboratory of Chemical Genomics, Peking University Shenzhen Graduate School , Shenzhen 518055, China
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11
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Poater A, Pump E, Vummaleti SVC, Cavallo L. The Right Computational Recipe for Olefin Metathesis with Ru-Based Catalysts: The Whole Mechanism of Ring-Closing Olefin Metathesis. J Chem Theory Comput 2014; 10:4442-8. [DOI: 10.1021/ct5003863] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Albert Poater
- Institut
de Química Computacional i Catàlisi and Departament
de Química, Universitat de Girona, Campus Montilivi, 17071 Girona, Catalonia, Spain
| | - Eva Pump
- Institute
for Chemistry and Technology of Materials, Graz University of Technology, Stremayrgasse 9, A 8010 Graz, Austria
- Kaust
Catalysis Center, Physical Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia
| | - Sai Vikrama Chaitanya Vummaleti
- Kaust
Catalysis Center, Physical Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia
| | - Luigi Cavallo
- Kaust
Catalysis Center, Physical Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia
- Dipartimento
di Chimica e Biologia, Università di Salerno, Via Ponte
don Melillo, I-84084 Fisciano (SA), Italy
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12
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Yang YF, Chung LW, Zhang X, Houk KN, Wu YD. Ligand-Controlled Reactivity, Selectivity, and Mechanism of Cationic Ruthenium-Catalyzed Hydrosilylations of Alkynes, Ketones, and Nitriles: A Theoretical Study. J Org Chem 2014; 79:8856-64. [DOI: 10.1021/jo501730n] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Yun-Fang Yang
- Lab
of Computational Chemistry and Drug Design, Laboratory of Chemical
Genomics, Peking University Shenzhen Graduate School, Shenzhen 518055, China
- Department
of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Lung Wa Chung
- Department
of Chemistry, South University of Science and Technology of China, Shenzhen 518055, China
| | - Xinhao Zhang
- Lab
of Computational Chemistry and Drug Design, Laboratory of Chemical
Genomics, Peking University Shenzhen Graduate School, Shenzhen 518055, China
| | - K. N. Houk
- Department
of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Yun-Dong Wu
- Lab
of Computational Chemistry and Drug Design, Laboratory of Chemical
Genomics, Peking University Shenzhen Graduate School, Shenzhen 518055, China
- College
of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
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13
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Yang YF, Cheng GJ, Liu P, Leow D, Sun TY, Chen P, Zhang X, Yu JQ, Wu YD, Houk KN. Palladium-catalyzed meta-selective C-H bond activation with a nitrile-containing template: computational study on mechanism and origins of selectivity. J Am Chem Soc 2013; 136:344-55. [PMID: 24313742 DOI: 10.1021/ja410485g] [Citation(s) in RCA: 288] [Impact Index Per Article: 26.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Density functional theory investigations have elucidated the mechanism and origins of meta-regioselectivity of Pd(II)-catalyzed C-H olefinations of toluene derivatives that employ a nitrile-containing template. The reaction proceeds through four major steps: C-H activation, alkene insertion, β-hydride elimination, and reductive elimination. The C-H activation step, which proceeds via a concerted metalation-deprotonation (CMD) pathway, is found to be the rate- and regioselectivity-determining step. For the crucial C-H activation, four possible active catalytic species-monomeric Pd(OAc)2, dimeric Pd2(OAc)4, heterodimeric PdAg(OAc)3, and trimeric Pd3(OAc)6-have been investigated. The computations indicated that the C-H activation with the nitrile-containing template occurs via a Pd-Ag heterodimeric transition state. The nitrile directing group coordinates with Ag while the Pd is placed adjacent to the meta-C-H bond in the transition state, leading to the observed high meta-selectivity. The Pd2(OAc)4 dimeric mechanism also leads to the meta-C-H activation product but with higher activation energies than the Pd-Ag heterodimeric mechanism. The Pd monomeric and trimeric mechanisms require much higher activation free energies and are predicted to give ortho products. Structural and distortion energy analysis of the transition states revealed significant effects of distortions of the template on mechanism and regioselectivity, which provided hints for further developments of new templates.
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Affiliation(s)
- Yun-Fang Yang
- Laboratory of Computational Chemistry and Drug Design and Laboratory of Chemical Genomics, Peking University Shenzhen Graduate School , Shenzhen 518055, China
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