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Wang Z, Liu K. Effect of Intertidal Vegetation ( Suaeda salsa) Restoration on Microbial Diversity in the Offshore Areas of the Yellow River Delta. PLANTS (BASEL, SWITZERLAND) 2024; 13:213. [PMID: 38256766 PMCID: PMC10820354 DOI: 10.3390/plants13020213] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2023] [Revised: 01/05/2024] [Accepted: 01/09/2024] [Indexed: 01/24/2024]
Abstract
The coastal wetlands in the Yellow River Delta play a vital role in the ecological function of the area. However, the impact of primary restoration on microbial communities is not yet fully understood. Hence, this study aimed to analyze the bacterial and archaeal communities in the soil. The results indicated that Marinobacter and Halomonas were predominant in the bacterial community during spring and winter. On the other hand, Muribaculaceae and Helicobacter were prevalent during the core remediation of soil, while Inhella and Halanaerobium were predominant in non-vegetation-covered high-salinity soil. The bacterial Shannon index showed significant differences in vegetation-covered areas. For archaea, Salinigranum, Halorubrum, and Halogranum were dominant in vegetation areas, while Halolamina, Halogranum, and Halorubrum were prevalent in non-vegetation areas. The colonization of Suaeda salsa led to differences in the composition of bacteria (22.6%) and archaea (29.5%), and salt was one of the significant reasons for this difference. The microflora was more diverse, and the elements circulated after vegetation grounding, while the microbial composition in non-vegetation areas was similar, but there was potential competition. Therefore, vegetation restoration can effectively restore soil ecological function, while the microorganisms in the soil before restoration provide germplasm resources for pollutant degradation and antimicrobial development.
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Affiliation(s)
- Zhaohua Wang
- First Institute of Oceanography, MNR, Qingdao 266061, China;
| | - Kai Liu
- Dongying Research Institute for Oceanography Development, Dongying 257000, China
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Gaonkar SK, Alvares JJ, Furtado IJ. Recent advances in the production, properties and applications of haloextremozymes protease and lipase from haloarchaea. World J Microbiol Biotechnol 2023; 39:322. [PMID: 37755613 DOI: 10.1007/s11274-023-03779-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2023] [Accepted: 09/22/2023] [Indexed: 09/28/2023]
Abstract
Proteases and lipases are significant groups of enzymes for commercialization at the global level. Earlier, the industries depended on mesophilic proteases and lipases, which remain nonfunctional under extreme conditions. The discovery of extremophilic microorganisms, especially those belonging to haloarchaea, paved a new reserve of industrially competent extremozymes. Haloarchaea or halophilic archaea are polyextremophiles of domain Archaea that grow at high salinity, elevated temperature, pH range (pH 6-12), and low aw. Interestingly, haloarchaeal proteolytic and lipolytic enzymes also perform their catalytic function in the presence of 4-5 M NaCl in vivo and in vitro. Also, they are of great interest to study due to their capacity to function and are active at elevated temperatures, tolerance to pH extremes, and in non-aqueous media. In recent years, advances have been achieved in various aspects of genomic/molecular expression methods involving homologous and heterologous processes for the overproduction of these extremozymes and their characterization from haloarchaea. A few protease and lipase extremozymes have been successfully expressed in prokaryotic systems, especially E.coli, and enzyme modification techniques have improved the catalytic properties of the recombinant enzymes. Further, in-silico methods are currently applied to elucidate the structural and functional features of salt-stable protease and lipase in haloarchaea. In this review, the production and purification methods, catalytic and biochemical properties and biotechnological applications of haloextremozymes proteases and lipases are summarized along with recent advancements in overproduction and characterization of these enzymes, concluding with the directions for further in-depth research on proteases and lipases from haloarchaea.
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Affiliation(s)
- Sanket K Gaonkar
- Microbiology Programme, School of Biological Sciences and Biotechnology, Goa University, Taleigao Plateau, Goa, 403206, India.
- Department of Microbiology, P.E.S's R.S.N College of Arts and Science, Farmagudi, Ponda-Goa, 403401, India.
| | - Jyothi Judith Alvares
- Microbiology Programme, School of Biological Sciences and Biotechnology, Goa University, Taleigao Plateau, Goa, 403206, India
| | - Irene J Furtado
- Microbiology Programme, School of Biological Sciences and Biotechnology, Goa University, Taleigao Plateau, Goa, 403206, India
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Palansooriya KN, Dissanayake PD, Igalavithana AD, Tang R, Cai Y, Chang SX. Converting food waste into soil amendments for improving soil sustainability and crop productivity: A review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 881:163311. [PMID: 37044338 DOI: 10.1016/j.scitotenv.2023.163311] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2023] [Revised: 03/29/2023] [Accepted: 04/01/2023] [Indexed: 04/14/2023]
Abstract
One-third of the annual food produced globally is wasted and much of the food waste (FW) is unutilized; however, FW can be valorized into value-added industrial products such as biofuel, chemicals, and biomaterials. Converting FW into soil amendments such as compost, vermicompost, anaerobic digestate, biofertilizer, biochar, and engineered biochar is one of the best nutrient recovery and FW reuse approaches. The soil application of FW-based amendments can improve soil fertility, increase crop production, and reduce contaminants by altering soil's chemical, physical, microbial, and faunal properties. However, the efficiency of the amendment for improving ecosystem sustainability depends on the type of FW, conversion method, application rate, soil type, and crop type. Engineered biochar/biochar composite materials produced using FW have been identified as promising amendments for soil remediation, reducing commercial fertilizer usage, and increasing soil nutrient use efficiency. The development of quality standards and implementation of policies and regulations at all stages of the food supply chain are necessary to manage (reduce and re-use) FW.
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Affiliation(s)
| | | | | | - Ronggui Tang
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou 311300, China
| | - Yanjiang Cai
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou 311300, China
| | - Scott X Chang
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou 311300, China; Department of Renewable Resources, University of Alberta, Edmonton T6G 2E3, Canada.
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Paz A, Zerva A, Topakas E. Evaluation of olive mill wastewater as culture medium to produce lipolytic enzymes by Bacillus aryabhattai BA03. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2023. [DOI: 10.1016/j.bcab.2023.102643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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Simultaneous purification and characterization of detergent-stable, solvent-tolerant haloextremozymes protease and lipase from Haloferax sp. strain GUBF 2. Arch Microbiol 2022; 204:705. [DOI: 10.1007/s00203-022-03286-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2022] [Revised: 09/24/2022] [Accepted: 10/12/2022] [Indexed: 11/16/2022]
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Brandelli A, Daroit DJ. Unconventional microbial proteases as promising tools for the production of bioactive protein hydrolysates. Crit Rev Food Sci Nutr 2022; 64:4714-4745. [PMID: 36377687 DOI: 10.1080/10408398.2022.2145262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Enzymatic hydrolysis is the most prominent strategy to release bioactive peptides from different food proteins and protein-rich by-products. Unconventional microbial proteases (UMPs) have gaining increased attention for such purposes, particularly from the 2010s. In this review, we present and discuss aspects related to UMPs production, and their use to obtain bioactive protein hydrolysates. Antioxidant and anti-hypertensive potentials, commonly evaluated through in vitro testing, are mainly reported. The in vivo bioactivities of protein hydrolysates and peptides produced through UMPs action are highlighted. In addition to bioactivities, enzymatic hydrolysis acts by modulating the functional properties of proteins for potential food uses. The compiled literature indicates that UMPs are promising biocatalysts to generate bioactive protein hydrolysates, adding up to commercially available enzymes. From the recent interest on this topic, continuous and in-depth research is needed to advance toward the applicability and commercial utility of both UMPs and obtained hydrolysates.
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Affiliation(s)
- Adriano Brandelli
- Laboratório de Bioquímica e Microbiologia Aplicada, Instituto de Ciência e Tecnologia de Alimentos (ICTA), Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, Brazil
| | - Daniel Joner Daroit
- Programa de Pós-Graduação em Ambiente e Tecnologias Sustentáveis (PPGATS), Universidade Federal da Fronteira Sul (UFFS), Cerro Largo, Brazil
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Vivek K, Sandhia GS, Subramaniyan S. Extremophilic lipases for industrial applications: A general review. Biotechnol Adv 2022; 60:108002. [PMID: 35688350 DOI: 10.1016/j.biotechadv.2022.108002] [Citation(s) in RCA: 23] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2022] [Revised: 05/09/2022] [Accepted: 06/02/2022] [Indexed: 01/10/2023]
Abstract
With industrialization and development in modern science enzymes and their applications increased widely. There is always a hunt for new proficient enzymes with novel properties to meet specific needs of various industrial sectors. Along with the high efficiency, the green and eco-friendly side of enzymes attracts human attention, as they form a true answer to counter the hazardous and toxic conventional industrial catalyst. Lipases have always earned industrial attention due to the broad range of hydrolytic and synthetic reactions they catalyse. When these catalytic properties get accompanied by features like temperature stability, pH stability, and solvent stability lipases becomes an appropriate tool for use in many industrial processes. Extremophilic lipases offer the same, thermostable: hot and cold active thermophilic and psychrophilic lipases, acid and alkali resistant and active acidophilic and alkaliphilic lipases, and salt tolerant halophilic lipases form excellent biocatalyst for detergent formulations, biofuel synthesis, ester synthesis, food processing, pharmaceuticals, leather, and paper industry. An interesting application of these lipases is in the bioremediation of lipid waste in harsh environments. The review gives a brief account on various extremophilic lipases with emphasis on thermophilic, psychrophilic, halophilic, alkaliphilic, and acidophilic lipases, their sources, biochemical properties, and potential applications in recent decades.
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Affiliation(s)
- K Vivek
- Postgraduate Department of Botany and Research Centre (University of Kerala), University College, Thiruvananthapuram 695034, India
| | - G S Sandhia
- Postgraduate Department of Botany and Research Centre (University of Kerala), University College, Thiruvananthapuram 695034, India
| | - S Subramaniyan
- Postgraduate Department of Botany and Research Centre (University of Kerala), University College, Thiruvananthapuram 695034, India.
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Haloarchaea as emerging big players in future polyhydroxyalkanoate bioproduction: Review of trends and perspectives. CURRENT RESEARCH IN BIOTECHNOLOGY 2022. [DOI: 10.1016/j.crbiot.2022.09.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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Food Waste Biorefinery: Pathway towards Circular Bioeconomy. Foods 2021; 10:foods10061174. [PMID: 34073698 PMCID: PMC8225055 DOI: 10.3390/foods10061174] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Revised: 05/20/2021] [Accepted: 05/21/2021] [Indexed: 12/13/2022] Open
Abstract
Food waste biorefineries for the production of biofuels, platform chemicals and other bio-based materials can significantly reduce a huge environmental burden and provide sustainable resources for the production of chemicals and materials. This will significantly contribute to the transition of the linear based economy to a more circular economy. A variety of chemicals, biofuels and materials can be produced from food waste by the integrated biorefinery approach. This enhances the bioeconomy and helps toward the design of more green, ecofriendly, and sustainable methods of material productions that contribute to sustainable development goals. The waste biorefinery is a tool to achieve a value-added product that can provide a better utilization of materials and resources while minimizing and/or eliminating environmental impacts. Recently, food waste biorefineries have gained momentum for the production of biofuels, chemicals, and bio-based materials due to the shifting of regulations and policies towards sustainable development. This review attempts to explore the state of the art of food waste biorefinery and the products associated with it.
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