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Bi R, Yang J, Huang C, Zhang X, Liao R, Ma H. Pulse Feature-Enhanced Classification of Microalgae and Cyanobacteria Using Polarized Light Scattering and Fluorescence Signals. BIOSENSORS 2024; 14:160. [PMID: 38667153 PMCID: PMC11048193 DOI: 10.3390/bios14040160] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Revised: 03/25/2024] [Accepted: 03/26/2024] [Indexed: 04/28/2024]
Abstract
Harmful algal blooms (HABs) pose a global threat to the biodiversity and stability of local aquatic ecosystems. Rapid and accurate classification of microalgae and cyanobacteria in water is increasingly desired for monitoring complex water environments. In this paper, we propose a pulse feature-enhanced classification (PFEC) method as a potential solution. Equipped with a rapid measurement prototype that simultaneously detects polarized light scattering and fluorescence signals of individual particles, PFEC allows for the extraction of 38 pulse features to improve the classification accuracy of microalgae, cyanobacteria, and other suspended particulate matter (SPM) to 89.03%. Compared with microscopic observation, PFEC reveals three phyla proportions in aquaculture samples with an average error of less than 14%. In this paper, PFEC is found to be more accurate than the pulse-average classification method, which is interpreted as pulse features carrying more detailed information about particles. The high consistency of the dominant and common species between PFEC and microscopy in all field samples also demonstrates the flexibility and robustness of the former. Moreover, the high Pearson correlation coefficient accounting for 0.958 between the cyanobacterial proportion obtained by PFEC and the cyanobacterial density given by microscopy implies that PFEC serves as a promising early warning tool for cyanobacterial blooms. The results of this work suggest that PFEC holds great potential for the rapid and accurate classification of microalgae and cyanobacteria in aquatic environment monitoring.
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Affiliation(s)
- Ran Bi
- School of Physics and Optoelectronic Engineering, Yangtze University, Jingzhou 434023, China;
- Shenzhen Key Laboratory of Marine IntelliSense and Computation, Institute for Ocean Engineering, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China; (J.Y.); (C.H.)
| | - Jianxiong Yang
- Shenzhen Key Laboratory of Marine IntelliSense and Computation, Institute for Ocean Engineering, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China; (J.Y.); (C.H.)
- Division of Advanced Manufacturing, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China
| | - Chengqi Huang
- Shenzhen Key Laboratory of Marine IntelliSense and Computation, Institute for Ocean Engineering, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China; (J.Y.); (C.H.)
| | - Xiaoyu Zhang
- Hainan Institute, Zhejiang University, Hangzhou 310058, China;
| | - Ran Liao
- Shenzhen Key Laboratory of Marine IntelliSense and Computation, Institute for Ocean Engineering, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China; (J.Y.); (C.H.)
- Guangdong Research Center of Polarization Imaging and Measurement Engineering Technology, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China;
| | - Hui Ma
- Guangdong Research Center of Polarization Imaging and Measurement Engineering Technology, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China;
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He H, Liu Q, Tang J, Zhu P, Chen S, Song X, Wu S. Validation of the polarized Monte Carlo model of shipborne oceanic lidar returns. OPTICS EXPRESS 2023; 31:43250-43268. [PMID: 38178423 DOI: 10.1364/oe.511445] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Accepted: 11/22/2023] [Indexed: 01/06/2024]
Abstract
The polarized Monte Carlo (PMC) model has been applied to study the backscattering measurement of oceanic lidar. This study proposes a PMC model for shipborne oceanic lidar simulation. This model is validated by the Rayleigh scattering experiment, lidar equation, and in-situ lidar LOOP (Lidar for Ocean Optics Profiler) returns [Opt. Express30, 8927 (2022)10.1364/OE.449554]. The relative errors of the simulated Rayleigh scattering results are less than 0.07%. The maximum mean relative error (MRE) of the simulated single scattering scalar signals and lidar equation results is 30.94%. The maximum MRE of simulated total scattering signals and LOOP returns in parallel and cross channels are 33.29% and 22.37%, respectively, and the maximal MRE of the depolarization ratio is 24.13%. The underwater light field of the laser beam is also simulated to illustrate the process of beam energy spreading. These results prove the validity of the model. Further analyses show that the measured signals of shipborne lidar LOOP are primarily from the particle single scatterings. This model is significant for analyzing the signal contributions from multiple scattering and single scattering.
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Pan T, He X, Bai Y, Li T, Gong F, Wang D. Satellite retrieval of the linear polarization components of the water-leaving radiance in open oceans. OPTICS EXPRESS 2023; 31:15917-15939. [PMID: 37157682 DOI: 10.1364/oe.489680] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Atmospheric correction (AC) of polarized radiances acquired by polarization satellite sensors, remains a challenge due to the complex radiative transfer processes of the coupled ocean-atmosphere system. In this study, we proposed an innovative polarized AC algorithm built on the near-infrared band (PACNIR) with an emphasis on the retrieval of the linear polarization components of the water-leaving radiance in clear open oceans. This algorithm was based on the black ocean assumption in the near-infrared band and fitted polarized radiance measurements along multiple observation directions with nonlinear optimized processing. Our retrieval algorithm notably inverted the linearly polarized components of the water-leaving radiance and aerosol parameters. Compared with that of the simulated linear polarization components of the water-leaving radiance via the vector radiative transfer model for the studied sea regions, the mean absolute error of the PACNIR-retrieved linearly polarized components (nQw and nUw) exhibited a magnitude of 10-4, while the magnitude of that of the simulated nQw and nUw data was 10-3. Moreover, the PACNIR-retrieved aerosol optical thicknesses at 865 nm exhibited a mean absolute percentage error of approximately 30% relative to in situ values obtained from Aerosol Robotic Network-Ocean Color (AERONET-OC) sites. The PACNIR algorithm could facilitate AC of the polarized data provided by the next generation of multiangle polarization satellite ocean color sensors.
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Sun Z, Wu D, Lv Y. Effects of water salinity on the multi-angular polarimetric properties of light reflected from smooth water surfaces. APPLIED OPTICS 2022; 61:4527-4534. [PMID: 36256294 DOI: 10.1364/ao.458737] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Accepted: 05/05/2022] [Indexed: 06/16/2023]
Abstract
Salinity is an important environmental factor regulating the aquatic system structure of lakes and other water bodies. Changes in salinity, which can be caused by human activities, can adversely impact the life of water organisms. The refractive index, which can be directly related to water salinity, also controls the polarimetric properties of light reflected from the water surface. In this study, polarimetric measurements of smooth water surfaces with different salinity content were performed at different viewing zenith angles in the wavelength range of 450-1000 nm in the specular reflection directions. The results show that the light reflected from the water surface (defined as reflectance factor) in one measurement direction can be replaced by the reflectance factor derived from polarimetric measurements, and if the polarizer absorptance is considered, the average relative difference is less than 3%. The degree of linear polarization (DOLP) was used to retrieve the refractive indices of water with different salinities based on the Fresnel reflection coefficient. The inverted refractive indices not only have high accuracy (uncertainty from 0.9% to 1.8%) but also have a very strong relationship with the water salinity content. Our study shows the possibility of estimating the variation in water salinity using multi-angular polarimetric measurements.
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Foster R, Gray D, Bowles J, Korwan D, Slutsker I, Sorokin M, Roche M, Smith A, Pezzaniti L. Mantis: an all-sky visible-to-near-infrared hyper-angular spectropolarimeter. APPLIED OPTICS 2020; 59:5896-5909. [PMID: 32672732 DOI: 10.1364/ao.393822] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2020] [Accepted: 05/28/2020] [Indexed: 06/11/2023]
Abstract
In this paper, we introduce and present first results from Mantis, a pushbroom type spectropolarimeter recently acquired by the Naval Research Laboratory and built by Polaris Sensor Technologies, Inc. The instrument is designed for high spatial and spectral resolution polarimetric imaging of downwelling skylight. Linear Stokes vectors are acquired over the spectral range of 382-1017 nm, with ≈0.64nm channel spacing, and each line scan consists of 2226 pixels over a 72° field of view (0.75 mrad instantaneous). Measurement of the full sky dome is achieved through the use of a high-precision motorized pan-tilt unit and systematic scanning. An automated Sun shade allows for data collection in the main solar plane without saturation of the focal plane. The uncertainty in the degree of linear polarization varies between 0.07% and 0.5%, depending on incidence angle and wavelength. The total radiometric uncertainty is 2.07% to 2.5%, of which 2% is absolute calibration error. Preliminary data analysis reveals the instrument has a large potential for remote sensing applications.
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Gilerson A, Carrizo C, Ibrahim A, Foster R, Harmel T, El-Habashi A, Lee Z, Yu X, Ladner S, Ondrusek M. Hyperspectral polarimetric imaging of the water surface and retrieval of water optical parameters from multi-angular polarimetric data. APPLIED OPTICS 2020; 59:C8-C20. [PMID: 32400561 DOI: 10.1364/ao.59.0000c8] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2019] [Accepted: 11/27/2019] [Indexed: 06/11/2023]
Abstract
Total and polarized radiances from above the ocean surface are measured by a state-of-the-art snapshot hyperspectral imager. A computer-controlled filter wheel is installed in front of the imager allowing for recording of division-of-time Stokes vector images from the ocean surface. This system, to the best of our knowledge, for the first time provided a capability of hyperspectral polarimetric multi-angular measurements of radiances from above the water surface. Several sets of measurements used in the analysis were acquired from ocean platforms and from shipborne observations. Measurements made by the imager are compared with simulations using a vector radiative transfer (VRT) code showing reasonable agreement. Analysis of pixel-to-pixel variability of the total and polarized above-water radiance for the viewing angles of 20°-60° in different wind conditions enable the estimation of uncertainties in measurements of these radiances in the polarized mode for the spectral range of 450-750 nm, thus setting requirements for the quality of polarized measurements. It is shown that there is a noticeable increase of above-water degree of linear polarization (DoLP) as a function of the viewing angle, which is due both to the larger DoLP of the light from the water body and the light reflected from the ocean surface. Results of measurements and VRT simulations are applied for the multi-angular retrieval of the ratio of beam attenuation coefficient (ctot) to absorption coefficient (atot) in addition to the other parameters such as absorption and backscattering coefficients retrieved from traditional unpolarized methods.
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Sorooshian A, Corral AF, Braun RA, Cairns B, Crosbie E, Ferrare R, Hair J, Kleb MM, Mardi AH, Maring H, McComiskey A, Moore R, Painemal D, Jo Scarino A, Schlosser J, Shingler T, Shook M, Wang H, Zeng X, Ziemba L, Zuidema P. Atmospheric Research Over the Western North Atlantic Ocean Region and North American East Coast: A Review of Past Work and Challenges Ahead. JOURNAL OF GEOPHYSICAL RESEARCH. ATMOSPHERES : JGR 2020; 125:10.1029/2019jd031626. [PMID: 32699733 PMCID: PMC7375207 DOI: 10.1029/2019jd031626] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Accepted: 01/21/2020] [Indexed: 05/26/2023]
Abstract
Decades of atmospheric research have focused on the Western North Atlantic Ocean (WNAO) region because of its unique location that offers accessibility for airborne and ship measurements, gradients in important atmospheric parameters, and a range of meteorological regimes leading to diverse conditions that are poorly understood. This work reviews these scientific investigations for the WNAO region, including the East Coast of North America and the island of Bermuda. Over 50 field campaigns and long-term monitoring programs, in addition to 715 peer-reviewed publications between 1946 and 2019 have provided a firm foundation of knowledge for these areas. Of particular importance in this region has been extensive work at the island of Bermuda that is host to important time series records of oceanic and atmospheric variables. Our review categorizes WNAO atmospheric research into eight major categories, with some studies fitting into multiple categories (relative %): Aerosols (25%), Gases (24%), Development/Validation of Techniques, Models, and Retrievals (18%), Meteorology and Transport (9%), Air-Sea Interactions (8%), Clouds/Storms (8%), Atmospheric Deposition (7%), and Aerosol-Cloud Interactions (2%). Recommendations for future research are provided in the categories highlighted above.
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Affiliation(s)
- Armin Sorooshian
- Department of Chemical and Environmental Engineering, University of Arizona, Tucson, AZ
- Department of Hydrology and Atmospheric Sciences, University of Arizona, Tucson, AZ
| | - Andrea F. Corral
- Department of Chemical and Environmental Engineering, University of Arizona, Tucson, AZ
| | - Rachel A. Braun
- Department of Chemical and Environmental Engineering, University of Arizona, Tucson, AZ
| | - Brian Cairns
- NASA Goddard Institute for Space Studies, New York, NY
| | - Ewan Crosbie
- NASA Langley Research Center, Hampton, VA
- Science Systems and Applications, Inc., Hampton, VA
| | | | | | | | - Ali Hossein Mardi
- Department of Chemical and Environmental Engineering, University of Arizona, Tucson, AZ
| | | | | | | | - David Painemal
- NASA Langley Research Center, Hampton, VA
- Science Systems and Applications, Inc., Hampton, VA
| | - Amy Jo Scarino
- NASA Langley Research Center, Hampton, VA
- Science Systems and Applications, Inc., Hampton, VA
| | - Joseph Schlosser
- Department of Chemical and Environmental Engineering, University of Arizona, Tucson, AZ
| | | | | | - Hailong Wang
- Atmospheric Sciences and Global Change Division, Pacific Northwest National Laboratory, Richland, WA
| | - Xubin Zeng
- Department of Hydrology and Atmospheric Sciences, University of Arizona, Tucson, AZ
| | | | - Paquita Zuidema
- Rosenstiel School of Marine and Atmospheric Science, University of Miami, Miami, FL
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Carrizo C, Gilerson A, Foster R, Golovin A, El-Habashi A. Characterization of radiance from the ocean surface by hyperspectral imaging. OPTICS EXPRESS 2019; 27:1750-1768. [PMID: 30696236 DOI: 10.1364/oe.27.001750] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2018] [Accepted: 01/09/2019] [Indexed: 06/09/2023]
Abstract
A novel snapshot hyperspectral imager is introduced for ocean color (OC) applications and its capabilities are demonstrated. The instrument provides hyperspectral radiance images with a wide field-of-view (FOV) and short exposure time, which is valuable for the direct characterization of the wind-roughened surface in various illumination conditions and wind speeds. Uncertainties in the total(Lt), sky (Ls) and derived water-leaving (Lw)radiances at viewing angles of 20-60° are determined as a function of wind speed together with associated correlation coefficients and variances of the sea surface reflectance coefficient ρ. Estimated Lw uncertainties can partially explain the inaccuracy of satellite retrievals in the blue bands in the coastal waters. It is shown that in above-water measurements in no-glint conditions with viewing and azimuth angles of 40° and 90°, respectively, for both Lt(λ) and Ls(λ) the impact of FOV is minimal at least up to measured W = 5.7 m/s for full-angle FOV of 4° and larger. Implications of uncertainties for the derivation of water leaving radiance in above-water ship-borne and AERONET-OC measurements are discussed.
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Gilerson A, Carrizo C, Foster R, Harmel T. Variability of the reflectance coefficient of skylight from the ocean surface and its implications to ocean color. OPTICS EXPRESS 2018; 26:9615-9633. [PMID: 29715911 DOI: 10.1364/oe.26.009615] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2018] [Accepted: 03/25/2018] [Indexed: 06/08/2023]
Abstract
The value and spectral dependence of the reflectance coefficient (ρ) of skylight from wind-roughened ocean surfaces is critical for determining accurate water leaving radiance and remote sensing reflectances from shipborne, AERONET-Ocean Color and satellite observations. Using a vector radiative transfer code, spectra of the reflectance coefficient and corresponding radiances near the ocean surface and at the top of the atmosphere (TOA) are simulated for a broad range of parameters including flat and windy ocean surfaces with wind speeds up to 15 m/s, aerosol optical thicknesses of 0-1 at 440nm, wavelengths of 400-900 nm, and variable Sun and viewing zenith angles. Results revealed a profound impact of the aerosol load and type on the spectral values of ρ. Such impacts, not included yet in standard processing, may produce significant inaccuracies in the reflectance spectra retrieved from above-water radiometry and satellite observations. Implications for satellite cal/val activities as well as potential changes in measurement and data processing schemes are discussed.
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