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Shanmugapriya N, Balachandran V, Revathi B, Narayana B, Salian VV, Vanasundari K, Sivakumar C. Quantum chemical calculation, performance of selective antimicrobial activity using molecular docking analysis, RDG and experimental (FT-IR, FT-Raman) investigation of 4-[{2-[3-(4-chlorophenyl)-5-(4-propan-2-yl) phenyl)-4, 5-dihydro- 1H- pyrazol-1-yl]-4-oxo-1, 3- thiazol-5(4H)-ylidene} methyl] benzonitrile. Heliyon 2021; 7:e07634. [PMID: 34381897 PMCID: PMC8339246 DOI: 10.1016/j.heliyon.2021.e07634] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2020] [Revised: 12/27/2020] [Accepted: 07/19/2021] [Indexed: 11/29/2022] Open
Abstract
The research received a great deal of worldwide attention due to the nature of interpretation before the experimental process. Based on the systematic process the structure of thiazole -pyrazole compound 4-[{2-[3-(4-chlorophenyl)-5-(4-propan-2-yl) phenyl)-4, 5-dihydro- 1H- pyrazol-1-yl]-4-oxo-1, 3- thiazol-5(4H)-ylidene} methyl] benzonitrile [CPTBN] was investigated. In the first level, the spectral statistics on experimental FT-IR and FT- Raman was reported. At the next level, geometrical parameters was theoretically acquired from density functional theory (DFT) using B3LPY/6-31G and 6-311G basis set. The computed Wavenumber were collected and compared with the experimental data. The vibrational modes were interpreted in terms of potential energy distribution (PED) results. The FMO, MEP, and NBO analysis further validated the electrophilic and nucleophilic interaction in the molecular systems. Two grams-positive bacteria: staphylococcus aureus, Bacillus subtilis and two gram-negative bacteria: Esherichia coli, Pseudomonas aeruginosa was performed for antibacterial activity. Two fungal strain Candida albicans and Aspergillus Niger was carried out against a ligand using anti-fungal activity. The molecular docking analysis explores the antimicrobial and selective potential inhibitory nature of the binding molecule. Besides, RDG and ELF analysis were also performed to show the nature of interactions between the molecule.
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Affiliation(s)
- N. Shanmugapriya
- Centre for Research, Department of Physics, Arignar Anna Government Arts College (Affiliated to Bharathidasan University), Tiruchirappalli, Musiri, 621 211, India
| | - V. Balachandran
- Centre for Research, Department of Physics, Arignar Anna Government Arts College (Affiliated to Bharathidasan University), Tiruchirappalli, Musiri, 621 211, India
| | - B. Revathi
- Centre for Research, Department of Physics, Arignar Anna Government Arts College (Affiliated to Bharathidasan University), Tiruchirappalli, Musiri, 621 211, India
| | - B. Narayana
- Department of Studies in Chemistry, Mangalore University, Mangalagangotri, 574 199, India
| | - Vinutha V. Salian
- Department of Studies in Chemistry, Mangalore University, Mangalagangotri, 574 199, India
| | - K. Vanasundari
- Centre for Research, Department of Physics, Arignar Anna Government Arts College (Affiliated to Bharathidasan University), Tiruchirappalli, Musiri, 621 211, India
| | - C. Sivakumar
- Centre for Research, Department of Physics, Arignar Anna Government Arts College (Affiliated to Bharathidasan University), Tiruchirappalli, Musiri, 621 211, India
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Jet-cooled spectroscopy of the isomeric chloro-p-xylyl radicals in a corona-excited supersonic expansion. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2018.11.045] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Molecular dynamic simulations, ALIE surface, Fukui functions geometrical, molecular docking and vibrational spectra studies of tetra chloro p and m -xylene. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.06.001] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Parsaee Z, Karachi N, Razavi R. Ultrasound assisted fabrication of a novel optode base on a triazine based Schiff base immobilized on TEOS for copper detection. ULTRASONICS SONOCHEMISTRY 2018; 47:36-46. [PMID: 29908605 DOI: 10.1016/j.ultsonch.2018.04.007] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2017] [Revised: 03/26/2018] [Accepted: 04/17/2018] [Indexed: 06/08/2023]
Abstract
This work introduces novel selective and sensitive optical sensor based on a nano sized triazine based Schiff base (H2L) immbolized on a transparent glass substrate through the sol-gel process to detection of copper (II) ions in aqueous solutions. This sensor can determine the copper (II) in the range of 8.54 × 10-8-1.0 × 10-5 mol L-1 with a low detection limit of 1.53 × 10-8 mol L-1. The optimized geometry of H2L and its copper complex was obtained based on DFT/B3LYP levels of theory with B3LYP/6-311 + G(d,p) and LANL2DZ/6-311 + G(d,p) basis sets respectively. The calculated electronic properties of them including the molecular orbital, Mulliken population analysis, contour of electrostatic potential, and molecular electrostatic potential map confirmed the behavior of the sensor. Some advantage of the fabricated sensor such as high selectivity, sensitivity, short response time, easy production, fast regeneration, low cost, being portable and user friendly can make it a good choice to detection of Cu(II) ion in various application. The suggested sensor was revealed excellent sensitivity in the natural samples that confirmed by Inductively Coupled Plasma-Mass (ICP) spectrometry method.
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Affiliation(s)
- Zohreh Parsaee
- Elite Club, Bushehr Branch, Islamic Azad University, Bushehr, Iran.
| | - Nima Karachi
- Department of Chemistry, Islamic Azad University, Marvdasht Branch, Marvdasht, Iran
| | - Razieh Razavi
- Department of Chemistry, Faculty of Science, University of Jiroft, Jiroft, Iran
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Parsaee Z, Haratipour P, Lariche MJ, Vojood A. A novel high performance nano chemosensor for copper (II) ion based on an ultrasound-assisted synthesized diphenylamine-based Schiff base: Design, fabrication and density functional theory calculations. ULTRASONICS SONOCHEMISTRY 2018; 41:337-349. [PMID: 29137760 DOI: 10.1016/j.ultsonch.2017.09.054] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2017] [Revised: 09/28/2017] [Accepted: 09/29/2017] [Indexed: 06/07/2023]
Abstract
A novel high selective colorimetric chemosensor was introduced based on a nano diphenyl-based Schiff base (H2L), 2,2'-((1E,1'E)-(((hexylazanediyl)bis(4,1-phenylene))bis(methanylylidene))bis(azanylylidene))bis(4-methylphenol) that synthesized using sonochemical method. H2L was characterized by FT-IR, MS, TGA, 1H NMR, 13C NMR, SEM and elemental analysis techniques, then fabricated as the portable strips for sensing copper (II) ions in aqueous media. The binding interaction between H2L and various metal ions was investigated by UV-Vis spectroscopic that showed favorable coordination toward Cu2+ ion. H2L exhibited binding-induced color changes from yellow to pink and practically no interference in the presence of other metal ions, i.e., Cr2+, Mn2+, Fe2+, Co2+, Ni2+, Zn2+, Cd2+, Hg2+, Pb2+, Mg2+ and Ca2+. The chemsensor showd the color change from yellow to pink in presence of copper (II) ion in aqueous media due to binging of H2L and Cu (II). This sensor can determine the copper (II) at in the rang of 7.5 × 10-8-1.8 × 10-5 mol L-1 with a correlation equation: Absorbance = 0.0450[Cu2+] × 10-6 + 0.71 and R2 = 0.975 and low detection limit of 1.89 × 10-8 mol L-1. Density functional theory (DFT) calculations were carried out at the B3LYP levels of theory with B3LYP/6-311+G(d,p) and LANL2DZ/6-311+G(d,p) basis sets for chemosensor and its copper complex respectively. The optimized geometry, harmonic vibrational frequencies, 1H NMR and 13C NMR chemical, Molecular orbital (M.O.), Mulliken population analysis (MPA), contour of Electrostatic Potential (ESP) and Molecular Electrostatic Potential (MEP) map of H2L were calculated which show good agreement with behavior of sensor for detection of Cu2+ ion.
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Affiliation(s)
- Zohreh Parsaee
- Young Researchers and Elite Club, Bushehr Branch, Islamic Azad University, Bushehr, Iran.
| | - Pouya Haratipour
- Department of Chemistry, Sharif University of Technology, Tehran, Iran; Universal Scientific Education and Research Network (USERN), Los Angeles, CA, USA
| | | | - Arash Vojood
- Young Researchers and Elite Club, Ardabil Branch, Islamic Azad University, Ardabil, Iran
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Vanasundari K, Balachandran V, Kavimani M, Narayana B. Molecular docking, vibrational, structural, electronic and optical studies of {4 – (2, 6) dichlorophenyl amino 2 – methylidene 4 – oxobutanoic acid and 4- (2, 5)} dichlorophenyl amino 2 – methylidene 4 – oxobutanoic acid – A comparative study. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2017.11.002] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Venkatesh G, Govindaraju M, Kamal C, Vennila P, Kaya S. Structural, electronic and optical properties of 2,5-dichloro-p-xylene: experimental and theoretical calculations using DFT method. RSC Adv 2017. [DOI: 10.1039/c6ra25535c] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The vibrational spectra including FT-IR and FT-Raman for 2,5-dichloro-p-xylene (DCPX) have been recorded.
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Affiliation(s)
- G. Venkatesh
- R&D Centre
- Bharathiar University
- Coimbatore-641 046
- India
| | - M. Govindaraju
- Department of Chemistry
- Arignar Anna Government Arts College
- Namakkal-638 052
- India
| | - C. Kamal
- Department of Chemistry
- VSA Group of Institutions
- Salem
- India
| | - P. Vennila
- Department of Chemistry
- Thiruvalluvar Government Arts College
- Rasipuram-638 052
- India
| | - S. Kaya
- Department of Chemistry
- Cumhuriyet University
- Sivas-58140
- Turkey
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Karakaya M, Sert Y, Kürekçi M, Eskiyurt B, Çırak Ç. Theoretical and experimental investigations on vibrational and structural properties of tolazamide. J Mol Struct 2015. [DOI: 10.1016/j.molstruc.2015.04.028] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Sert Y, Karakaya M, Çırak Ç, Eskiyurt B, Kürekçi M. Structural optimization and vibrational analysis of an antidiabetic drug: tolbutamide. J Sulphur Chem 2015. [DOI: 10.1080/17415993.2015.1050397] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Sheela GE, Manimaran D, Hubert Joe I, Rahim S, Jothy VB. Structure and nonlinear optical property analysis of L-Methioninium oxalate: a DFT approach. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 143:40-48. [PMID: 25710113 DOI: 10.1016/j.saa.2015.02.038] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2014] [Revised: 02/02/2015] [Accepted: 02/06/2015] [Indexed: 06/04/2023]
Abstract
Infrared and FT-Raman spectra of the nonlinear optical material l-Methioninium Oxalate were recorded and analyzed. The optimized geometry, first-order hyperpolarizability and harmonic vibrational wavenumbers were calculated with the help of density functional theory method. The detailed interpretation of the vibrational spectra was carried out with the aid of normal coordinate analysis followed by scaled quantum mechanical force field methodology. Stability of the molecule arising from hyperconjugative interactions leading to its nonlinear optical activity and charge delocalization were analyzed using natural bond orbital technique. Mulliken atomic charge and molecular electrostatic potential are also predicted. HOMO-LUMO energy gap value suggests the possibility of charge transfer within the molecule. The thermodynamic properties at different temperatures are also calculated.
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Affiliation(s)
- G Edwin Sheela
- Department of Physics, Muslim Arts College, Thiruvithancode 629 174, Tamil Nadu, India; Department of Physics, Women's Christian College, Nagercoil 629 001, Tamil Nadu, India
| | - D Manimaran
- Centre for Molecular and Biophysics Research, Department of Physics, Mar Ivanios College, Thiruvananthapuram 695 015, Kerala, India
| | - I Hubert Joe
- Centre for Molecular and Biophysics Research, Department of Physics, Mar Ivanios College, Thiruvananthapuram 695 015, Kerala, India.
| | - Sherifa Rahim
- Department of Chemistry, St. John's College, Anchal, Kollam 691 306, Kerala, India
| | - V Bena Jothy
- Department of Physics, Women's Christian College, Nagercoil 629 001, Tamil Nadu, India
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Kose E, Atac A, Karabacak M, Nagabalasubramanian PB, Asiri AM, Periandy S. FT-IR and FT-Raman, NMR and UV spectroscopic investigation and hybrid computational (HF and DFT) analysis on the molecular structure of mesitylene. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2013; 116:622-634. [PMID: 23978748 DOI: 10.1016/j.saa.2013.07.070] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2013] [Revised: 07/08/2013] [Accepted: 07/25/2013] [Indexed: 06/02/2023]
Abstract
The spectroscopic properties of mesitylene were investigated by FT-IR, FT-Raman, UV, (1)H and (13)C NMR techniques. The geometrical parameters and energies have been obtained from density functional theory (DFT) B3LYP method and Hartree-Fock (HF) method with 6-311++G(d,p) and 6-311G(d,p) basis sets calculations. The geometry of the molecule was fully optimized, vibrational spectra were calculated and fundamental vibrations were assigned on the basis of the total energy distribution (TED) of the vibrational modes, calculated with scaled quantum mechanics (SQM) method and PQS program. Total and partial density of state (TDOS and PDOS) and also overlap population density of state (OPDOS) diagrams analysis were presented. (13)C and (1)H NMR chemical shifts were calculated by using the gauge-invariant atomic orbital (GIAO) method. The electronic properties, such as excitation energies, oscillator strength, wavelengths, HOMO and LUMO energies, were performed by time-dependent density functional theory (TD-DFT) results complements with the experimental findings. The results of the calculations were applied to simulate spectra of the title compound, which show excellent agreement with observed spectra. Besides, frontier molecular orbitals (FMO), molecular electrostatic potential (MEP) and thermodynamic properties were performed. Reduced density gradient (RDG) of the mesitylene was also given to investigate interactions of the molecule.
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Affiliation(s)
- E Kose
- Department of Physics, Celal Bayar University, Manisa, Turkey.
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Karabacak M, Asiri AM, Al-Youbi AO, Qusti AH, Cinar M. Identification of structural and spectral features of synthesized cyano-stilbene dye derivatives: a comparative experimental and DFT study. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2013; 120:144-150. [PMID: 24177881 DOI: 10.1016/j.saa.2013.09.093] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2013] [Revised: 09/24/2013] [Accepted: 09/26/2013] [Indexed: 06/02/2023]
Abstract
The synthesized three dye derivatives of cyano-stilbene monomer were identified by experimental spectroscopic techniques and density functional approach. The optimized geometrical structure, vibrational and electronic transitions along with the nonlinear optical (NLO) properties of those compounds were presented in this study. The vibrational spectra of investigated compounds were recorded in solid state with FT-IR and FT-Raman spectrometry in the range of 4000-400 cm(-1) and 3600-50 cm(-1), respectively. The theoretical ground state equilibrium conformations and vibrational wavenumbers were carried out by using density functional method with 6-311G(d,p) basis set. Assignments of the fundamental vibrational modes were examined on the basis of the measured data and total energy distribution (TED) of the vibrational modes, calculated with scaled quantum mechanical (SQM) method. The UV absorption spectra of monomers were observed in the range of 200-600 nm in chloroform, acetonitrile and toluene, and time dependent DFT method was used to obtain the electronic properties. The linear polarizability and first hyperpolarizability of the studied molecules indicates that the title compounds can be used as a good nonlinear optical material. A detailed description of spectroscopic behaviors of compounds was given based on the comparison of experimental measurements and theoretical computations.
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Affiliation(s)
- M Karabacak
- Department of Mechatronics Engineering, H.F.T. Technology Faculty, Celal Bayar University, 45400 Turgutlu, Manisa, Turkey.
| | - A M Asiri
- Center of Excellence for Advanced Materials Research (CEAMR), King Abdulaziz University, P.O. Box 80203, Jeddah 21589, Saudi Arabia; Department of Chemistry, Faculty of Science, King Abdulaziz University, P.O. Box 80203, Jeddah 21589, Saudi Arabia
| | - A O Al-Youbi
- Department of Chemistry, Faculty of Science, King Abdulaziz University, P.O. Box 80203, Jeddah 21589, Saudi Arabia
| | - A H Qusti
- Department of Chemistry, Faculty of Science, King Abdulaziz University, P.O. Box 80203, Jeddah 21589, Saudi Arabia
| | - M Cinar
- Department of Science Education, Bayburt University, 69000 Bayburt, Turkey
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