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1
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Jaiswal VK, Segarra-Martí J, Marazzi M, Zvereva E, Assfeld X, Monari A, Garavelli M, Rivalta I. First-principles characterization of the singlet excited state manifold in DNA/RNA nucleobases. Phys Chem Chem Phys 2020; 22:15496-15508. [DOI: 10.1039/d0cp01823f] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
TD-DFT characterization of the high-energy singlet excited state manifold of the canonical DNA/RNA nucleobasesin vacuumis assessed against RASPT2 reference computations for reliable simulations of linear and non-linear electronic spectra.
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Affiliation(s)
- Vishal K. Jaiswal
- Dipartimento di Chimica Industriale “Toso Montanari”
- Università di Bologna
- Viale del Risorgimento 4
- I-40136 Bologna
- Italy
| | - Javier Segarra-Martí
- Univ Lyon, Ens de Lyon, CNRS
- Université Lyon 1
- Laboratoire de Chimie UMR 5182
- Lyon
- France
| | - Marco Marazzi
- Université de Lorraine and CNRS
- LPCT UMR 7019
- F-54000 Nancy
- France
- CNRS, Laboratoire de Physique et Chimie Théoriques
| | - Elena Zvereva
- Université de Lorraine and CNRS
- LPCT UMR 7019
- F-54000 Nancy
- France
- CNRS, Laboratoire de Physique et Chimie Théoriques
| | - Xavier Assfeld
- Université de Lorraine and CNRS
- LPCT UMR 7019
- F-54000 Nancy
- France
- CNRS, Laboratoire de Physique et Chimie Théoriques
| | - Antonio Monari
- Université de Lorraine and CNRS
- LPCT UMR 7019
- F-54000 Nancy
- France
- CNRS, Laboratoire de Physique et Chimie Théoriques
| | - Marco Garavelli
- Dipartimento di Chimica Industriale “Toso Montanari”
- Università di Bologna
- Viale del Risorgimento 4
- I-40136 Bologna
- Italy
| | - Ivan Rivalta
- Dipartimento di Chimica Industriale “Toso Montanari”
- Università di Bologna
- Viale del Risorgimento 4
- I-40136 Bologna
- Italy
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2
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On the performance of time-dependent double-hybrid density functionals for description of absorption and emission spectra of heteroaromatic compounds. Theor Chem Acc 2016. [DOI: 10.1007/s00214-016-1838-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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3
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Raczyńska ED, Makowski M, Hallmann M, Kamińska B. Geometric and energetic consequences of prototropy for adenine and its structural models – a review. RSC Adv 2015. [DOI: 10.1039/c4ra17280a] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Prototropy for adenine and its convenient models causes parallel changes of geometric (HOMED) and energetic (ΔE) parameters for neutral tautomers.
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Affiliation(s)
- Ewa D. Raczyńska
- Department of Chemistry
- Warsaw University of Life Sciences (SGGW)
- 02-776 Warszawa
- Poland
| | | | - Małgorzata Hallmann
- Department of Chemistry
- Warsaw University of Life Sciences (SGGW)
- 02-776 Warszawa
- Poland
| | - Beata Kamińska
- Department of Chemistry
- Warsaw University of Life Sciences (SGGW)
- 02-776 Warszawa
- Poland
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4
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Benda Z, Szalay PG. Details of the Excited-State Potential Energy Surfaces of Adenine by Coupled Cluster Techniques. J Phys Chem A 2014; 118:6197-207. [DOI: 10.1021/jp505331s] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Zsuzsanna Benda
- Laboratory of Theoretical Chemistry, Institute of Chemistry, Eötvös University, P.O. Box 32, H-1518 Budapest, Hungary
| | - Péter G. Szalay
- Laboratory of Theoretical Chemistry, Institute of Chemistry, Eötvös University, P.O. Box 32, H-1518 Budapest, Hungary
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5
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Bousquet D, Fukuda R, Jacquemin D, Ciofini I, Adamo C, Ehara M. Benchmark Study on the Triplet Excited-State Geometries and Phosphorescence Energies of Heterocyclic Compounds: Comparison Between TD-PBE0 and SAC-CI. J Chem Theory Comput 2014; 10:3969-79. [DOI: 10.1021/ct5003797] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Diane Bousquet
- LECIME, Laboratoire
d′Electrochimie, Chimie des Interfaces et Modélisation
pour l′Energie, UMR 7575 CNRS, Ecole Nationale Supérieure
de Chimie de Paris, Chimie ParisTech, 11 rue P. et M. Curie, 75231 Paris Cedex 05, France
| | - Ryoichi Fukuda
- Institute for Molecular Science and Research Center for Computational Science, 38 Nishigo-naka, Myodaiji, Okazaki, 444-8585, Japan
- Elements
Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University, Nishikyo-ku, Kyoto 615-8520, Japan
| | - Denis Jacquemin
- CEISAM, UMR CNRS
6230, BP 92208, Université de Nantes, 2 Rue de la Houssinière, 44322 Nantes, France
- Institut Universitaire de France, 103 Boulevard Saint Michel, F-75005 Paris, France
| | - Ilaria Ciofini
- LECIME, Laboratoire
d′Electrochimie, Chimie des Interfaces et Modélisation
pour l′Energie, UMR 7575 CNRS, Ecole Nationale Supérieure
de Chimie de Paris, Chimie ParisTech, 11 rue P. et M. Curie, 75231 Paris Cedex 05, France
| | - Carlo Adamo
- LECIME, Laboratoire
d′Electrochimie, Chimie des Interfaces et Modélisation
pour l′Energie, UMR 7575 CNRS, Ecole Nationale Supérieure
de Chimie de Paris, Chimie ParisTech, 11 rue P. et M. Curie, 75231 Paris Cedex 05, France
- Institut Universitaire de France, 103 Boulevard Saint Michel, F-75005 Paris, France
| | - Masahiro Ehara
- Institute for Molecular Science and Research Center for Computational Science, 38 Nishigo-naka, Myodaiji, Okazaki, 444-8585, Japan
- Elements
Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University, Nishikyo-ku, Kyoto 615-8520, Japan
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6
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Bousquet D, Fukuda R, Maitarad P, Jacquemin D, Ciofini I, Adamo C, Ehara M. Excited-State Geometries of Heteroaromatic Compounds: A Comparative TD-DFT and SAC-CI Study. J Chem Theory Comput 2013; 9:2368-79. [DOI: 10.1021/ct400097b] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Diane Bousquet
- LECIME, Laboratoire
d’Electrochimie, Chimie des Interfaces et Modélisation
pour l’Energie, UMR 7575 CNRS, Ecole Nationale Supérieure de Chimie de Paris − Chimie ParisTech, 11 rue P. et M. Curie, 75231 Paris Cedex 05, France
| | - Ryoichi Fukuda
- Institute for Molecular Science and Research Center for Computational Science, 38 Nishigo-naka, Myodaiji, Okazaki, 444-8585, Japan
- Elements Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University Katsura, Kyoto 615-8510, Japan
| | - Phornphimon Maitarad
- Institute for Molecular Science and Research Center for Computational Science, 38 Nishigo-naka, Myodaiji, Okazaki, 444-8585, Japan
| | - Denis Jacquemin
- CEISAM, UMR CNRS 6230, BP 92208, Université de Nantes, 2, Rue de la Houssinière,
44322 Nantes, France
- Institut Universitaire de France, 103 Boulevard Saint
Michel, F-75005 Paris, France
| | - Ilaria Ciofini
- LECIME, Laboratoire
d’Electrochimie, Chimie des Interfaces et Modélisation
pour l’Energie, UMR 7575 CNRS, Ecole Nationale Supérieure de Chimie de Paris − Chimie ParisTech, 11 rue P. et M. Curie, 75231 Paris Cedex 05, France
| | - Carlo Adamo
- LECIME, Laboratoire
d’Electrochimie, Chimie des Interfaces et Modélisation
pour l’Energie, UMR 7575 CNRS, Ecole Nationale Supérieure de Chimie de Paris − Chimie ParisTech, 11 rue P. et M. Curie, 75231 Paris Cedex 05, France
- Institut Universitaire de France, 103 Boulevard Saint
Michel, F-75005 Paris, France
| | - Masahiro Ehara
- Institute for Molecular Science and Research Center for Computational Science, 38 Nishigo-naka, Myodaiji, Okazaki, 444-8585, Japan
- Elements Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University Katsura, Kyoto 615-8510, Japan
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7
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Raczyńska ED, Makowski M, Zientara-Rytter K, Kolczyńska K, Stępniewski TM, Hallmann M. Quantum-Chemical Studies on the Favored and Rare Tautomers of Neutral and Redox Adenine. J Phys Chem A 2013; 117:1548-59. [DOI: 10.1021/jp3081029] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Ewa D. Raczyńska
- Department of Chemistry, Warsaw University of Life Sciences (SGGW), ul. Nowoursynowska
159 c, 02-776 Warszawa, Poland
| | - Mariusz Makowski
- Faculty of Chemistry, Univeristy of Gdańsk, ul. Sobieskiego 18, 80-952
Gdańsk, Poland
| | - Katarzyna Zientara-Rytter
- Interdisciplinary
Department of
Biotechnology, Warsaw University of Life Sciences (SGGW), ul. Nowoursynowska 166, 02-776 Warszawa, Poland
| | - Katarzyna Kolczyńska
- Interdisciplinary
Department of
Biotechnology, Warsaw University of Life Sciences (SGGW), ul. Nowoursynowska 166, 02-776 Warszawa, Poland
| | - Tomasz M. Stępniewski
- Interdisciplinary
Department of
Biotechnology, Warsaw University of Life Sciences (SGGW), ul. Nowoursynowska 166, 02-776 Warszawa, Poland
| | - Małgorzata Hallmann
- Department of Chemistry, Warsaw University of Life Sciences (SGGW), ul. Nowoursynowska
159 c, 02-776 Warszawa, Poland
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8
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First observation of infrared and UV–visible absorption spectra of adenine radical in low-temperature argon matrices. J Mol Struct 2012. [DOI: 10.1016/j.molstruc.2012.03.070] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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