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Elangovan N, Thirumavalavan M, Sankar Ganesan T, Sowrirajan S, Chandrasekar S, Arumugam N. Comparison study (experimental and theoretical), hydrogen bond interaction through water, donor acceptor investigation and molecular docking study of 3,3-((1,2-phenylenebis (azaneylylidene)) bis (methaneylylidene)) diphenol. J Biomol Struct Dyn 2024:1-16. [PMID: 38656235 DOI: 10.1080/07391102.2024.2333465] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Accepted: 03/16/2024] [Indexed: 04/26/2024]
Abstract
The novel Schiff's base (CS6) was synthesized and confirmed by various studies. The B3LYP/cc-pVDZ basis set was used for theoretical study and the results indicated that both the theoretical and experimental studies correlated well. The interaction energy of CS6-water complex calculated by using the local energy decomposition analysis was found to be -7.28 kcal/mol. The TD-TFT method was used for the calculation of electronic absorption spectrum. This study confirmed that the observed wavelength and the simulated wavelength in the electronic spectra were almost similar. The electrophilic and nucleophilic attacking sites of the titled compound were identified by using FMO and MEP studies. The highest stabilization energy (30.19 kcal/mol) formed by LP (2) O24 to anti-bonding σ*(C18-C19) was confirmed by the NBO study. The localized and delocalized electrons were confirmed by ELF and LOL studies. The hydrogen bond interaction as well as the physical and chemical properties of CS6 indicated that it showed a moderate similarity to the drugs. The docking study confirmed that the dehydro-L-gulonate decarboxylase inhibitor (1Q6O) could interact with CS6 compound with the binding energy of -5.26 kcal/mol.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- N Elangovan
- Research Centre for Computational and Theoretical Chemistry, Musiri, Tiruchirappalli, Tamilnadu, India
| | - Munusamy Thirumavalavan
- Department of Chemistry, Saveetha Engineering College, Thandalam, Chennai, Tamil Nadu, India
| | - T Sankar Ganesan
- Department of Chemistry, Arignar Anna Government Arts College, Musiri-621211, Affiliated to Bharathidasan University, Tiruchirappalli, Tamilnadu, India
| | - S Sowrirajan
- Research Centre for Computational and Theoretical Chemistry, Musiri, Tiruchirappalli, Tamilnadu, India
| | - S Chandrasekar
- Department of Chemistry, Arignar Anna Government Arts College, Musiri-621211, Affiliated to Bharathidasan University, Tiruchirappalli, Tamilnadu, India
| | - Natarajan Arumugam
- Department of Chemistry, College of Science, King Saud University, Riyadh, Saudi Arabia
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Krishna PUN, Muraleedharan K. Possible NLO response and electrical/charge transfer capabilities of natural anthraquinones as p-type organic semiconductors: a DFT approach. J Mol Model 2024; 30:57. [PMID: 38300376 DOI: 10.1007/s00894-024-05848-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2023] [Accepted: 01/16/2024] [Indexed: 02/02/2024]
Abstract
CONTEXT Organic semiconductors (OSCs) have attracted a great deal of interest in recent days. There are various types of OSCs, among which small molecules have various inherent benefits. Further research is needed to advance this new kind of material because the field is still developing, and the current focus is on creating small molecules that exist naturally for OSCs. OSCs with nonlinear optical (NLO) characteristics offer a significant advantage over others. Thus, this study theoretically investigates naturally occurring anthraquinones such as chrysophanol and rhein as potential OSCs, as well as their NLO properties. The calculated properties include the ionization potential (IP), electron affinity (EA), and bandgap (Eg). The FMO energy levels together with the Eg, IP (8.17-8.53 eV), and EA (1.87-2.44 eV) suggest the semiconductor nature of the studied compounds. The calculated values of reorganization energy (λ) and transfer integrals (V) suggest the p-type character of both molecules. Rhein has the lowest λh (0.19 eV) and Eg (3.28 eV) and the highest Vh, predominantly because of its better p-type character. The polarizability increases due to the presence of an electron-withdrawing substituent, leading to better NLO performance for Rhein, which is supported by its lower LUMO and Eg values. METHODS The studied molecules were optimized with the DFT/B3LYP-GD3/6-31+G(d,p) method using Gaussian 16 software. The crystal structure was simulated with Materials Studio 7.0, and the V values were calculated with the ADF package. The CDD and DOS plots were obtained with the Multiwfn 3.8 program.
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Affiliation(s)
- P U Neenu Krishna
- Department of Chemistry, University of Calicut, 673635, Malappuram, India
| | - K Muraleedharan
- Department of Chemistry, University of Calicut, 673635, Malappuram, India.
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Wu S, Liu J, Li J, You W, Zhong K, Feng L, Han S, Zhang X, Pan T, Liu W, Zheng H. PMS coupled Mn(II) mediated electrochemistry processes (E-Mn(II)-PMS) on the efficient RB19 wastewater treatment: Focus on the regulation and reinforcement of Mn(III)/Mn(II). ENVIRONMENTAL RESEARCH 2024; 240:117220. [PMID: 37863166 DOI: 10.1016/j.envres.2023.117220] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Revised: 09/05/2023] [Accepted: 09/19/2023] [Indexed: 10/22/2023]
Abstract
Dye wastewater, represented by reactive blue 19 (RB19), severely threatens the aquatic ecological environment and human health, such that an efficient RB19 wastewater treatment technology should be urgently developed. Based on manganese ion-mediated electrochemistry, PMS was introduced to develop a novel electrocatalytic system (E-Mn(II)-PMS) that can efficiently remove and degrade RB19. The synergistic effect between E, Mn(II), and PMS was verified in this study through comparative experiments of a wide variety of systems. The removal efficiency of RB19 reached 95.1% in 50 min under reasonable power consumption (3.29 kWh/m3). Moreover, the effects exerted by different operating conditions (e.g., initial pH, current density, RB19 concentration, Mn(II) concentration, as well as PMS concentration) and water matrix on the degradation efficiency of RB19 were explored through single factor experiments. The active oxidation species (ROS) and their contribution rate for the degrading and removing RB19 were studied through quenching experiments, EPR experiments, TMT-15 metal capture experiments, as well as PP complexation experiments. The role played by non-free radicals took on critical significance in the oxidation removal of RB19, which comprised direct electro oxidation, Mn(III) oxidation, and 1O2 oxidation. The enhancement effect of free radicals (SO4·- and HO∙) was not sufficiently significant, with a low degree of contribution. The oxidation effect of the anode facilitated the conversion of Mn (II) to Mn (III), which was employed in PMS for expediting the production of 1O2. The reduction effect of the cathode blocked the production of Mn (IV) as a side reaction, such that the continuous circulation of manganese ions between divalent and trivalent was promoted. Meanwhile, the cathode reacted with PMS to generate a small part of SO4·- and HO∙. In addition, the reaction active site of RB19 was predicted, and a possible degradation pathway was proposed in accordance with the mass spectrometry results and the DFT calculation. As revealed by the results of the QSAR analysis and the plant culture experiments, the biological toxicity of RB19 was markedly reduced after the sample was administrated with E-Mn(II)-PMS. E-Mn(II)-PMS-mediated electrochemical technology displays several advantages (e.g., high efficiency, low consumption, recyclability, wide pH window, and strong applicability) while showing promising market development and utilization for treating dye wastewater.
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Affiliation(s)
- Shenyu Wu
- School of Civil and Transportation Engineering, Guangdong University of Technology, No100, Waihuan Xi Road, Guangzhou, Higher Education Mega Center, Panyu District, Guangzhou, 510006, Guangdong, China
| | - Jiajun Liu
- School of Civil and Transportation Engineering, Guangdong University of Technology, No100, Waihuan Xi Road, Guangzhou, Higher Education Mega Center, Panyu District, Guangzhou, 510006, Guangdong, China
| | - Junda Li
- School of Civil and Transportation Engineering, Guangdong University of Technology, No100, Waihuan Xi Road, Guangzhou, Higher Education Mega Center, Panyu District, Guangzhou, 510006, Guangdong, China
| | - Weihong You
- School of Civil Engineering, Southeast University, Nanjing, 210096, China
| | - Kunyu Zhong
- School of Civil and Transportation Engineering, Guangdong University of Technology, No100, Waihuan Xi Road, Guangzhou, Higher Education Mega Center, Panyu District, Guangzhou, 510006, Guangdong, China
| | - Li Feng
- School of Civil and Transportation Engineering, Guangdong University of Technology, No100, Waihuan Xi Road, Guangzhou, Higher Education Mega Center, Panyu District, Guangzhou, 510006, Guangdong, China.
| | - Shuai Han
- School of Civil and Transportation Engineering, Guangdong University of Technology, No100, Waihuan Xi Road, Guangzhou, Higher Education Mega Center, Panyu District, Guangzhou, 510006, Guangdong, China
| | - Xionghao Zhang
- School of Civil and Transportation Engineering, Guangdong University of Technology, No100, Waihuan Xi Road, Guangzhou, Higher Education Mega Center, Panyu District, Guangzhou, 510006, Guangdong, China
| | - Tingyu Pan
- School of Civil and Transportation Engineering, Guangdong University of Technology, No100, Waihuan Xi Road, Guangzhou, Higher Education Mega Center, Panyu District, Guangzhou, 510006, Guangdong, China
| | - Weiseng Liu
- School of Civil and Transportation Engineering, Guangdong University of Technology, No100, Waihuan Xi Road, Guangzhou, Higher Education Mega Center, Panyu District, Guangzhou, 510006, Guangdong, China
| | - Huaili Zheng
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing, 400045, China
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Aguilar-Llanos E, Carrera-Pacheco SE, González-Pastor R, Zúñiga-Miranda J, Rodríguez-Pólit C, Mayorga-Ramos A, Carrillo-Naranjo O, Guamán LP, Romero-Benavides JC, Cevallos-Morillo C, Echeverría GA, Piro OE, Alcívar-León CD, Heredia-Moya J. Crystal Structure, Hirshfeld Surface Analysis, and Biological Activities of Schiff-Base Derivatives of 4-Aminoantipyrine. ACS OMEGA 2023; 8:42632-42646. [PMID: 38024734 PMCID: PMC10652364 DOI: 10.1021/acsomega.3c05372] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Accepted: 09/26/2023] [Indexed: 12/01/2023]
Abstract
Eight Schiff bases, synthesized by the reaction of 4-aminoantipyrine with different cinnamaldehydes, were studied in the solid state by using vibrational spectroscopy (IR) and X-ray diffraction techniques. The analysis was extended to the solution phase through ultraviolet-vis, fluorescence spectroscopy, and cyclic voltammetry. Finally, the crystal structures of four compounds (3b, 3d, 3g, and 3h) were determined and studied. In addition to the experimental study, theoretical calculations using the semiempirical method PM6/ZDO were performed to understand better the compound's molecular properties, UV-vis, and infrared spectra. The primary difference is the angular conformation of the terminal phenyl rings around the corresponding linking C-N and C-C σ-bonds. Furthermore, as a result of extended bonding, the > C=N- azomethine group-containing Cpyr-N=(CH)-(CR)=(CH)-Cbz chain (with R=H for 3b, 3d, and 3h, and R=CH3 for 3g) is planar, nearly coplanar, with the mean plane of the pyrazole ring. Hirshfeld surface (HS) analysis was used to investigate the crystal packing and intermolecular interactions, which revealed that intermolecular C-H···O and C-H···N hydrogen bonds, π···π stacking, and C-H···π and C=O···π interactions stabilize the compounds. The energy contributions to the lattice energies of potential hydrogen bonds were primarily dispersive and repulsive. All derivatives were tested in vitro on LPS-stimulated mouse macrophages to assess their ability to suppress the LPS-induced inflammatory responses. Only a slight reduction in the level of NO production was found in activated macrophages treated with 3h. Additionally, the derivatives were tested for antimicrobial activity against several clinical bacteria and fungi strains, including three biofilm-forming microorganisms. Nevertheless, only Schiff base 3f showed interesting antibacterial activities with minimum inhibitory concentration (MIC) values as low as 15.6 μM against Enterobacter gergoviae. On the other hand, Schiff base 3f and, to a lesser extent, 3b and 3h showed antifungal activity against clinical isolates of Candida. The lowest MIC value was for 3f against Candida albicans (15.6 μM). It is interesting to note that the same Schiff bases exhibit the highest activity in both biological evaluations.
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Affiliation(s)
- Esteban Aguilar-Llanos
- Facultad
de Ciencias Químicas, Universidad
Central del Ecuador, Francisco Viteri s/n y Gilberto Gato Sobral, Quito 170521, Ecuador
| | - Saskya E. Carrera-Pacheco
- Centro
de Investigación Biomédica (CENBIO), Facultad de Ciencias
de la Salud Eugenio Espejo, Universidad
UTE, Quito 170527, Ecuador
| | - Rebeca González-Pastor
- Centro
de Investigación Biomédica (CENBIO), Facultad de Ciencias
de la Salud Eugenio Espejo, Universidad
UTE, Quito 170527, Ecuador
| | - Johana Zúñiga-Miranda
- Centro
de Investigación Biomédica (CENBIO), Facultad de Ciencias
de la Salud Eugenio Espejo, Universidad
UTE, Quito 170527, Ecuador
| | - Cristina Rodríguez-Pólit
- Centro
de Investigación Biomédica (CENBIO), Facultad de Ciencias
de la Salud Eugenio Espejo, Universidad
UTE, Quito 170527, Ecuador
| | - Arianna Mayorga-Ramos
- Centro
de Investigación Biomédica (CENBIO), Facultad de Ciencias
de la Salud Eugenio Espejo, Universidad
UTE, Quito 170527, Ecuador
| | - Oscar Carrillo-Naranjo
- Centro
de Investigación Biomédica (CENBIO), Facultad de Ciencias
de la Salud Eugenio Espejo, Universidad
UTE, Quito 170527, Ecuador
| | - Linda P. Guamán
- Centro
de Investigación Biomédica (CENBIO), Facultad de Ciencias
de la Salud Eugenio Espejo, Universidad
UTE, Quito 170527, Ecuador
| | - Juan Carlos Romero-Benavides
- Departamento
de Química, Facultad de Ciencias Exactas y Naturales, Universidad Técnica Particular de Loja, Loja 1101608, Ecuador
| | - Carlos Cevallos-Morillo
- Facultad
de Ciencias Químicas, Universidad
Central del Ecuador, Francisco Viteri s/n y Gilberto Gato Sobral, Quito 170521, Ecuador
| | - Gustavo A. Echeverría
- Departamento
de Física, Facultad de Ciencias Exactas, Universidad Nacional de La Plata and Institute IFLP (CONICET, CCT-La
Plata), C. C. 67, La Plata 1900, Argentina
| | - Oscar E. Piro
- Departamento
de Física, Facultad de Ciencias Exactas, Universidad Nacional de La Plata and Institute IFLP (CONICET, CCT-La
Plata), C. C. 67, La Plata 1900, Argentina
| | - Christian D. Alcívar-León
- Facultad
de Ciencias Químicas, Universidad
Central del Ecuador, Francisco Viteri s/n y Gilberto Gato Sobral, Quito 170521, Ecuador
| | - Jorge Heredia-Moya
- Centro
de Investigación Biomédica (CENBIO), Facultad de Ciencias
de la Salud Eugenio Espejo, Universidad
UTE, Quito 170527, Ecuador
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Shankar MG, Kumaravel R, Subashini A, Ramamurthi K, Kučeráková M, Dušek M, Stoeckli-Evans H. Syntheses, crystal structures, Hirshfeld surface analyses and energy frameworks of two 4-amino-anti-pyrine Schiff base compounds: ( E)-4-{[4-(di-ethyl-amino)-benzyl-idene]amino}-1,5-dimethyl-2-phenyl-1 H-pyrazol-3(2 H)-one and ( E)-4-[(4-fluoro-benzyl-idene)amino]-1,5-dimethyl-2-phenyl-1 H-pyrazol-3(2 H)-one. Acta Crystallogr E Crystallogr Commun 2023; 79:538-544. [PMID: 37288464 PMCID: PMC10242735 DOI: 10.1107/s2056989023004085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Accepted: 05/08/2023] [Indexed: 06/09/2023]
Abstract
The title Schiff base compounds, C22H26N4O (I) and C18H16FN3O (II), were each synthesized by a single-step condensation reaction. The substituted benzyl-idene ring is inclined to the pyrazole ring mean planes by 22.92 (7)° in I and 12.70 (9)° in II. The phenyl ring of the 4-amino-anti-pyrine unit is inclined to the pyrazole ring mean plane by 54.87 (7)° in I and by 60.44 (8)° in II. In the crystal of I, the mol-ecules are linked by C-H⋯O hydrogen bonds and C-H⋯π inter-actions to form layers lying parallel to (001). In the crystal of II, the mol-ecules are linked by C-H⋯O and C-H⋯F hydrogen bonds and C-H⋯π inter-actions, thereby forming layers lying parallel to (010). Hirshfeld surface analysis was employed to further qu-antify the inter-atomic inter-actions in the crystals of both compounds.
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Affiliation(s)
- M. G. Shankar
- PG and Research Department of Physics, Srimad Andavan Arts Science College (Autonomous), Affiliated to Bharathidasan University, Tiruchirappalli - 620 005, Tamilnadu, India
| | - R. Kumaravel
- Department of Physics, Annapoorana Engineering College, Salem – 636 308, Tamilnadu, India
| | - A. Subashini
- PG and Research Department of Physics, Srimad Andavan Arts Science College (Autonomous), Affiliated to Bharathidasan University, Tiruchirappalli - 620 005, Tamilnadu, India
| | - K. Ramamurthi
- Crystal Growth and Thin Film Laboratory, Department of Physics, Bharathidasan University, Tiruchirappalli - 620024, Tamilnadu, India
| | - Monika Kučeráková
- Institute of Physics ASCR, Na Slovance 2, 182 21 Praha 8, Czech Republic
| | - Michal Dušek
- Institute of Physics ASCR, Na Slovance 2, 182 21 Praha 8, Czech Republic
| | - Helen Stoeckli-Evans
- Institute of Physics, University of Neuchâtel, rue Emile-Argand 11, 2000 Neuchâtel, Switzerland
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Unraveling the Pharmaceutical Benefits of Freshly Prepared Amino Acid-Based Schiff Bases Via DFT, In Silico Molecular Docking and ADMET. J Fluoresc 2022; 32:1873-1888. [PMID: 35749028 DOI: 10.1007/s10895-022-02987-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2021] [Accepted: 05/31/2022] [Indexed: 10/17/2022]
Abstract
A series of amino acid-based Schiff bases have been synthesized using a facile condensation between benzil (a diketone) and amino acid in the presence of a base. The formation of Schiff base compounds has been ensured by elemental analysis, FT-IR, 1H-NMR, 13C-NMR and UV-Vis. spectra. Density Functional Theory (DFT) calculations have been explored in order to get intuition into the molecular structure and chemical reactivity of the compounds. The DFT, optimized structure of the compounds, has been used to attain the molecular docking studies with DNA structure to find the favorable mode of interaction. In silico ADME/Tox profile of the compounds has been predicted using pkCSM web tools, exhibiting suitable values of absorption, distribution, and metabolism. These obtained parameters are connected to bioavailability. In addition, toxicity, skin sensitization and cardiotoxicity (hERG) analysis have been performed for evaluating the drug-like character of the prepared Schiff bases. The findings obtained from this study may find applications in the field focusing on the production of efficient and harmless pharmacological drugs.
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Synthesis, structural, vibrational, molecular docking and nonlinear optical studies of (E)-N′-(2,3-dimethoxybenzylidene)-4-fluorobenzohydrazide. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132375] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Spectroscopic characterization of 4,5-diphenyl-2-(2,4,5-trimethoxyphenyl)-1H-imidazole obtained from the condensation of benzyl. Experimental and DFT approach. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.131269] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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