Ultra-high resolution near-infrared spectrum by wavelet packet transform revealing the hydrogen bond interactions

Understanding the structures and interactions in gaseous mixtures of water-alcohol by high-resolution infrared spectroscopy

Interactions of water and chemical or bio-compound have a universal concern and have been extensively studied. For spectroscopic analysis, the complexity and the low resolution of the spectra make it difficult to obtain the spectral features showing the interactions. In this work, the structures and interactions in gaseous water and water-alcohol mixtures were studied using high-resolution infrared (HR-IR) spectroscopy. The spectral features of water clusters of different sizes, including dimer, trimer, tetramer and pentamer, were observed from the measured spectra of the samples in different volume concentrations, and the interactions of water and methanol/ethanol in the mixtures were obtained. In the analysis, a method based on principal component analysis was used to separate the overlapping spectra. In water-alcohol mixtures, when water is less, water molecules tend to interact with the OH groups on the exterior of the alcohol aggregate, and with the increase of water, a water cage forms around the aggregates. Furthermore, the ratio of the molecule number of methanol in the aggregate to that of water in the cage is around 1:2.3, and the ratio for ethanol is about 1:3.2.

Rapid and accurate quantification of trypsin activity using integrated infrared and ultraviolet spectroscopy with data fusion techniques

Proteases play a crucial role in industrial enzyme formulations, with activity fluctuations significantly impacting product quality and yield. Therefore, developing a method for precise and rapid detection of protease activity is paramount. This study aimed to develop a rapid and accurate method for quantifying trypsin activity using integrated infrared (IR) and ultraviolet (UV) spectroscopy combined with data fusion techniques. The developed method evaluates the enzymatic activity of trypsin under varying conditions, including temperature, pH, and ionic strength. By comparing different data fusion methods, the study identifies the optimal model for accurate enzyme activity prediction. The results demonstrated significant improvements in predictive performance using the feature-level data fusion approach. Additionally, substituting the spectral data of the samples in the validation sets into the best prediction model resulted in a minimal residual difference between predicted and true values, further verifying the model's accuracy and reliability. This innovative approach offers a practical solution for the efficient and precise quantification of enzyme activity, with broad applications in industrial processes.

Interpretable Perturbator for Variable Selection in near-Infrared Spectral Analysis

A perturbator was developed for variable selection in near-infrared (NIR) spectral analysis based on the perturbation strategy in deep learning for developing interpretation methods. A deep learning predictor was first constructed to predict the targets from the spectra in the training set. Then, taking the output of the predictor as a reference, the perturbator was trained to derive the perturbation-positive (P+) and perturbation-negative (P-) features from the spectra. Therefore, the weight (σ) of the perturbator layer can be a criterion to evaluate the importance of the variables in the spectra. Ranking the spectral variables by the criterion, the number of the variables used in the quantitative model can be obtained through cross-validation. Three NIR data sets were used to evaluate the proposed method. The root mean squared error was found to be comparable with or superior to that obtained by the commonly used methods. Moreover, the selected spectral variables are interpretable in identifying the key spectral features related to the prediction target. Therefore, the proposed method provides not only an effective tool for optimizing quantitative model, but also an efficient way for explaining spectra of multicomponent samples.

Support vector regression for prediction of stable isotopes and trace elements using hyperspectral imaging on coffee for origin verification

The potential of using rapid and non-destructive near-infrared - hyperspectral imaging (HSI-NIR) for the prediction of an integrated stable isotope and multi-element dataset was explored for the first time with the help of support vector regression. Speciality green coffee beans sourced from three continents, eight countries, and 22 regions were analysed using a push-broom HSI-NIR (700-1700 nm), together with five isotope ratios (δ13C, δ15N, δ18O, δ2H, and δ34S) and 41 trace elements. Support vector regression with the radial basis function kernel was conducted using X as the HSI-NIR data and Y as the geochemistry markers. Model performance was evaluated using root mean squared error, coefficient of determination, and mean absolute error. Three isotope ratios (δ18O, δ2H, and δ34S) and eight elements (Zn, Mn, Ni, Mo, Cs, Co, Cd, and La) had an R2predicted 0.70 - 0.99 across all origin scales (continent, country, region). All five isotope ratios were well predicted at the country and regional levels. The wavelength regions contributing the most towards each prediction model were highlighted, including a discussion of the correlations across all geochemical parameters. This study demonstrates the feasibility of using HSI-NIR as a rapid and non-destructive method to estimate traditional geochemistry parameters, some of which are origin-discriminating variables related to altitude, temperature, and rainfall differences across origins.

Mechanism of Binding of Polyproline to Ice via Interfacial Water: An Experimental and Theoretical Study

The molecular mechanism underlying inhibition of ice growth by polyproline (PPro), a minimal antifreeze glycoprotein mimic, remains unclear. In this work, the change in the structure of water during the growth of ice in PPro solutions was investigated using a combination of near-infrared spectroscopy and molecular dynamics (MD) simulations. The results show that only high concentrations of PPro solutions can effectively inhibit ice growth, as indicated by the variation in the spectral intensity of ice with time. When PPro exhibits an antifreeze effect, the spectral intensity of hydrated water associated with PPro in a solution is weakened. The experiments and MD simulations reveal that the quantity of the interfacial water between the ice crystal and the hydrophobic groups of PPro progressively reaches a plateau. Most significantly, we present clear evidence that the stable existence of this interfacial water is critical for the antifreeze activity of PPro.