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Sheena Mary Y, Shyma Mary Y, Temiz-Arpaci O, Yadav R, Celik I. DFT, docking, MD simulation, and vibrational spectra with SERS analysis of a benzoxazole derivative: an anti-cancerous drug. CHEMICAL PAPERS 2021. [DOI: 10.1007/s11696-021-01659-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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2
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Ly NH, Lee C, Jang S, Lee JI, Joo S. Vibrational Spectroscopic Estimation of
Semivolatile
Organic Compound Evaporation From Glass Surfaces. B KOREAN CHEM SOC 2020. [DOI: 10.1002/bkcs.12129] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Nguyễn Hoàng Ly
- Department of Chemistry Soongsil University Seoul 06978 Republic of Korea
| | - Cheolmin Lee
- Department of Chemical & Biological Engineering Seokyeong University Seoul 02713 Republic of Korea
| | - Soonmin Jang
- Department of Chemistry Sejong University Seoul 143‐747 Republic of Korea
| | - Jung Il Lee
- Korea Testing & Research Institute Gwacheon 13810 Republic of Korea
| | - Sang‐Woo Joo
- Department of Chemistry Soongsil University Seoul 06978 Republic of Korea
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3
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Dikmen G. The Raman, SERS and computational studies of 3,5-dimethoxy-4-hydroxycinnamic acid and its silver complex. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 225:117520. [PMID: 31521984 DOI: 10.1016/j.saa.2019.117520] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Revised: 09/04/2019] [Accepted: 09/05/2019] [Indexed: 06/10/2023]
Abstract
Optimized chemical structure, Raman and SERS spectra of 3,5-dimethoxy-4-hydroxycinnamic acid (35D4HCA) molecule and its silver (Ag) complex were calculated using time-dependent density functional theory in conjunction with B3LYP functional and LANL2DZ/6-311 + G(d,p) basis sets. Moreover, excitation and HOMO-LUMO energies were computed by the same level of theory. Because of the fact that energy of excitation electronic transition depends on infinite lifetime approximation, Raman activities were calculated under this approximation. Normal Raman spectra and SERS spectra of 35D4HCA and its silver complex were obtained with different excitation laser frequencies such as 532 nm and 785 nm and so interaction between metal surface and 35D4HCA was examined using SERS spectra. Moreover, theoretical and experimental UV-VIS spectra in the water of 35D4HCA and its silver complex were obtained and transitions, wavelengths and energy values of samples were shown. 1H NMR experiment of 35D4HCA and its silver complex were performed and it was determined interaction between Ag atoms and 35D4HCA. In order to determine thermal properties of 35D4HCA and its silver complex, TG and DTA analysis were carried out. HOMO and LUMO energy levels corresponding to these energy values were determined and transitions between these levels were determined.
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Affiliation(s)
- Gökhan Dikmen
- Eskisehir Osmangazi University, Central Research Laboratory Research and Application Center (ARUM), Eskisehir 26480, Turkey.
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4
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Heng W, Su M, Cheng H, Shen P, Liang S, Zhang L, Wei Y, Gao Y, Zhang J, Qian S. Incorporation of Complexation into a Coamorphous System Dramatically Enhances Dissolution and Eliminates Gelation of Amorphous Lurasidone Hydrochloride. Mol Pharm 2019; 17:84-97. [DOI: 10.1021/acs.molpharmaceut.9b00772] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | | | | | | | | | - Linghe Zhang
- Department of Chemistry, Smith College, Northampton, Massachusetts 01063, United States
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5
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Wang WT, Zhang H, Yuan Y, Guo Y, He SX. Research Progress of Raman Spectroscopy in Drug Analysis. AAPS PharmSciTech 2018; 19:2921-2928. [PMID: 30091063 DOI: 10.1208/s12249-018-1135-8] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2018] [Accepted: 07/24/2018] [Indexed: 12/31/2022] Open
Abstract
Raman spectroscopy is a spectroscopic analysis technique that enables rapid qualitative and quantitative detection based on inelastic collision and Raman scattering intensity. This review detailed the generation principle, instrument composition, influencing factors, and common classifications of Raman spectrum. Furthermore, it summarized and forecast the research progress of Raman spectroscopy in the field of drug analysis simultaneously over the past decade, including the identification of active pharmaceutical ingredients (APIs), qualitative and quantitative studies of pharmaceutical preparations, detection of illicit drugs, the identification of Chinese herbal medicines, and the combination with other technologies. The development of Raman spectroscopy in other fields is additionally summarized.
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6
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Kavimani M, Balachandran V, Narayana B, Vanasundari K, Revathi B. Quantum chemical calculation (RDG) of molecular structural evaluation, Hirshfeld, DSSC and docking studies of 4-nitrophenylacetic acid. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.07.094] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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7
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Swiech D, Ozaki Y, Kim Y, Proniewicz E. Surface- and tip-enhanced Raman scattering of bradykinin onto the colloidal suspended Ag surface. Phys Chem Chem Phys 2016; 17:17140-9. [PMID: 26068400 DOI: 10.1039/c5cp02319j] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this paper, surface- (SERS) and tip-enhanced Raman scattering (TERS) techniques were used to determine the adsorption mode of bradykinin (BK), a small peptide implicated in, for example, carcinoma growth, onto colloidal suspended Ag surfaces under various environmental conditions, including: peptide concentrations (10(-5)-10(-7) M), excitation wavelengths (514.5 and 785.0 nm), and pH of aqueous sol solutions (from pH = 3 to pH = 11). The metal surface plasmon and rheology of the colloidal suspended Ag surface were explored by ultraviolet-visible (UV-Vis) spectroscopy and atomic force/scanning electron microscopy (AFM/SEM). The SERS results indicated that the peptide concentration of 10(-5) M was the optimal peptide concentration for monolayer colloidal coverage. The Phe(5/8) and Arg(9) residues of BK generally participated in the interactions with colloidal suspended Ag surfaces. The amide group appeared to be arranged in the same manner to the Ag surface in the pH range of 3 to 11. At acidic pH of the solution (pH = 3 to 5), the BK -COO(-) terminal group binds to the Ag surface as a bidentate (at pH = 3) or monodentate (at pH = 5) chelating ligand. At pH = 11, the imino group of Arg(9), probably due to its -C[double bond, length as m-dash]N(⊕)H2 protonation state, was not involved in the interaction with Ag. The reduction in the solution alkalinity (pH = 9) produced the deprotonation of the -C=N(⊕)H2 group followed by group rearrangement in a way favoring the interaction between the lone electron pair on N and Ag. The TERS studies confirmed the proposed, on the basis of SERS, behavior of BK onto the colloidal suspended Ag at pH = 7 and showed that in different points of the colloidal suspended Ag surface the same peptide fragments approximately having the same orientations with respect to this surface interact with it.
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Affiliation(s)
- D Swiech
- Faculty of Foundry Engineering, AGH University of Science and Technology, ul. Reymonta 23, 30-059 Kraków, Poland
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8
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Mary YS, Panicker CY, Kavitha CN, Yathirajan HS, Siddegowda MS, Cruz SMA, Nogueira HIS, Al-Saadi AA, Van Alsenoy C, War JA. Spectroscopic investigation (FT-IR, FT-Raman and SERS), vibrational assignments, HOMO-LUMO analysis and molecular docking study of Opipramol. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 137:547-559. [PMID: 25240828 DOI: 10.1016/j.saa.2014.08.106] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2014] [Revised: 08/10/2014] [Accepted: 08/24/2014] [Indexed: 06/03/2023]
Abstract
FT-IR and FT-Raman spectra of Opipramol were recorded and analyzed. SERS spectrum was recorded in silver colloid. The vibrational wave numbers were computed using DFT quantum chemical calculations. The data obtained from wave number calculations are used to assign vibrational bands obtained in infrared and Raman spectra as well as in SERS of the studied molecule. Potential energy distribution was done using GAR2PED program. The geometrical parameters (DFT) of the title compound are in agreement with the XRD results. The presence of CH2 stretching modes in the SERS spectrum indicates the close of piperazine ring with the metal surface and the interaction of the silver surface with this moiety. NBO analysis, HOMO-LUMO, first hyperpolarizability and molecular electrostatic potential results are also reported. The inhibitor Opipramol forms a stable complex with P4502C9 as is evident from the ligand-receptor interactions and a -9.0 kcal/mol docking score and may be an effective P4502C9 inhibitor if further biological explorations are carried out.
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Affiliation(s)
- Y Sheena Mary
- Department of Physics, Fatima Mata National College, Kollam, Kerala, India
| | - C Yohannan Panicker
- Department of Physics, TKM College of Arts and Science, Kollam, Kerala, India.
| | - C N Kavitha
- Department of Studies in Chemistry, University of Mysore, Manasagangotri, Mysore 570 006, India
| | - H S Yathirajan
- Department of Studies in Chemistry, University of Mysore, Manasagangotri, Mysore 570 006, India
| | | | - Sandra M A Cruz
- Department of Chemistry, CICECO and TEMA-NRD, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Helena I S Nogueira
- Department of Chemistry, CICECO and TEMA-NRD, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Abdulaziz A Al-Saadi
- Department of Chemistry, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - Christian Van Alsenoy
- University of Antwerp, Chemistry Department, Universiteitsplein 1, B2610 Antwerp, Belgium
| | - Javeed Ahmad War
- INSPIRE Fellow, Department of Chemistry, Dr. H.S. Gour Central University, Sagar, M.P. 470003, India
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9
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Chidan Kumar CS, Panicker CY, Fun HK, Mary YS, Harikumar B, Chandraju S, Quah CK, Ooi CW. Molecular structure, FT-IR, first order hyperpolarizability, NBO analysis, HOMO and LUMO analysis of 2-(4-chlorophenyl)-2-oxoethyl 3-methylbenzoate by HF and density functional methods. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 128:327-336. [PMID: 24691363 DOI: 10.1016/j.saa.2014.02.185] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2013] [Revised: 02/23/2014] [Accepted: 02/25/2014] [Indexed: 06/03/2023]
Abstract
2-(4-Chlorophenyl)-2-oxoethyl 3-methylbenzoate is synthesized by reacting 4-chlorophenacyl bromide with 2-methylbenzoic acid using a slight excess of potassium or sodium carbonate in DMF medium at room temperature. The structure of the compound was confirmed by IR and single-crystal X-ray diffraction studies. FT-IR spectrum of 2-(4-chlorophenyl)-2-oxoethyl-3-nitrobenzoate was recorded and analyzed. The crystal structure is also described. The vibrational wavenumbers were computed using HF and DFT methods and are assigned with the help of potential energy distribution method. The first hyperpolarizability and infrared intensities are also reported. The geometrical parameters of the title compound obtained from XRD studies are in agreement with the calculated (DFT) values. The stability of the molecule arising from hyper-conjugative interaction and charge delocalization has been analyzed using NBO analysis. The HOMO and LUMO analysis are used to determine the charge transfer within the molecule. MEP was performed by the DFT method.
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Affiliation(s)
- C S Chidan Kumar
- X-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
| | - C Yohannan Panicker
- Department of Physics, TKM College of Arts and Science, Kollam, Kerala, India.
| | - Hoong-Kun Fun
- X-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia; Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia.
| | - Y Sheena Mary
- Department of Physics, Fatima Mata National College, Kollam, Kerala, India
| | - B Harikumar
- Department of Chemistry, TKM College of Arts and Science, Kollam, Kerala, India
| | - S Chandraju
- Department of Sugar Technology and Chemistry, Sir M. Visvesvaraya PG Center, University of Mysore, Tubinakere, Mandya 571402, India
| | - Ching Kheng Quah
- X-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
| | - Chin Wei Ooi
- X-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
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10
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Chidan Kumar CS, Panicker CY, Fun HK, Mary YS, Harikumar B, Chandraju S, Quah CK, Ooi CW. FT-IR, molecular structure, first order hyperpolarizability, HOMO and LUMO analysis, MEP and NBO analysis of 2-(4-chlorophenyl)-2-oxoethyl 3-nitrobenzoate. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 126:208-219. [PMID: 24607470 DOI: 10.1016/j.saa.2014.01.145] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2013] [Revised: 01/17/2014] [Accepted: 01/27/2014] [Indexed: 06/03/2023]
Abstract
2-(4-Chlorophenyl)-2-oxoethyl 3-nitrobenzoate is synthesized by reacting 4-chlorophenacyl bromide with 3-nitrobenzoic acid using a slight excess of potassium or sodium carbonate in DMF medium at room temperature. The structure of the compound was confirmed by IR and single-crystal X-ray diffraction studies. FT-IR spectrum of 2-(4-chlorophenyl)-2-oxoethyl 3-nitrobenzoate was recorded and analyzed. The crystal structure is also described. The vibrational wavenumbers were computed using HF and DFT methods and are assigned with the help of potential energy distribution method. The first hyperpolarizability and infrared intensities are also reported. The geometrical parameters of the title compound obtained from XRD studies are in agreement with the calculated (DFT) values. The stability of the molecule arising from hyper-conjugative interaction and charge delocalization has been analyzed using NBO analysis. The HOMO and LUMO analysis are used to determine the charge transfer within the molecule. MEP was performed by the DFT method.
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Affiliation(s)
- C S Chidan Kumar
- X-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
| | - C Yohannan Panicker
- Department of Physics, TKM College of Arts and Science, Kollam, Kerala, India.
| | - Hoong-Kun Fun
- X-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia; Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia.
| | - Y Sheena Mary
- Department of Physics, Fatima Mata National College, Kollam, Kerala, India
| | - B Harikumar
- Department of Chemistry, TKM College of Arts and Science, Kollam, Kerala, India
| | - S Chandraju
- Department of Sugar Technology and Chemistry, Sir M. Visvesvaraya PG Center, University of Mysore, Tubinakere, Mandya 571402, India
| | - Ching Kheng Quah
- X-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
| | - Chin Wei Ooi
- X-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
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11
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Mary YS, Jojo PJ, Van Alsenoy C, Kaur M, Siddegowda MS, Yathirajan HS, Nogueira HIS, Cruz SMA. Vibrational spectroscopic (FT-IR, FT-Raman, SERS) and quantum chemical calculations of 3-(10,10-dimethyl-anthracen-9-ylidene)-N,N,N-trimethylpropanaminiium chloride (Melitracenium chloride). SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2013; 120:370-380. [PMID: 24200651 DOI: 10.1016/j.saa.2013.10.021] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2013] [Revised: 09/29/2013] [Accepted: 10/02/2013] [Indexed: 06/02/2023]
Abstract
FT-IR, FT-Raman spectra of Melitracenium chloride were recorded and analyzed. SERS spectrum was recorded in silver colloid. The vibrational wavenumbers were computed using DFT quantum chemical calculations. The data obtained from wavenumber calculations are used to assign vibrational bands obtained in infrared and Raman spectra as well as in SERS of the studied molecule. Potential energy distribution was done using GAR2PED program. The geometrical parameters (SDD) of the title compound are in agreement with the XRD results. The presence anthracene ring modes in the SERS spectrum suggest a tilted orientation with respect to the metal surface. The methyl groups in the title molecule are also close to the metal surface. The first hyperpolarizability, NBO analysis and molecular electrostatic potential results are also reported.
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Affiliation(s)
- Y Shyma Mary
- Department of Physics, Bharathiar University, Coimbatore, Tamilnadu, India; Department Physics, Fatima Mata National College, Kollam, Kerala, India.
| | - P J Jojo
- Department Physics, Fatima Mata National College, Kollam, Kerala, India
| | | | - Manpreet Kaur
- Department of Studies in Chemistry, University of Mysore, Manasagangotri, Mysore, India
| | - M S Siddegowda
- Department of Studies in Chemistry, University of Mysore, Manasagangotri, Mysore, India
| | - H S Yathirajan
- Department of Studies in Chemistry, University of Mysore, Manasagangotri, Mysore, India
| | - Helena I S Nogueira
- Chemistry Department, CICECO and TEMA-NRD, University of Aveiro, 3810-193 Aveiro, Portugal
| | - Sandra M A Cruz
- Chemistry Department, CICECO and TEMA-NRD, University of Aveiro, 3810-193 Aveiro, Portugal
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Baraldi C, Freguglia G, Tinti A, Sparta M, Alexandrova AN, Gamberini MC. IR, Raman and SERS spectra of propantheline bromide. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2013; 103:1-10. [PMID: 23228825 DOI: 10.1016/j.saa.2012.10.070] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2011] [Revised: 08/06/2012] [Accepted: 10/27/2012] [Indexed: 06/01/2023]
Abstract
The two known propantheline bromide polymorphs (form I and form II) were studied and characterized by a multianalytical approach. In the present work, the identification of propantheline bromide polymorphic forms through vibrational IR spectroscopies are presented and for the first time Raman microscopy and hot stage Raman microscopy (HSRM) studies are reported. Finally, quantum mechanical calculations were performed. For assisting the assignment of the experimental picks, the two IR spectra of the most and least stable representatives of a set of 56 conformers are calculated and studied. DSC thermograms data, are also reported. The surface enhanced Raman scattering (SERS) spectrum was also recorded in a silver colloid; it could be inferred that propantheline bromide is adsorbed on silver colloid through the oxygen atom with the molecular plane perpendicular to the metal surface.
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Affiliation(s)
- C Baraldi
- Department of Pharmaceutical Sciences, Institute of Pharmacy, University of Modena and Reggio Emilia, via Campi n. 183, 41100 Modena, Italy
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Arjunan V, Raj A, Santhanam R, Marchewka MK, Mohan S. Structural, vibrational, electronic investigations and quantum chemical studies of 2-amino-4-methoxybenzothiazole. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2013; 102:327-340. [PMID: 23220675 DOI: 10.1016/j.saa.2012.09.076] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2012] [Revised: 09/18/2012] [Accepted: 09/22/2012] [Indexed: 06/01/2023]
Abstract
Extensive vibrational investigations of 2-amino-4-methoxybenzothiazole have been carried out with FTIR and FT-Raman spectral techniques. The electronic structure of the molecule has been analysed by UV-Visible and NMR spectroscopies. The DFT studies were carried out with B3LYP and HF methods utilising 6-31G(d,p), 6-311++G(d,p) and cc-pVDZ basis sets to determine the structural, thermodynamical, vibrational, electronic characteristics of the compound and also to understand the electronic and steric influence of the methoxy amino groups on the skeletal frequencies. The mixing of the fundamental modes was determined with the help of total energy distribution (TED). The energies of the frontier molecular orbitals have also been determined. The kinetic and thermodynamic stability and chemical hardness of the molecule have been determined. Complete NBO analysis was also carried out to find out the intramolecular electronic interactions and their stabilisation energy. (1)H and (13)C NMR chemical shifts and the electronic transitions of the molecule are also discussed.
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Affiliation(s)
- V Arjunan
- Department of Chemistry, Kanchi Mamunivar Centre for Post-Graduate Studies, Puducherry 605 008, India.
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Sheena Mary Y, Raju K, Bolelli TE, Yildiz I, Nogueira HI, Granadeiro CM, Alseony CV. FT-IR, FT-Raman, surface enhanced Raman scattering and computational study of 2-(p-fluorobenzyl)-6-nitrobenzoxazole. J Mol Struct 2012. [DOI: 10.1016/j.molstruc.2011.12.042] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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