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Agrawal M, Deval V, Gupta A, Sangala BR, Prabhu SS. Evaluation of structure-reactivity descriptors and biological activity spectra of 4-(6-methoxy-2-naphthyl)-2-butanone using spectroscopic techniques. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2016; 167:142-156. [PMID: 27284764 DOI: 10.1016/j.saa.2016.04.053] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2016] [Revised: 04/15/2016] [Accepted: 04/27/2016] [Indexed: 06/06/2023]
Abstract
The structure and several spectroscopic features along with reactivity parameters of the compound 4-(6-methoxy-2-naphthyl)-2-butanone (Nabumetone) have been studied using experimental techniques and tools derived from quantum chemical calculations. Structure optimization is followed by force field calculations based on density functional theory (DFT) at the B3LYP/6-311++G(d,p) level of theory. The vibrational spectra have been interpreted with the aid of normal coordinate analysis. UV-visible spectrum and the effect of solvent have been discussed. The electronic properties such as HOMO and LUMO energies have been determined by TD-DFT approach. In order to understand various aspects of pharmacological sciences several new chemical reactivity descriptors - chemical potential, global hardness and electrophilicity have been evaluated. Local reactivity descriptors - Fukui functions and local softnesses have also been calculated to find out the reactive sites within molecule. Aqueous solubility and lipophilicity have been calculated which are crucial for estimating transport properties of organic molecules in drug development. Estimation of biological effects, toxic/side effects has been made on the basis of prediction of activity spectra for substances (PASS) prediction results and their analysis by Pharma Expert software. Using the THz-TDS technique, the frequency-dependent absorptions of NBM have been measured in the frequency range up to 3THz.
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Affiliation(s)
- Megha Agrawal
- Department of Applied Physics, Faculty of Engineering & Technology, M. J. P. Rohilkhand University, Bareilly, India
| | - Vipin Deval
- Department of Applied Physics, Faculty of Engineering & Technology, M. J. P. Rohilkhand University, Bareilly, India
| | - Archana Gupta
- Department of Applied Physics, Faculty of Engineering & Technology, M. J. P. Rohilkhand University, Bareilly, India.
| | | | - S S Prabhu
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai, India
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Tirgir F, Sabzalian MR, Moghadam G. Fabrication and DFT structure calculations of novel biodegredable diphenolic monomer containing D-4-hydroxyphenylglycine moiety as biologically active substituent: compression with toxic industrial bisphenol-A. Des Monomers Polym 2015. [DOI: 10.1080/15685551.2015.1012619] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022] Open
Affiliation(s)
- Farhang Tirgir
- Faculty of Science, Department of Chemistry, Islamic Azad University, Shahrekord Branch, Shahrekord, Iran
- Young Researchers and Elits Club, Islamic Azad University, Shahrekord Branch, Shahrekord, Iran
| | - Mohammad R. Sabzalian
- Department of Agronomy and Plant Breeding, College of Agriculture, Isfahan University of Technology, Isfahan, 84156-83111, I.R. Iran
| | - Ghasem Moghadam
- Young Researchers and Elits Club, Islamic Azad University, Shahrekord Branch, Shahrekord, Iran
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Raj RK, Gunasekaran S, Gnanasambandan T, Seshadri S. Combined spectroscopic and DFT studies on 6-bromo-4-chloro-3-formyl coumarin. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 139:505-514. [PMID: 25576949 DOI: 10.1016/j.saa.2014.12.024] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2014] [Revised: 11/16/2014] [Accepted: 12/09/2014] [Indexed: 06/04/2023]
Abstract
The FTIR and FT-Raman spectra of 6-bromo-4-chloro-3-formyl coumarin (6B4C3FC) have been recorded in the region 4000-400 and 4000-100 cm(-1), respectively. The optimized geometry, frequency and intensity of the vibrational bands were obtained by the density functional theory (DFT) using 6-31G(d,p) basis set. The harmonic vibrational frequencies were scaled and compared with experimental values. The observed and the calculated frequencies were found to be in good agreement. The UV-Visible spectrum was also recorded and compared with the theoretical values. The calculated HOMO and LUMO energies show that charge transfer occurs within molecule. The first order hyperpolarizability (β0) of 6B4C3FC is 21 times greater than that of urea. Stability of the molecule arising from hyperconjugative interactions, charge delocalization have been analyzed using natural bond orbital (NBO) analysis. Information about the charge density distribution of the molecule and its chemical reactivity has been obtained by mapping molecular electrostatic potential surface. In addition, the non-linear optical properties were discussed from the dipole moment values and the excitation wavelength in the UV-Visible region.
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Affiliation(s)
- R K Raj
- Department of Physics, SCSVMV University, Enathur, Kanchipuram 631561, India; Department of Physics, Pachaiyappa's College for Men, Kanchipuram 631 503, India.
| | - S Gunasekaran
- Research & Development, St. Peter's University, Avadi, Chennai 600 054, India
| | - T Gnanasambandan
- Department of Physics, Pallavan College of Engineering, Kanchipuram 631 502, India
| | - S Seshadri
- Department of Physics, L.N. Govt. Arts College, Ponneri, India
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John Xavier R, Dinesh P. A study of the molecular, vibrational, electronic and quantum chemical investigation of 2-methyl-1-vinylimidazole. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 136 Pt C:1569-1581. [PMID: 25459718 DOI: 10.1016/j.saa.2014.10.050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2014] [Revised: 10/01/2014] [Accepted: 10/15/2014] [Indexed: 06/04/2023]
Abstract
The spectroscopic properties of 2-methyl-1-vinylimidazole (abbreviated as 2M1VIM) were examined by FT-IR, FT-Raman and NMR techniques. FT-IR and FT-Raman spectra were recorded in the region 4000-400cm(-1) and 3500-50cm(-1), respectively. The (1)H and (13)C NMR spectra were recorded in CDCl3. The structural and spectroscopic data of the molecule in the ground state were calculated by using density functional theory (DFT) employing B3LYP and LSDA methods with 6-311++G(d,p) basis set. The geometry of the molecule was fully optimized, vibrational spectra were calculated and fundamental vibration were assigned on the basis of potential energy distribution (PED) of the vibrational modes calculated with scaled quantum mechanical (SQM) method. The optimized structure of the compound was interpreted and compared with the reported experimental values. The observed vibrational ware numbers, absorption wavelengths and chemical shifts were compared with calculated values. The calculated HOMO and LUMO energies show that charge transfer occur within the molecule. As a result, the optimized geometry, and calculated spectroscopic data show a good agreement with the experimental results.
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Affiliation(s)
- R John Xavier
- Department of Physics, Periyar EVR College (Autonomous), Tiruchirappalli 620 023, India.
| | - P Dinesh
- Department of Physics, Periyar EVR College (Autonomous), Tiruchirappalli 620 023, India
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Alcolea Palafox M, Bhat D, Goyal Y, Ahmad S, Hubert Joe I, Rastogi VK. FT-IR and FT-Raman spectra, MEP and HOMO-LUMO of 2,5-dichlorobenzonitrile: DFT study. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 136 Pt B:464-472. [PMID: 25448947 DOI: 10.1016/j.saa.2014.09.058] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2014] [Revised: 09/11/2014] [Accepted: 09/18/2014] [Indexed: 06/04/2023]
Abstract
The experimental FT-IR and FT-Raman spectra of 2,5-dichlorobenzonitrile molecule were recorded at room temperature, and the results compared with quantum chemical theoretical values using MP2 and DFT methods. Molecular geometry, vibrational wavenumbers and thermodynamic parameters were calculated. With the help of specific scaling procedures for the computed wavenumbers, the experimentally observed FTIR and FT-Raman bands were analyzed and assigned to different normal modes of the molecule. Most of the modes have wavenumbers in the expected range and the error obtained was in general very low. Several general conclusions were deduced. The NBO analysis has been done and Molecular Electrostatic Potential (MEP) has been plotted.
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Affiliation(s)
- M Alcolea Palafox
- Departamento de Química-Física I, Facultad de Ciencias Químicas, Universidad Complutense, Madrid 28040, Spain.
| | - Daisy Bhat
- R.D. Foundation Group of Institutions, NH-58, Kadrabad, Modinagar (Ghaziabad), India
| | - Yasha Goyal
- R.D. Foundation Group of Institutions, NH-58, Kadrabad, Modinagar (Ghaziabad), India
| | - Shabbir Ahmad
- Department of Physics, Aligarh Muslim University, Aligarh, India
| | - I Hubert Joe
- Department of Physics, Mar Ivanios College, Thiruvananthapuram 6959 015, Kerala, India
| | - V K Rastogi
- R.D. Foundation Group of Institutions, NH-58, Kadrabad, Modinagar (Ghaziabad), India; Indian Spectroscopy Society, KC 68/1, Old Kavinagar, Ghaziabad 201 002, India.
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Agarwal P, Bee S, Gupta A, Tandon P, Rastogi VK, Mishra S, Rawat P. Quantum chemical study on influence of intermolecular hydrogen bonding on the geometry, the atomic charges and the vibrational dynamics of 2,6-dichlorobenzonitrile. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2013; 121:464-482. [PMID: 24287056 DOI: 10.1016/j.saa.2013.10.104] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2013] [Revised: 10/23/2013] [Accepted: 10/31/2013] [Indexed: 06/02/2023]
Abstract
FT-IR (4000-400 cm(-1)) and FT-Raman (4000-200 cm(-1)) spectral measurements on solid 2,6-dichlorobenzonitrile (2,6-DCBN) have been done. The molecular geometry, harmonic vibrational frequencies and bonding features in the ground state have been calculated by density functional theory at the B3LYP/6-311++G (d,p) level. A comparison between the calculated and the experimental results covering the molecular structure has been made. The assignments of the fundamental vibrational modes have been done on the basis of the potential energy distribution (PED). To investigate the influence of intermolecular hydrogen bonding on the geometry, the charge distribution and the vibrational spectrum of 2,6-DCBN; calculations have been done for the monomer as well as the tetramer. The intermolecular interaction energies corrected for basis set superposition error (BSSE) have been calculated using counterpoise method. Based on these results, the correlations between the vibrational modes and the structure of the tetramer have been discussed. Molecular electrostatic potential (MEP) contour map has been plotted in order to predict how different geometries could interact. The Natural Bond Orbital (NBO) analysis has been done for the chemical interpretation of hyperconjugative interactions and electron density transfer between occupied (bonding or lone pair) orbitals to unoccupied (antibonding or Rydberg) orbitals. UV spectrum was measured in methanol solution. The energies and oscillator strengths were calculated by Time Dependent Density Functional Theory (TD-DFT) and matched to the experimental findings. TD-DFT method has also been used for theoretically studying the hydrogen bonding dynamics by monitoring the spectral shifts of some characteristic vibrational modes involved in the formation of hydrogen bonds in the ground and the first excited state. The (13)C nuclear magnetic resonance (NMR) chemical shifts of the molecule were calculated by the Gauge independent atomic orbital (GIAO) method and compared with experimental results. Standard thermodynamic functions have been obtained and changes in thermodynamic properties on going from monomer to tetramer have been presented.
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Affiliation(s)
- Parag Agarwal
- Department of Physics, Lucknow University, Lucknow, India
| | - Saba Bee
- Department of Applied Physics, Faculty of Engineering & Technology, M.J.P. Rohilkhand University, Bareilly, India
| | - Archana Gupta
- Department of Applied Physics, Faculty of Engineering & Technology, M.J.P. Rohilkhand University, Bareilly, India.
| | - Poonam Tandon
- Department of Physics, Lucknow University, Lucknow, India
| | - V K Rastogi
- Aryan Institute of Technology, Ghaziabad, India
| | - Soni Mishra
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore, India
| | - Poonam Rawat
- Department of Chemistry, Lucknow University, Lucknow, India
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Arjunan V, Devi L, Remya P, Mohan S. A new look into conformational, vibrational and electronic structure analysis of 3,4-dimethoxybenzonitrile. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2013; 113:302-313. [PMID: 23743036 DOI: 10.1016/j.saa.2013.04.116] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2013] [Revised: 04/22/2013] [Accepted: 04/24/2013] [Indexed: 06/02/2023]
Abstract
The FTIR and FT-Raman spectra of 3,4-dimethoxybenzonitrile (34DMBN) have been analysed. Quantum chemical studies were performed with B3LYP method using 6-311++G(d,p), 6-31G(d,p) and cc-pVTZ basis sets. The electron donating effect of -OCH3 and electron withdrawing effect of -C≡N groups on the ring parameters were thoroughly analysed. The structural parameters, energies, thermodynamic properties, vibrational frequencies and the NBO charges of 34DMBN were determined. The (1)H and (13)C chemical shifts with respect to TMS were investigated and also calculated theoretically using the gauge independent atomic orbital method and compared with the experimental data. The delocalisation energy of different types of bonding interactions was investigated.
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Affiliation(s)
- V Arjunan
- Department of Chemistry, Kanchi Mamunivar Centre for Post-Graduate Studies, Puducherry 605 008, India.
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