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Sukumar S, Rahmanyar Z, El Jurf HQ, Akil WS, Hussain J, Martin FE, Ekanayake K, Martinez E. Mapping the oral resistome: a systematic review. J Med Microbiol 2024; 73:001866. [PMID: 39133536 PMCID: PMC11318793 DOI: 10.1099/jmm.0.001866] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Accepted: 07/17/2024] [Indexed: 08/13/2024] Open
Abstract
Studying individual ecological niches within the oral cavity is a logical first step to understanding the distribution of antimicrobial resistance genes (ARGs); however, it is not representative of the whole oral resistome. The aim of our systematic review was to provide a map of the oral resistome by reviewing the composition of individual niches. A total of 580 papers were retrieved from a search of all English language publications investigating the presence of oral ARGs in five electronic databases between January 2015 and August 2023. Fifteen studies [10 PCR and 5 next-generation sequencing (NGS)] were included in this review. The heterogeneity of methods precluded meta-analysis. ARGs are present throughout the oral cavity with 158 unique ARGs identified across 6 locations - supra and sub-gingival biofilm, mucosa, oropharynx, root canal system (RCS) and saliva. The supragingival biofilm had the highest resistome richness, while the RCS had the least. Tetracycline was the dominant antimicrobial resistance (AMR) class found. Three core genes were identified - tet(M), tet(O) and ermB.This review highlights the necessity of NGS studies to comprehensively characterize the oral resistome in its entirety. This is the logical foundation for future 'omics studies to truly understand the scope of the resistome and its contribution to AMR.
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Affiliation(s)
- Smitha Sukumar
- Faculty of Medicine and Health, The University of Sydney, Sydney, New South Wales, 2000, Australia
| | - Zalmay Rahmanyar
- Faculty of Medicine and Health, The University of Sydney, Sydney, New South Wales, 2000, Australia
| | - Hagaar Q. El Jurf
- Faculty of Medicine and Health, The University of Sydney, Sydney, New South Wales, 2000, Australia
| | - William S. Akil
- Faculty of Medicine and Health, The University of Sydney, Sydney, New South Wales, 2000, Australia
| | - Jafar Hussain
- Faculty of Medicine and Health, The University of Sydney, Sydney, New South Wales, 2000, Australia
| | - F. Elizabeth Martin
- Faculty of Medicine and Health, The University of Sydney, Sydney, New South Wales, 2000, Australia
| | - Kanchana Ekanayake
- Faculty of Medicine and Health, The University of Sydney, Sydney, New South Wales, 2000, Australia
| | - Elena Martinez
- Faculty of Medicine and Health, The University of Sydney, Sydney, New South Wales, 2000, Australia
- Institute of Clinical Pathology and Medical Research, Westmead Hospital, Westmead, New South Wales, 2145, Australia
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Häsler B, Bazeyo W, Byrne AW, Hernandez-Jover M, More SJ, Rüegg SR, Schwarzmann O, Wilson J, Yawe A. Reflecting on One Health in Action During the COVID-19 Response. Front Vet Sci 2020; 7:578649. [PMID: 33195585 PMCID: PMC7661772 DOI: 10.3389/fvets.2020.578649] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Accepted: 09/10/2020] [Indexed: 11/26/2022] Open
Abstract
The COVID-19 pandemic, a singular disruptive event in recent human history, has required rapid, innovative, coordinated and collaborative approaches to manage and ameliorate its worst impacts. However, the threat remains, and learning from initial efforts may benefit the response management in the future. One Health approaches to managing health challenges through multi-stakeholder engagement are underscored by an enabling environment. Here we describe three case studies from state (New South Wales, Australia), national (Ireland), and international (sub-Saharan Africa) scales which illustrate different aspects of One Health in action in response to the COVID-19 pandemic. In Ireland, a One Health team was assembled to help parameterise complex mathematical and resource models. In New South Wales, state authorities engaged collaboratively with animal health veterinarians and epidemiologists to leverage disease outbreak knowledge, expertise and technical and support structures for application to the COVID-19 emergency. The African One Health University Network linked members from health institutions and universities from eight countries to provide a virtual platform knowledge exchange on COVID-19 to support the response. Themes common to successful experiences included a shared resource base, interdisciplinary engagement, communication network strategies, and looking global to address local need. The One Health approaches used, particularly shared responsibility and knowledge integration, are benefiting the management of this pandemic and future One Health global challenges.
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Affiliation(s)
- Barbara Häsler
- Department of Pathobiology and Population Sciences, Royal Veterinary College, Veterinary Epidemiology Economics and Public Health Group, Hatfield, United Kingdom
| | - William Bazeyo
- Africa One Health University Network (AFROHUN), Makerere University, Kampala, Uganda
| | - Andrew W. Byrne
- One-Health Scientific Support Unit, Department of Agriculture, Food, and The Marine, Government of Ireland, Celbridge, Ireland
| | - Marta Hernandez-Jover
- Faculty of Science, School of Animal and Veterinary Sciences, Charles Sturt University, Wagga Wagga, NSW, Australia
- Graham Centre for Agricultural Innovation (NSW Department of Primary Industries and Charles Sturt University), Wagga Wagga, NSW, Australia
| | - Simon J. More
- Centre for Veterinary Epidemiology and Risk Analysis, School of Veterinary Medicine, University College Dublin (UCD), Dublin, Ireland
| | - Simon R. Rüegg
- Section of Epidemiology, Vetsuisse Faculty, University of Zurich, Zurich, Switzerland
| | - Ofir Schwarzmann
- Biosecurity and Food Safety, New South Wales Department of Primary Industries, Orange, NSW, Australia
| | - Jeff Wilson
- Novometrix Research Inc., Moffat, ON, Canada
| | - Agnes Yawe
- Africa One Health University Network (AFROHUN), Makerere University, Kampala, Uganda
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