• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (4640408)   Today's Articles (187)   Subscriber (50351)
For: Albuquerque P, Mendes MV, Santos CL, Moradas-Ferreira P, Tavares F. DNA signature-based approaches for bacterial detection and identification. Sci Total Environ 2009;407:3641-51. [PMID: 19062077 DOI: 10.1016/j.scitotenv.2008.10.054] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2008] [Revised: 10/21/2008] [Accepted: 10/23/2008] [Indexed: 05/17/2023]
Number Cited by Other Article(s)
1
Barrenechea Angeles I, Nguyen NL, Greco M, Tan KS, Pawlowski J. Assigning the unassigned: A signature-based classification of rDNA metabarcodes reveals new deep-sea diversity. PLoS One 2024;19:e0298440. [PMID: 38422100 PMCID: PMC10903905 DOI: 10.1371/journal.pone.0298440] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Accepted: 01/23/2024] [Indexed: 03/02/2024]  Open
2
Gaballa A, Cheng RA, Trmcic A, Kovac J, Kent DJ, Martin NH, Wiedmann M. Development of a database and standardized approach for rpoB sequence-based subtyping and identification of aerobic spore-forming Bacillales. J Microbiol Methods 2021;191:106350. [PMID: 34710512 DOI: 10.1016/j.mimet.2021.106350] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Revised: 10/19/2021] [Accepted: 10/22/2021] [Indexed: 10/20/2022]
3
Wdowiak-Wróbel S, Marek-Kozaczuk M, Kalita M, Karaś M, Wójcik M, Małek W. Diversity and plant growth promoting properties of rhizobia isolated from root nodules of Ononis arvensis. Antonie van Leeuwenhoek 2017;110:1087-1103. [PMID: 28500544 PMCID: PMC5511607 DOI: 10.1007/s10482-017-0883-x] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/28/2016] [Accepted: 04/28/2017] [Indexed: 12/05/2022]
4
Zamberi NR, Mohamad NE, Yeap SK, Ky H, Beh BK, Liew WC, Tan SW, Ho WY, Boo SY, Chua YH, Alitheen NB. 16S Metagenomic Microbial Composition Analysis of Kefir Grain using MEGAN and BaseSpace. FOOD BIOTECHNOL 2016. [DOI: 10.1080/08905436.2016.1200987] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
5
Comparative analyses of phenotypic methods and 16S rRNA, khe, rpoB genes sequencing for identification of clinical isolates of Klebsiella pneumoniae. Antonie van Leeuwenhoek 2016;109:1029-40. [PMID: 27147066 DOI: 10.1007/s10482-016-0702-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2016] [Accepted: 04/25/2016] [Indexed: 10/21/2022]
6
Canberk S, Longatto-Filho A, Schmitt F. Molecular diagnosis of infectious diseases using cytological specimens. Diagn Cytopathol 2015;44:156-64. [PMID: 26620694 DOI: 10.1002/dc.23394] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2015] [Accepted: 11/13/2015] [Indexed: 01/02/2023]
7
Punina NV, Makridakis NM, Remnev MA, Topunov AF. Whole-genome sequencing targets drug-resistant bacterial infections. Hum Genomics 2015;9:19. [PMID: 26243131 PMCID: PMC4525730 DOI: 10.1186/s40246-015-0037-z] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2015] [Accepted: 07/03/2015] [Indexed: 01/07/2023]  Open
8
Nagamine K, Hung GC, Li B, Lo SC. DNA Sequence Signatures for Rapid Detection of Six Target Bacterial Pathogens Using PCR Assays. Microbiol Insights 2015;8:7-14. [PMID: 26279626 PMCID: PMC4515919 DOI: 10.4137/mbi.s29736] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2015] [Revised: 06/17/2015] [Accepted: 06/19/2015] [Indexed: 11/05/2022]  Open
9
Improved PCR assay for the species-specific identification and quantitation of Legionella pneumophila in water. Appl Microbiol Biotechnol 2015;99:9227-36. [PMID: 26142386 DOI: 10.1007/s00253-015-6759-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2015] [Revised: 06/02/2015] [Accepted: 06/05/2015] [Indexed: 10/23/2022]
10
Cho MS, Park DH, Namgung M, Ahn TY, Park DS. Validation and Application of a Real-time PCR Protocol for the Specific Detection and Quantification of Clavibacter michiganensis subsp. sepedonicus in Potato. THE PLANT PATHOLOGY JOURNAL 2015;31:123-31. [PMID: 26060431 PMCID: PMC4453993 DOI: 10.5423/ppj.oa.02.2015.0019] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2015] [Revised: 03/20/2015] [Accepted: 03/20/2015] [Indexed: 05/31/2023]
11
Cho MS, Joh K, Ahn TY, Park DS. Improved PCR assay for the specific detection and quantitation of Escherichia coli serotype O157 in water. Appl Microbiol Biotechnol 2014;98:7869-77. [PMID: 24903818 DOI: 10.1007/s00253-014-5855-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2014] [Revised: 05/11/2014] [Accepted: 05/23/2014] [Indexed: 10/25/2022]
12
Rapid TaqMan-based quantification of chlorophyll d-containing cyanobacteria in the genus Acaryochloris. Appl Environ Microbiol 2014;80:3244-9. [PMID: 24632258 DOI: 10.1128/aem.00334-14] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]  Open
13
Ferrario C, Borgo F, de Las Rivas B, Muñoz R, Ricci G, Fortina MG. Sequencing, characterization, and gene expression analysis of the histidine decarboxylase gene cluster of Morganella morganii. Curr Microbiol 2013;68:404-11. [PMID: 24241330 DOI: 10.1007/s00284-013-0490-7] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2013] [Accepted: 10/02/2013] [Indexed: 11/26/2022]
14
Improved PCR for identification of Pseudomonas aeruginosa. Appl Microbiol Biotechnol 2013;97:3643-51. [PMID: 23504075 DOI: 10.1007/s00253-013-4709-0] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2012] [Revised: 01/09/2013] [Accepted: 01/10/2013] [Indexed: 10/27/2022]
15
Sint D, Raso L, Traugott M. Advances in multiplex PCR: balancing primer efficiencies and improving detection success. Methods Ecol Evol 2012;3:898-905. [PMID: 23549328 PMCID: PMC3573865 DOI: 10.1111/j.2041-210x.2012.00215.x] [Citation(s) in RCA: 89] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2012] [Accepted: 04/03/2012] [Indexed: 11/29/2022]
16
Albuquerque P, Caridade CMR, Rodrigues AS, Marcal ARS, Cruz J, Cruz L, Santos CL, Mendes MV, Tavares F. Evolutionary and experimental assessment of novel markers for detection of Xanthomonas euvesicatoria in plant samples. PLoS One 2012;7:e37836. [PMID: 22655073 PMCID: PMC3359998 DOI: 10.1371/journal.pone.0037836] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2011] [Accepted: 04/25/2012] [Indexed: 02/07/2023]  Open
17
Identification of DNA signatures suitable for use in development of real-time PCR assays by whole-genome sequence approaches: use of Streptococcus pyogenes in a pilot study. J Clin Microbiol 2012;50:2770-3. [PMID: 22593599 DOI: 10.1128/jcm.01155-12] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
18
Albuquerque P, Caridade CMR, Marcal ARS, Cruz J, Cruz L, Santos CL, Mendes MV, Tavares F. Identification of Xanthomonas fragariae, Xanthomonas axonopodis pv. phaseoli, and Xanthomonas fuscans subsp. fuscans with novel markers and using a dot blot platform coupled with automatic data analysis. Appl Environ Microbiol 2011;77:5619-28. [PMID: 21705524 PMCID: PMC3165254 DOI: 10.1128/aem.05189-11] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2011] [Accepted: 06/05/2011] [Indexed: 11/20/2022]  Open
19
Effects of substrate composition on the structure of microbial communities in wastewater using fluorescence in situ hybridisation. Syst Appl Microbiol 2011;34:337-43. [DOI: 10.1016/j.syapm.2010.10.006] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2010] [Revised: 10/10/2010] [Accepted: 10/13/2010] [Indexed: 11/18/2022]
20
Nagaoka T, Watanabe S. A GPU-based calculation using the three-dimensional FDTD method for electromagnetic field analysis. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2011;2010:327-30. [PMID: 21096967 DOI: 10.1109/iembs.2010.5627705] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
21
Caridade CR, Marcal AS, Mendonca T, Albuquerque P, Mendes MV, Tavares F. Automatic analysis of macroarrays images. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2011;2010:6122-5. [PMID: 21097139 DOI: 10.1109/iembs.2010.5627805] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
22
Aquilanti L, Carbini A, Strappati R, Santarelli S, Silvestri G, Garofalo C, Clementi F. Characterisation of Lactobacillus helveticus strains producing antihypertensive peptides by RAPD and inverse-PCR of IS elements. Benef Microbes 2010;1:229-42. [DOI: 10.3920/bm2010.0015] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
23
MILLS SUSAN, O’SULLIVAN ORLA, HILL COLIN, FITZGERALD GERALD, ROSS RPAUL. The changing face of dairy starter culture research: From genomics to economics. INT J DAIRY TECHNOL 2010. [DOI: 10.1111/j.1471-0307.2010.00563.x] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
24
Marcal AS, Caridade CR, Albuquerque P, Mendes MV, Tavares F. Automatic detection of molecular markers in digital images. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2010;2009:6710-3. [PMID: 19964445 DOI: 10.1109/iembs.2009.5333807] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
25
Horká M, Horký J, Kubesová A, Mazanec K, Matoušková H, Šlais K. Electromigration techniques – a fast and economical tool for differentiation of similar strains of microorganisms. Analyst 2010;135:1636-44. [DOI: 10.1039/c0an00083c] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
PrevPage 1 of 1 1Next
© 2004-2024 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA