1
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Smirnova OV, Grebenyuk AG, Lobanov VV, Khalyavka TA, Shcherban ND, Permyakov VV, Scherbakov SN. Experimental and quantum-chemical studies of electronic and spectral properties of titanium dioxide, modified with tin and lanthanum. APPLIED NANOSCIENCE 2023. [DOI: 10.1007/s13204-023-02797-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
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2
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Anitha K, Nataraj A, Narayana B, Karthick T. Spectral Characteristics, DFT Exploration, Electronic Properties, Molecular Docking and Biological Activity of 2E-1-(3-Bromothiophene-2-yl)-3-(1, 3-Benzodioxol-5-yl)Prop-2-en-1-One Molecule. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2127802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/07/2022]
Affiliation(s)
- K. Anitha
- Department of Physics, SRM Institute of Science and Technology, Chennai, Tamil Nadu, India
| | - A. Nataraj
- Department of Physics, SRM Institute of Science and Technology, Chennai, Tamil Nadu, India
| | - Badiadka Narayana
- Department of Studies in Chemistry, Mangalore University, Mangalore, Karnataka, India
| | - T. Karthick
- Department of Physics, School of Electrical and Electronics Engineering, SASTRA Deemed University, Tanjavur, Tamil Nadu, India
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3
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Synthesis, experimental antimicrobial activity, theoretical vibrational analysis, quantum chemical modeling and molecular docking studies of (E)-4-(benzylideneamino)benzenesulfonamide. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133187] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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4
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Priscilla J, Arul Dhas D, Hubert Joe I, Ronaldo Anuf A. Spectroscopic Investigation, DFT Calculations, anti-Inflammatory Activity and Molecular Dynamic Simulation Study on Fagaramide Alkaloid. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2094973] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- J. Priscilla
- Department of Physics, Physics Research Centre, Nesamony Memorial Christian College, Marthandam, Kanyakumari District, Tamilnadu, India
| | - D. Arul Dhas
- Department of Physics, Physics Research Centre, Nesamony Memorial Christian College, Marthandam, Kanyakumari District, Tamilnadu, India
| | - I. Hubert Joe
- Centre for Molecular and Biophysics Research, Department of Physics, Mar Ivanios College, Thiruvananthapuram, Kerala, India
| | - A. Ronaldo Anuf
- Department of Biotechnology, Kamaraj College of Engineering and Technology, Virudhunagar, Tamilnadu, India
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Sowrirajan S, Elangovan N, Ajithkumar G, Manoj KP. (E)-4-((4-Bromobenzylidene) Amino)-N-(Pyrimidin-2-yl) Benzenesulfonamide from 4-Bromobenzaldehyde and Sulfadiazine, Synthesis, Spectral (FTIR, UV–Vis), Computational (DFT, HOMO–LUMO, MEP, NBO, NPA, ELF, LOL, RDG) and Molecular Docking Studies. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2021.2006245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- S. Sowrirajan
- Department of Chemistry, King Fahd University of Petroleum and Minerals, Kingdom of Saudi Arabia
| | - N. Elangovan
- Department of Chemistry, Arignar Anna Government Arts College (Affiliated to Bharathidasan University), Musiri, Tiruchirappalli, Tamil Nadu, India
| | - G. Ajithkumar
- Department of Chemistry, Arignar Anna Government Arts College (Affiliated to Bharathidasan University), Musiri, Tiruchirappalli, Tamil Nadu, India
| | - K. P. Manoj
- Department of Chemistry, Arignar Anna Government Arts College (Affiliated to Bharathidasan University), Musiri, Tiruchirappalli, Tamil Nadu, India
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6
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Soumya S, Joe IH. A combined experimental and quantum chemical study on molecular structure, spectroscopic properties and biological activity of anti-inflammatory Glucocorticosteroid drug, Dexamethasone. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130999] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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7
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Molecular structure, spectroscopic, quantum chemical, topological, molecular docking and antimicrobial activity of 3-(4-Chlorophenyl)-5-[4-propan-2-yl) phenyl-4, 5-dihydro-1H-pyrazol-1-yl] (pyridin-4-yl) methanone. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129286] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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8
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Investigation on spectra (UV–Vis, vibrational, NMR, HRMS), electronic structure (DFT calculations), molecular docking and antidiabetic activity of N-((benzo[d]thiazol-2-ylthio)methyl)-N-cyclohexylcyclohexanamine – A Mannich base. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128604] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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9
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Sheena Mary Y, Shyma Mary Y, Thomas R, Resmi KS, Narayana B, Samshuddin S, Sarojini BK. Spectroscopic and Theoretical Studies of Potential Anti-Inflammatory Polycyclic Aromatic Fluorophenyl Substituted Acyclic and Heterocyclic Analogues Synthesized from 4,4′-Difluorophenylchalcone. Polycycl Aromat Compd 2019. [DOI: 10.1080/10406638.2019.1699836] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- Y. Sheena Mary
- Department of Physics, Fatima Mata National College (Autonomous), Kollam, India
| | - Y. Shyma Mary
- Department of Physics, Fatima Mata National College (Autonomous), Kollam, India
| | - Renjith Thomas
- Department of Chemistry, St. Berchmans College (Autonomous), Changanassery, India
| | - K. S. Resmi
- Department of Physics, Fatima Mata National College (Autonomous), Kollam, India
| | - B. Narayana
- Department of Chemistry, Mangalore University, Mangalagangothri, India
| | - S. Samshuddin
- Department of Chemistry, Mangalore University, Mangalagangothri, India
| | - B. K. Sarojini
- Department of Industrial Chemistry, Mangalore University, Mangalagangothri, India
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10
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Mary YS, Mary YS, Thomas R, Narayana B, Samshuddin S, Sarojini BK, Armaković S, Armaković SJ, Pillai GG. Theoretical Studies on the Structure and Various Physico-Chemical and Biological Properties of a Terphenyl Derivative with Immense Anti-Protozoan Activity. Polycycl Aromat Compd 2019. [DOI: 10.1080/10406638.2019.1624974] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Y. Sheena Mary
- Department of Physics, Fatima Mata National College (Autonomous), Kollam, Kerala, India
| | - Y. Shyma Mary
- Department of Physics, Fatima Mata National College (Autonomous), Kollam, Kerala, India
| | - Renjith Thomas
- Department of Chemistry, St. Berchmans College (Autonomous), Changanassery, Kerala, India
| | - B. Narayana
- Department of Chemistry, Mangalore University, Mangalagangothri, Karnataka, India
| | - S. Samshuddin
- Department of Chemistry, Mangalore University, Mangalagangothri, Karnataka, India
- Department of Chemistry, SDM Institute of Technology, Ujire, Karnataka, India
| | - B. K. Sarojini
- Department of Industrial Chemistry, Mangalore University, Mangalagangothri, Karnataka, India
| | - Stevan Armaković
- Department of Physics, Faculty of Sciences, University of Novi Sad, Novi Sad, Serbia
| | - Sanja J. Armaković
- Department of Chemistry, Faculty of Sciences, University of Novi Sad, Novi Sad, Serbia
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11
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Trabelsi S, Issaoui N, Brandán SA, Bardak F, Roisnel T, Atac A, Marouani H. Synthesis and physic-chemical properties of a novel chromate compound with potential biological applications, bis(2-phenylethylammonium) chromate(VI). J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.02.106] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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12
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Cocrystals of pyrazinamide with p-toluenesulfonic and ferulic acids: DFT investigations and molecular docking studies. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.08.055] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
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13
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14
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Almutairi MS, Soumya S, Al-Wabli RI, Joe IH, Attia MI. Density functional theory calculations, vibration spectral analysis and molecular docking of the antimicrobial agent 6-(1,3-benzodioxol-5-ylmethyl)-5-ethyl-2-{[2-(morpholin-4-yl)ethyl] sulfanyl}pyrimidin-4(3H)-one. OPEN CHEM 2018. [DOI: 10.1515/chem-2018-0067] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
AbstractVibrational spectral analysis and quantum chemical computations based on density functional theory have been performed on the antimicrobial agent 6-(1,3-benzodioxol-5-ylmethyl)-5-ethyl-2-{[2-(morpholin- 4-yl)ethyl]sulfanyl}pyrimidin-4-(3H)-one.The equilibrium structural geometry, various bonding features and harmonic vibrational wavenumbers of the title compound have been investigated using DFT-B3LYP function at 6-311++G(d, p) basis set. The detailed interpretations of the vibrational spectra have been carried out with the aid of VEDA 4 program. The various intramolecular interactions of the title compound have been exposed by natural bond orbital analysis. The FT-IR and FT-Raman spectra of the title molecule have been recorded and analyzed. Blue-shifting of the C-H wavenumber along with a decrease in the C-H bond length attribute for the formation of the C-H...O hydrogrn bonding provide an evidence for a charge transfer interaction. Also, the distribution of natural atomic charges reflects the presence of intramolecular hydrogen bonding. The analysis of the electron density of HOMO and LUMO gives an idea of the delocalization and the low value of energy gap indicates electron transfer within the molecule. Moreover, molecular docking studies revealed the possible binding of the title molecule to different antimicrobial target proteins.
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Affiliation(s)
- Maha S. Almutairi
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O.Box 2457, Riyadh, 11451, Saudi Arabia
| | - S. Soumya
- Centre for Molecular and Biophysics Research, Department of Physics, Mar Ivanios College(Autonomous), Thiruvananthapuram-695 015, Kerala, India
| | - Reem I. Al-Wabli
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O.Box 2457, Riyadh, 11451, Saudi Arabia
| | - I. Hubert Joe
- Centre for Molecular and Biophysics Research, Department of Physics, Mar Ivanios College(Autonomous), Thiruvananthapuram-695 015, Kerala, India
| | - Mohamed I. Attia
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, P.O.Box 2457, Riyadh, 11451, Saudi Arabia
- Medicinal and Pharmaceutical Chemistry Department, Pharmaceutical and Drug Industries Research Division, National Research Centre (ID: 60014618), El Bohooth Street, Dokki, Giza, 12622, Egypt
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15
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Study on the structure, vibrational analysis and molecular docking of fluorophenyl derivatives using FT-IR and density functional theory computations. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.03.070] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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16
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Thomas R, Hossain M, Mary YS, Resmi K, Armaković S, Armaković SJ, Nanda AK, Ranjan VK, Vijayakumar G, Van Alsenoy C. Spectroscopic analysis and molecular docking of imidazole derivatives and investigation of its reactive properties by DFT and molecular dynamics simulations. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.01.021] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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17
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Hossain M, Thomas R, Mary YS, K.S.Resmi, Armaković S, Armaković SJ, Nanda AK, Vijayakumar G, Alsenoy CV. Understanding reactivity of two newly synthetized imidazole derivatives by spectroscopic characterization and computational study. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.01.029] [Citation(s) in RCA: 51] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
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18
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Yadav KK, Kumar A, Kumar A, Misra N, Brahmachari G. Structure, spectroscopic analyses (FT-IR and NMR), vibrational study, chemical reactivity and molecular docking study on 3,3'-((4-(trifluoromethyl)phenyl)methylene)bis(2-hydroxynaphthalene-1,4-dione), a promising anticancerous bis-lawsone derivative. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2017.09.095] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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19
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Atlam FM, El-Nahass MN, Bakr EA, Fayed TA. Metal complexes of chalcone analogue: Synthesis, characterization, DNA binding, molecular docking and antimicrobial evaluation. Appl Organomet Chem 2017. [DOI: 10.1002/aoc.3951] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Faten M. Atlam
- Department of Chemistry, Faculty of Science; Tanta University; 31527 Tanta Egypt
| | - Marwa N. El-Nahass
- Department of Chemistry, Faculty of Science; Tanta University; 31527 Tanta Egypt
| | - Eman A. Bakr
- Department of Chemistry, Faculty of Science; Tanta University; 31527 Tanta Egypt
| | - Tarek A. Fayed
- Department of Chemistry, Faculty of Science; Tanta University; 31527 Tanta Egypt
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20
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Benzon K, Mary YS, Varghese HT, Panicker CY, Armaković S, Armaković SJ, Pradhan K, Nanda AK, Van Alsenoy C. Spectroscopic, DFT, molecular dynamics and molecular docking study of 1-butyl-2-(4-hydroxyphenyl)-4,5-dimethyl-imidazole 3-oxide. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2016.12.100] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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21
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Methods of synthesis and physicochemical properties of 1-hydroxyimidazoles, imidazole 3-oxides, and their benzoannulated analogs. Chem Heterocycl Compd (N Y) 2017. [DOI: 10.1007/s10593-017-2030-z] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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22
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Benzon K, Sheena MY, Panicker CY, Armaković S, Armaković SJ, Pradhan K, Nanda AK, Van Alsenoy C. Studies on the synthesis, spectroscopic analysis, molecular docking and DFT calculations on 1-hydroxy-2-(4-hydroxyphenyl)-4,5-dimethyl-imidazol 3-oxide. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2016.11.021] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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23
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Menon VV, Foto E, Mary YS, Karatas E, Panicker CY, Yalcin G, Armaković S, Armaković SJ, Van Alsenoy C, Yildiz I. Vibrational spectroscopic analysis, molecular dynamics simulations and molecular docking study of 5-nitro-2-phenoxymethyl benzimidazole. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2016.09.059] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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24
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Spectroscopic characterization of 1-[3-(1 H -imidazol-1-yl)propyl]-3-phenylthiourea and assessment of reactive and optoelectronic properties employing DFT calculations and molecular dynamics simulations. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2016.09.063] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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25
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Jalaja K, Mary YS, Panicker CY, Armaković S, Armaković SJ, Sagar B, Girisha M, Yathirajan H, Van Alsenoy C. Spectroscopic characterization of 4-[2-(5-Ethylpyridin-2-yl)ethoxy]benzaldehyde oxime and investigation of its reactive properties by DFT calculations and molecular dynamics simulations. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2016.08.075] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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26
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Vibrational spectroscopic studies, Fukui functions, HOMO-LUMO, NLO, NBO analysis and molecular docking study of (E)-1-(1,3-benzodioxol-5-yl)-4,4-dimethylpent-1-en-3-one, a potential precursor to bioactive agents. J Mol Struct 2016. [DOI: 10.1016/j.molstruc.2016.07.044] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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27
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Haress NG, Govindarajan M, AL-Wabli RI, Almutairi MS, Al-Alshaikh MA, Al-Saadi AA, Attia MI. Spectroscopic (FT-IR, FT-Raman, UV, 1H and 13C NMR) profiling and theoretical calculations of (2E)-2-[3-(1H-imidazol-1-yl)-1-phenylpropylidene]hydrazinecarboxamide: An anticonvulsant agent. J Mol Struct 2016. [DOI: 10.1016/j.molstruc.2016.04.026] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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28
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Al-Alshaikh MA, Mary Y S, Panicker CY, Attia MI, El-Emam AA, Alsenoy CV. Spectroscopic investigations and molecular docking study of 3-(1H-imidazol-1-yl)-1-phenylpropan-1-one, a potential precursor to bioactive agents. J Mol Struct 2016. [DOI: 10.1016/j.molstruc.2015.12.075] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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29
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Pradhan K, Tiwary BK, Hossain M, Chakraborty R, Nanda AK. A mechanistic study of carbonyl activation under solvent-free conditions: evidence drawn from the synthesis of imidazoles. RSC Adv 2016. [DOI: 10.1039/c5ra16386b] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
An assembly of carbonyls held together by weak-bond interactions (Constitutional Dynamic Chemistry) results in bulk polarisation. Molecules participate in reactions in a cycle rather than as individual moieties leading to higher reaction rates.
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Affiliation(s)
- Kiran Pradhan
- Department of Chemistry
- University of North Bengal
- Darjeeling
- India
| | | | - Mossaraf Hossain
- Department of Chemistry
- University of North Bengal
- Darjeeling
- India
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