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Green Production of Cladribine by Using Immobilized 2'-Deoxyribosyltransferase from Lactobacillus delbrueckii Stabilized through a Double Covalent/Entrapment Technology. Biomolecules 2021; 11:biom11050657. [PMID: 33947162 PMCID: PMC8146660 DOI: 10.3390/biom11050657] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Revised: 04/20/2021] [Accepted: 04/23/2021] [Indexed: 12/12/2022] Open
Abstract
Nowadays, enzyme-mediated processes offer an eco-friendly and efficient alternative to the traditional multistep and environmentally harmful chemical processes. Herein we report the enzymatic synthesis of cladribine by a novel 2'-deoxyribosyltransferase (NDT)-based combined biocatalyst. To this end, Lactobacillus delbrueckii NDT (LdNDT) was successfully immobilized through a two-step immobilization methodology, including a covalent immobilization onto glutaraldehyde-activated biomimetic silica nanoparticles followed by biocatalyst entrapment in calcium alginate. The resulting immobilized derivative, SiGPEI 25000-LdNDT-Alg, displayed 98% retained activity and was shown to be active and stable in a broad range of pH (5-9) and temperature (30-60 °C), but also displayed an extremely high reusability (up to 2100 reuses without negligible loss of activity) in the enzymatic production of cladribine. Finally, as a proof of concept, SiGPEI 25000-LdNDT-Alg was successfully employed in the green production of cladribine at mg scale.
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Del Arco J, Acosta J, Fernández-Lucas J. New trends in the biocatalytic production of nucleosidic active pharmaceutical ingredients using 2'-deoxyribosyltransferases. Biotechnol Adv 2021; 51:107701. [PMID: 33515673 DOI: 10.1016/j.biotechadv.2021.107701] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2020] [Revised: 12/27/2020] [Accepted: 01/21/2021] [Indexed: 12/16/2022]
Abstract
Nowadays, pharmaceutical industry demands competitive and eco-friendly processes for active pharmaceutical ingredients (APIs) manufacturing. In this context, enzyme and whole-cell mediated processes offer an efficient, sustainable and cost-effective alternative to the traditional multi-step and environmentally-harmful chemical processes. Particularly, 2'-deoxyribosyltransferases (NDTs) have emerged as a novel synthetic alternative, not only to chemical but also to other enzyme-mediated synthetic processes. This review describes recent findings in the development and scaling up of NDTs as industrial biocatalysts, including the most relevant and recent examples of single enzymatic steps, multienzyme cascades, chemo-enzymatic approaches, and engineered biocatalysts. Finally, to reflect the inventive and innovative steps of NDT-mediated bioprocesses, a detailed analysis of recently granted patents, with specific focus on industrial synthesis of nucleoside-based APIs, is hereunder presented.
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Affiliation(s)
- Jon Del Arco
- Applied Biotechnology Group, Universidad Europea de Madrid, Urbanización El Bosque, E-28670 Villaviciosa de Odón, Madrid, Spain
| | - Javier Acosta
- Applied Biotechnology Group, Universidad Europea de Madrid, Urbanización El Bosque, E-28670 Villaviciosa de Odón, Madrid, Spain
| | - Jesús Fernández-Lucas
- Applied Biotechnology Group, Universidad Europea de Madrid, Urbanización El Bosque, E-28670 Villaviciosa de Odón, Madrid, Spain; Grupo de Investigación en Ciencias Naturales y Exactas, GICNEX, Universidad de la Costa, CUC, Calle 58 # 55 - 66, Barranquilla, Colombia.
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Méndez MB, Trelles JA, Rivero CW. Decitabine bioproduction using a biocatalyst with improved stability by adding nanocomposites. AMB Express 2020; 10:173. [PMID: 32990767 PMCID: PMC7524979 DOI: 10.1186/s13568-020-01109-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2020] [Accepted: 09/09/2020] [Indexed: 01/05/2023] Open
Abstract
A novel IDA-LaNDT derivative was able to reach the highest productivity in the biosynthesis of a well-known antitumoral agent called decitabine. However, the combination of two simple and inexpensive techniques such as ionic absorption and gel entrapment with the incorporation of a bionanocomposite such as bentonite significantly improved the stability of this biocatalyst. These modifications allowed the enhancement of storage stability (for at least 18 months), reusability (400 h of successive batches without significant loss of its initial activity), and thermal and solvent stability with respect to the non-entrapped derivative. Moreover, reaction conditions were optimized by increasing the solubility of 5-aza by dilution with dimethylsulfoxide. Therefore, a scale-up of the bioprocess was assayed using the developed biocatalyst, obtaining 221 mg/L·h of DAC. Finally, green parameters were calculated using the nanostabilized biocatalyst, whose results indicated that it was able to biosynthesize DAC by a smooth, cheap, and environmentally friendly methodology.![]()
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Rivero CW, De Benedetti EC, Sambeth J, Trelles JA. Biotransformation of cladribine by a nanostabilized extremophilic biocatalyst. J Biotechnol 2020; 323:166-173. [PMID: 32841608 DOI: 10.1016/j.jbiotec.2020.08.012] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2020] [Revised: 08/01/2020] [Accepted: 08/19/2020] [Indexed: 12/19/2022]
Abstract
Cladribine (2-chloro-2'-deoxy-β-d-adenosine) is a 2'-deoxyadenosine analogue, approved by the FDA for the treatment of hairy cell leukemia and more recently has been proved for therapeutic against many autoimmune diseases as multiple sclerosis. The biosynthesis of this compound using Thermomonospora alba CECT 3324 as biocatalyst is herein reported. This thermophilic microorganism was successfully entrapped in polyacrylamide gel supplemented with nanoclays such as bentonite. The immobilized biocatalyst (T. alba-Ac-Bent 1.00 %), was able to biosynthesize cladribine with a conversion of 89 % in 1 h of reaction and retains its activity for more than 270 reuses without significantly activity loss, showing better operational stability and mechanical properties than the natural matrix. A microscale assay using the developed system, could allow the production of at least 181 mg of cladribine in successive bioprocesses.
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Affiliation(s)
- Cintia W Rivero
- Laboratory of Sustainable Biotechnology (LIBioS), National University of Quilmes, Roque Sáenz Peña 352, Bernal, B1876BXD, Argentina; National Scientific and Technical Research Council (CONICET), Godoy Cruz 2290, CABA, C1425FQB, Argentina
| | - Eliana C De Benedetti
- Laboratory of Sustainable Biotechnology (LIBioS), National University of Quilmes, Roque Sáenz Peña 352, Bernal, B1876BXD, Argentina; National Scientific and Technical Research Council (CONICET), Godoy Cruz 2290, CABA, C1425FQB, Argentina
| | - Jorge Sambeth
- National Scientific and Technical Research Council (CONICET), Godoy Cruz 2290, CABA, C1425FQB, Argentina; Center for Research and Development in Applied Sciences "Dr. Jorge J. Ronco", National University of La Plata, La Plata, Argentina
| | - Jorge A Trelles
- Laboratory of Sustainable Biotechnology (LIBioS), National University of Quilmes, Roque Sáenz Peña 352, Bernal, B1876BXD, Argentina; National Scientific and Technical Research Council (CONICET), Godoy Cruz 2290, CABA, C1425FQB, Argentina.
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5
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Hyperstabilization of a thermophile bacterial laccase and its application for industrial dyes degradation. 3 Biotech 2020; 10:288. [PMID: 32550107 DOI: 10.1007/s13205-020-02277-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2020] [Accepted: 05/25/2020] [Indexed: 12/17/2022] Open
Abstract
In the present study, a novel extracellular laccase isolated from Geobacillus stearothermophilus ATCC 10149 was entrapped in a bionanocomposite matrix consisting of copper alginate (Cu-alginate) supplemented with the nanoclay bentonite. After optimization, this nanobiocatalyst was able to degrade up to 90% of Remazol Brilliant Blue R (RBBR) without the addition of redox mediators and retained 70% of its initial activity for at least 1440 h, equivalent to more than 288 uses. The incorporation of nanoclay allowed alginate beads to be used in alkaline pH and strengthened its mechanical properties. Besides, this thermophilic laccase was able to decolorize other structurally different synthetic dyes such as Methyl Orange, Malachite Green and Indigo Carmine. These preliminary results suggested that the nanobiocatalyst could be a suitable option for dye decolorization and be further developed for large scale bioremediation of toxic dyes.
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Biotransformation of cladribine by a magnetic immobilizated biocatalyst of Lactobacillus animalis. Biotechnol Lett 2020; 42:1229-1236. [PMID: 32107669 DOI: 10.1007/s10529-020-02845-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Accepted: 02/19/2020] [Indexed: 10/24/2022]
Abstract
A stable biocatalyst with magnetic properties based on immobilized Lactobacillus animalis ATCC 35,046 to obtain 2-chloroadenine-2'-deoxyriboside, known as cladribine, is reported for the first time. This nucleoside analogue is an antitumor agent used in the treatment of a wide variety of types of leukemia. In this study, an eco-compatible and alternative bioprocess to obtain cladribine was developed. Product conversion was close to 90% at 2 h in optimized nonconventional reaction media. The microscale biosynthesis of the compound of interest afforded a total productivity close to 370 mg/L/h in the presence of DMSO, and it was stable at least for 30 days in storage conditions.
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Effect of a polyphenol-rich plant matrix on colonic digestion and plasma antioxidant capacity in a porcine model. J Funct Foods 2019. [DOI: 10.1016/j.jff.2019.04.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
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Sarquiz A, Rivero CW, Britos CN, Trelles JA. Biotransformation of 5´-O-β-d-galactosyl-floxuridine by immobilized β-galactosidase from Kocuria rhizophila. J Fluor Chem 2018. [DOI: 10.1016/j.jfluchem.2018.07.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Britos CN, Gianolini JE, Portillo H, Trelles JA. Biodegradation of industrial dyes by a solvent, metal and surfactant-stable extracellular bacterial laccase. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2018. [DOI: 10.1016/j.bcab.2018.03.015] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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Méndez MB, Rivero CW, López-Gallego F, Guisán JM, Trelles JA. Development of a high efficient biocatalyst by oriented covalent immobilization of a novel recombinant 2′- N -deoxyribosyltransferase from Lactobacillus animalis. J Biotechnol 2018; 270:39-43. [DOI: 10.1016/j.jbiotec.2018.01.011] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2017] [Revised: 12/28/2017] [Accepted: 01/15/2018] [Indexed: 02/01/2023]
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Ramírez-Tapias YA, Lapasset Laumann AS, Britos CN, Rivero CW, Trelles JA. Saccharification of citrus wastes by immobilized polygalacturonase in an improved alginate matrix. 3 Biotech 2017; 7:380. [PMID: 29109925 PMCID: PMC5658297 DOI: 10.1007/s13205-017-1010-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2017] [Accepted: 10/13/2017] [Indexed: 12/24/2022] Open
Abstract
Enzyme immobilization using hydrogels is a low-cost and effective system for the degradation of bulk pectin derived from orange industry residues. Polygalacturonases obtained from four different bacterial strains of Streptomyces genus were immobilized in alginate gel and assayed for pectin hydrolysis. The enzyme from Streptomyces halstedii ATCC 10897 proved to be superior and more stable within the alginate matrix. Furthermore, a new strategy to improve alginate bead stability using a mixture of calcium and strontium is reported; this technique allowed enhancing the mechanical properties by combining different amounts of these cations for ionotropic gelation. The developed biocatalyst showed maximum hydrolysis at 2 h, generating 1.54 mg/mL of reducing sugars and decreasing the viscosity of polygalacturonic acid by 98.9%. Reusability up to 29 successive reactions (58 h) demonstrated a very stable performance. The heterogeneous biocatalyst was used in the enzymatic saccharification of orange peel albedo (2.23 mg/mL) for adding value to this agro-waste by industrial exploitation.
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Affiliation(s)
- Yuly A. Ramírez-Tapias
- Laboratory of Sustainable Biotechnology (LIBioS), National University of Quilmes, Roque Sáenz Peña 352, B1876BXD Bernal, Argentina
- National Scientific and Technical Research Council (CONICET), Godoy Cruz 2290, C1425FQB Cuidad Autónoma de Buenos Aires (CABA), Buenos Aires Argentina
| | - Aldana S. Lapasset Laumann
- Laboratory of Sustainable Biotechnology (LIBioS), National University of Quilmes, Roque Sáenz Peña 352, B1876BXD Bernal, Argentina
| | - Claudia N. Britos
- Laboratory of Sustainable Biotechnology (LIBioS), National University of Quilmes, Roque Sáenz Peña 352, B1876BXD Bernal, Argentina
| | - Cintia W. Rivero
- Laboratory of Sustainable Biotechnology (LIBioS), National University of Quilmes, Roque Sáenz Peña 352, B1876BXD Bernal, Argentina
- National Scientific and Technical Research Council (CONICET), Godoy Cruz 2290, C1425FQB Cuidad Autónoma de Buenos Aires (CABA), Buenos Aires Argentina
| | - Jorge A. Trelles
- Laboratory of Sustainable Biotechnology (LIBioS), National University of Quilmes, Roque Sáenz Peña 352, B1876BXD Bernal, Argentina
- National Scientific and Technical Research Council (CONICET), Godoy Cruz 2290, C1425FQB Cuidad Autónoma de Buenos Aires (CABA), Buenos Aires Argentina
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Rivero CW, De Benedetti EC, Gallego FL, Pessela BC, Guisán JM, Trelles JA. Biosynthesis of an antiviral compound using a stabilized phosphopentomutase by multipoint covalent immobilization. J Biotechnol 2017; 249:34-41. [DOI: 10.1016/j.jbiotec.2017.03.027] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2016] [Revised: 03/21/2017] [Accepted: 03/23/2017] [Indexed: 10/19/2022]
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Ferraboschi P, Ciceri S, Grisenti P. Synthesis of Antitumor Fluorinated Pyrimidine Nucleosides. ORG PREP PROCED INT 2017. [DOI: 10.1080/00304948.2017.1290994] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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15
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Gai Q, Jiao J, Luo M, Wang W, Yao L, Fu Y. Deacetylation biocatalysis and elicitation by immobilized Penicillium canescens in Astragalus membranaceus hairy root cultures: towards the enhanced and sustainable production of astragaloside IV. PLANT BIOTECHNOLOGY JOURNAL 2017; 15:297-305. [PMID: 27518481 PMCID: PMC5316919 DOI: 10.1111/pbi.12612] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2016] [Revised: 07/27/2016] [Accepted: 08/09/2016] [Indexed: 05/24/2023]
Abstract
A novel biotechnology approach by combining deacetylation biocatalysis with elicitation of immobilized Penicillium canescens (IPC) in Astragalus membranaceus hairy root cultures (AMHRCs) was proposed for the elevated production of astragaloside IV (AG IV). The highest AG IV accumulation was achieved in 36-day-old AMHRCs co-cultured with IPC for 60 h, which resulted in the enhanced production of AG IV by 14.59-fold in comparison with that in control (0.193 ± 0.007 mg/g DW). Meanwhile, AG IV precursors were almost transformed to AG IV by IPC deacetylation. Moreover, expression of genes involved in AG IV biosynthetic pathway was significantly up-regulated in response to IPC elicitation. Also, FTIR and SEM showed that cell wall lignification was enhanced following IPC treatment and root surface was likely to be IPC deacetylation site. Overall, dual roles of IPC (biocatalyst and elicitor) offered an effective and sustainable way for the mass production of AG IV in AMHRCs.
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Affiliation(s)
- Qing‐Yan Gai
- Key Laboratory of Forest Plant EcologyMinistry of EducationNortheast Forestry UniversityHarbinChina
- Engineering Research Center of Forest Bio‐PreparationMinistry of EducationNortheast Forestry UniversityHarbinChina
- Collaborative Innovation Center for Development and Utilization of Forest ResourcesHarbinHeilongjiangChina
| | - Jiao Jiao
- Key Laboratory of Forest Plant EcologyMinistry of EducationNortheast Forestry UniversityHarbinChina
- Engineering Research Center of Forest Bio‐PreparationMinistry of EducationNortheast Forestry UniversityHarbinChina
- Collaborative Innovation Center for Development and Utilization of Forest ResourcesHarbinHeilongjiangChina
| | - Meng Luo
- Key Laboratory of Forest Plant EcologyMinistry of EducationNortheast Forestry UniversityHarbinChina
- Engineering Research Center of Forest Bio‐PreparationMinistry of EducationNortheast Forestry UniversityHarbinChina
- Collaborative Innovation Center for Development and Utilization of Forest ResourcesHarbinHeilongjiangChina
| | - Wei Wang
- Key Laboratory of Forest Plant EcologyMinistry of EducationNortheast Forestry UniversityHarbinChina
- Engineering Research Center of Forest Bio‐PreparationMinistry of EducationNortheast Forestry UniversityHarbinChina
- Collaborative Innovation Center for Development and Utilization of Forest ResourcesHarbinHeilongjiangChina
| | - Li‐Ping Yao
- Key Laboratory of Forest Plant EcologyMinistry of EducationNortheast Forestry UniversityHarbinChina
- Engineering Research Center of Forest Bio‐PreparationMinistry of EducationNortheast Forestry UniversityHarbinChina
- Collaborative Innovation Center for Development and Utilization of Forest ResourcesHarbinHeilongjiangChina
| | - Yu‐Jie Fu
- Key Laboratory of Forest Plant EcologyMinistry of EducationNortheast Forestry UniversityHarbinChina
- Engineering Research Center of Forest Bio‐PreparationMinistry of EducationNortheast Forestry UniversityHarbinChina
- Collaborative Innovation Center for Development and Utilization of Forest ResourcesHarbinHeilongjiangChina
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Lapponi MJ, Rivero CW, Zinni MA, Britos CN, Trelles JA. New developments in nucleoside analogues biosynthesis: A review. ACTA ACUST UNITED AC 2016. [DOI: 10.1016/j.molcatb.2016.08.015] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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18
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Biotransformation of halogenated nucleosides by immobilized Lactobacillus animalis 2′- N -deoxyribosyltransferase. J Fluor Chem 2016. [DOI: 10.1016/j.jfluchem.2016.04.012] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Development of a nanostabilized biocatalyst using an extremophilic microorganism for ribavirin biosynthesis. ACTA ACUST UNITED AC 2015. [DOI: 10.1016/j.molcatb.2015.08.006] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Rivero CW, De Benedetti EC, Lozano ME, Trelles JA. Bioproduction of ribavirin by green microbial biotransformation. Process Biochem 2015; 50:935-940. [PMID: 32288593 PMCID: PMC7108421 DOI: 10.1016/j.procbio.2015.03.015] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/29/2015] [Accepted: 03/16/2015] [Indexed: 11/24/2022]
Abstract
Biotransformation of ribavirin was performed by E. coli ATCC 12407, reaching yields of 86%. This mesophile microorganism was successfully stabilized in agarose and polyacrylamide. Biocatalyst immobilized in agarose could be reused during 270 h without activity loss. Packed-bed bioreactor prototype was able to produce 95 mg ribavirin.
Ribavirin is an antiviral compound widely used in Hepatitis C Virus therapy. Biotransformation of this nucleoside analogue using Escherichia coli ATCC 12407 as biocatalyst is herein reported. Reaction parameters such as microorganism amounts, substrate ratio and temperature were optimized reaching conversion yields of 86%. Biocatalyst stability was enhanced by immobilization in agarose matrix. This immobilized biocatalyst was able to be reused for more than 270 h and could be stored during more than 4 months without activity loss. Batch and packed-bed reactors based on a stabilized biocatalyst were assayed for bioprocess scale-up. A continuous sustainable bioprocess was evaluated using a prototype packed-bed reactor, which allowed to produce 95 mg of ribavirin. Finally, in this work an efficient green bioprocess for ribavirin bioproduction using a stabilized biocatalyst was developed.
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Affiliation(s)
- Cintia W Rivero
- Laboratorio de Investigaciones en Biotecnología Sustentable (LIBioS), Universidad Nacional de Quilmes, Roque Sáenz Peña 352, Bernal (B1876BXD), Argentina
| | - Eliana C De Benedetti
- Laboratorio de Investigaciones en Biotecnología Sustentable (LIBioS), Universidad Nacional de Quilmes, Roque Sáenz Peña 352, Bernal (B1876BXD), Argentina
| | - Mario E Lozano
- Laboratorio de Investigaciones en Biotecnología Sustentable (LIBioS), Universidad Nacional de Quilmes, Roque Sáenz Peña 352, Bernal (B1876BXD), Argentina
| | - Jorge A Trelles
- Laboratorio de Investigaciones en Biotecnología Sustentable (LIBioS), Universidad Nacional de Quilmes, Roque Sáenz Peña 352, Bernal (B1876BXD), Argentina
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