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Pizzi A, Dhaka A, Beccaria R, Resnati G. Anion⋯anion self-assembly under the control of σ- and π-hole bonds. Chem Soc Rev 2024; 53:6654-6674. [PMID: 38867604 DOI: 10.1039/d3cs00479a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2024]
Abstract
The electrostatic attraction between charges of opposite signs and the repulsion between charges of the same sign are ubiquitous and influential phenomena in recognition and self-assembly processes. However, it has been recently revealed that specific attractive forces between ions with the same sign are relatively common. These forces can be strong enough to overcome the Coulomb repulsion between ions with the same sign, leading to the formation of stable anion⋯anion and cation⋯cation adducts. Hydroden bonds (HBs) are probably the best-known interaction that can effectively direct these counterintuitive assembly processes. In this review we discuss how σ-hole and π-hole bonds can break the paradigm of electrostatic repulsion between like-charges and effectively drive the self-assembly of anions into discrete as well as one-, two-, or three-dimensional adducts. σ-Hole and π-hole bonds are the attractive forces between regions of excess electron density in molecular entities (e.g., lone pairs or π bond orbitals) and regions of depleted electron density that are localized at the outer surface of bonded atoms opposite to the σ covalent bonds formed by atoms (σ-holes) and above and below the planar portions of molecular entities (π-holes). σ- and π-holes can be present on many different elements of the p and d block of the periodic table and the self-assembly processes driven by their presence can thus involve a wide diversity of mono- and di-anions. The formed homomeric and heteromeric adducts are typically stable in the solid phase and in polar solvents but metastable or unstable in the gas phase. The pivotal role of σ- and π-hole bonds in controlling anion⋯anion self-assembly is described in key biopharmacological systems and in molecular materials endowed with useful functional properties.
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Affiliation(s)
- Andrea Pizzi
- NFMLab, Department of Chemistry, Materials, Chemical Engineering "Giulio Natta", Politecnico di Milano, via Mancinelli 7, I-20131 Milano, Italy.
| | - Arun Dhaka
- NFMLab, Department of Chemistry, Materials, Chemical Engineering "Giulio Natta", Politecnico di Milano, via Mancinelli 7, I-20131 Milano, Italy.
| | - Roberta Beccaria
- NFMLab, Department of Chemistry, Materials, Chemical Engineering "Giulio Natta", Politecnico di Milano, via Mancinelli 7, I-20131 Milano, Italy.
| | - Giuseppe Resnati
- NFMLab, Department of Chemistry, Materials, Chemical Engineering "Giulio Natta", Politecnico di Milano, via Mancinelli 7, I-20131 Milano, Italy.
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A novel mixed halide co-based hybrid compound: crystal structure, Hirshfeld surface analysis and thermal behavior. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2023. [DOI: 10.1007/s13738-022-02681-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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Derbel MA, Jlassi R, Roisnel T, Badraoui R, Krayem N, Al-Ghulikah H, Rekik W, Naïli H. The effect of partial substitution of chloride by bromide in the 0-D hybrid material (C 4H 12N 2)[CuCl 4]·2H 2O: Structural, vibrational, thermal, in silico and biological characterizations. J COORD CHEM 2022. [DOI: 10.1080/00958972.2022.2157722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Marwa Abid Derbel
- Laboratoire Physico-Chimie de l’Etat Solide, Département de Chimie, Faculté des Sciences de Sfax, B.P. 1171, Université de Sfax, Sfax, Tunisia
| | - Raja Jlassi
- Laboratoire Physico-Chimie de l’Etat Solide, Département de Chimie, Faculté des Sciences de Sfax, B.P. 1171, Université de Sfax, Sfax, Tunisia
| | - Thierry Roisnel
- Univ Rennes, CNRS, ISCR (Institut des Sciences Chimiques de Rennes), UMR6226, Rennes, France
| | - Riadh Badraoui
- Laboratory of General Biology, Department of Biology, University of Ha’il, Ha’il, Saudi Arabia
- Section of Histology-Cytology, Medicine Faculty of Tunis, University of Tunis El Manar, La Rabta-Tunis, Tunisia
| | - Najeh Krayem
- Laboratory of Biochemistry and Engineering of Lipases, University of Sfax, National School of Engineering of Sfax (ENIS), Sfax, Tunisia
| | - Hanan Al-Ghulikah
- Department of Chemistry, College of Science, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia
| | - Walid Rekik
- Laboratoire Physico-Chimie de l’Etat Solide, Département de Chimie, Faculté des Sciences de Sfax, B.P. 1171, Université de Sfax, Sfax, Tunisia
| | - Houcine Naïli
- Laboratoire Physico-Chimie de l’Etat Solide, Département de Chimie, Faculté des Sciences de Sfax, B.P. 1171, Université de Sfax, Sfax, Tunisia
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Goudarziafshar H, Yousefi S, Abbasi Tyula Y, Dušek M, Eigner V. Template synthesis, DNA binding, antimicrobial activity, Hirshfeld surface analysis, and 1D helical supramolecular structure of a novel binuclear copper(ii) Schiff base complex. RSC Adv 2022; 12:13580-13592. [PMID: 35530396 PMCID: PMC9069724 DOI: 10.1039/d2ra00719c] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2022] [Accepted: 04/20/2022] [Indexed: 01/27/2023] Open
Abstract
A new binuclear copper(ii) Schiff base complex [Cu2 L2 - (NO3)2]·2CH3OH (1) [L = 2,6-bis((E)-(p-tolylimino)methyl)-4-methoxyphenol] was synthesized using a template method in which the tridentate N2O Schiff base ligand was derived from [1 + 2] condensation of 2,6-diformyl-4-methoxyphenol and p-methyl aniline in the presence of copper(ii) ions as the template agent. The X-ray diffraction analyses revealed that this complex crystallizes in the monoclinic system with space group P21/n. The most remarkable structural feature of 1 is that it contains two types of 1D right-handed helical chains. The molecules are linked by intermolecular hydrogen bonds and π⋯π interactions, then a 3D supramolecular network was constructed. Moreover, the intermolecular interactions on the crystal packing of 1 have been further studied using Hirshfeld surface analysis and corresponding 2D fingerprint plots. Binding interaction of this complex with calf thymus DNA (CT-DNA) has been investigated using absorption and emission studies, viscosity experiments and circular dichroism studies. Complex 1 shows significant binding to the DNA. The results of fluorescence spectroscopy and UV absorption spectroscopy, CD spectroscopy and viscosity indicated that this complex interacted with CT-DNA in a groove binding mode where the binding constant was 1.3 ± 0.2 × 104 L mol-1. Our fluorimeteric study showed that the reaction between 1 and CT-DNA was exothermic (ΔH = 59.6 kJ mol-1; ΔS = 268.79 J mol-1 K-1). Antibacterial activities of the complex were screened by the disc diffusion method against three Gram-positive bacteria (Staphylococcus aureus ATCC 25923, Enterococcus faecalis ATCC 23212 and S. epidermidis ATCC 34384), and three Gram-negative bacteria (Escherichia coli ATCC 25922, Pseudomonas aeruginosa ATCC 27853 and Klebsiella pneumonia ATCC 70063). The results indicated that this complex demonstrated acceptable antibacterial activities.
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Affiliation(s)
- Hamid Goudarziafshar
- Department of Chemical Engineering, Hamedan University of Technology Hamedan Iran
| | - Somaieh Yousefi
- Department of Chemistry, Faculty of Science, Ilam University P.O. Box 69315516 Ilam Iran
| | - Yunes Abbasi Tyula
- Department of Chemistry, Faculty of Science, Ilam University P.O. Box 69315516 Ilam Iran
| | - Michal Dušek
- Institute of Physics of the Czech Academy of Sciences Na Slovance 2, 182 21 Praha 8 Czech Republic
| | - Václav Eigner
- Institute of Physics of the Czech Academy of Sciences Na Slovance 2, 182 21 Praha 8 Czech Republic
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Msalmi R, Elleuch S, Hamdi B, Abd El-Fattah W, Ben Hamadi N, Naïli H. Organically tuned white-light emission from two zero-dimensional Cd-based hybrids. RSC Adv 2022; 12:10431-10442. [PMID: 35425012 PMCID: PMC8982363 DOI: 10.1039/d1ra08953f] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Accepted: 03/10/2022] [Indexed: 12/25/2022] Open
Abstract
In this work, we report two zero-dimensional Cd-based hybrid compounds, denoted CdACP and CdODA, where the Cd atoms adopt tetrahedral geometry. The optical analysis reveals that these materials are classified as wide-gap semi-conductors which makes them suitable for optoelectronic applications. The photoluminescence analysis proves the wavelength dependent white-light emission behavior of the investigated materials. The structural-optical property studies show that, thanks to the heavy halide effect, the CdACP exhibits both fluorescence and room temperature phosphorescence through harvesting triplet states. Meanwhile, in contrast to CdACP, the white light emission from CdODA is purely fluorescence in nature. In fact, within CdODA, both C-H⋯π and N-H⋯N interactions facilitate the intramolecular proton transfer (ESIPT) between the different cations which leads to ultra-fast fluorescence through excited state ESIPT. Under sub-gap excitations, the inorganic sub-lattice is responsible for the blue-green emission through the STE mechanism, while the organic cations contribute by an intense red emission.
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Affiliation(s)
- Rawia Msalmi
- Laboratory of Physico Chemistry of the Solid State, Department of Chemistry, Faculty of Sciences of Sfax, Sfax University Sfax Tunisia
| | - Slim Elleuch
- Laboratory of Applied Physics, Department of Physics, Faculty of Sciences of Sfax, Sfax University Sfax Tunisia
| | - Besma Hamdi
- Laboratory of Materials Science and Environment, Department of Chemistry, Faculty of Sciences of Sfax, Sfax University Sfax Tunisia
| | - Wesam Abd El-Fattah
- Chemistry Department, College of Science, IMSIU (Imam Mohammad Ibn Saud Islamic University) Riyadh 11623 kingdom of Saudi Arabia
- Department of Chemistry, Faculty of Science, Port-Said University Port-Said Egypt
| | - Naoufel Ben Hamadi
- Chemistry Department, College of Science, IMSIU (Imam Mohammad Ibn Saud Islamic University) Riyadh 11623 kingdom of Saudi Arabia
- Laboratory of Heterocyclic Chemistry, Natural Products and Reactivity (LR11ES39), Team: Medicinal Chemistry and Natural Products, Faculty of Science of Monastir, University of Monastir Avenue of Environment 5019 Monastir Tunisia
| | - Houcine Naïli
- Laboratory of Physico Chemistry of the Solid State, Department of Chemistry, Faculty of Sciences of Sfax, Sfax University Sfax Tunisia
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Insights into interactions of cellulose acetate and metal ions (Zn2+, Cu2+, and Ag+) in aqueous media using DFT study. COMPUT THEOR CHEM 2021. [DOI: 10.1016/j.comptc.2021.113322] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Spectroscopic, Structural and Thermal Properties of Three New Metal Nitrates Templated by DABCO: (C6H14N2)[MII(H2O)6](NO3)4 with MII: Mn, Ni and Zn. J Inorg Organomet Polym Mater 2020. [DOI: 10.1007/s10904-020-01495-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Moghdad I, Mbarek A, Costantino F, Nazzareni S, Naïli H. Hybrid MII-organic-diphosphate hydrates (MII = Mn, Ni and Zn): Structural characterization, hirshfeld surface analysis and antitumoral activity. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127326] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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Hfidhi N, bkhairia I, Atoui D, Boonmak J, Nasri M, Ben Salem R, Youngme S, Naïli H. Catalytic and biological valorization of a supramolecular mononuclear copper complex based 4-aminopyridine. Appl Organomet Chem 2019. [DOI: 10.1002/aoc.4793] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
- Nabil Hfidhi
- Laboratoire Physico-chimie de l'Etat Solide, Département de Chimie, Faculté des Sciences de Sfax; Université de Sfax; B.P. 1171 3000 Sfax Tunisia
| | - Intidhar bkhairia
- Laboratory of Enzyme Engineering and Microbiology; University of Sfax, National School of Engineering of Sfax (ENIS); Tunisia
| | - Dhieb Atoui
- Organic Chemistry Laboratory (LR17/ES08); University of Sfax, Faculty of Sciences of Sfax; Tunisia
| | - Jaursup Boonmak
- Materials Chemistry Research Center, Department of Chemistry and Center of Excellence for Innovation in Chemistry, Faculty of Science; Khon Kaen University; Khon Kaen 40002 Thailand
| | - Moncef Nasri
- Laboratory of Enzyme Engineering and Microbiology; University of Sfax, National School of Engineering of Sfax (ENIS); Tunisia
| | - Ridha Ben Salem
- Organic Chemistry Laboratory (LR17/ES08); University of Sfax, Faculty of Sciences of Sfax; Tunisia
| | - Sujittra Youngme
- Materials Chemistry Research Center, Department of Chemistry and Center of Excellence for Innovation in Chemistry, Faculty of Science; Khon Kaen University; Khon Kaen 40002 Thailand
| | - Houcine Naïli
- Laboratoire Physico-chimie de l'Etat Solide, Département de Chimie, Faculté des Sciences de Sfax; Université de Sfax; B.P. 1171 3000 Sfax Tunisia
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