Remote chlorophyll-a estimates for inland waters based on a cluster-based classification

Response of mineral particles in inland lakes to water optical properties and its influence on chlorophyll-a estimation

Many chlorophyll-a (Chl-a) remote sensing estimation algorithms have been developed for inland water, and they are proposed always based on some ideal assumptions, which are difficult to meet in complex inland waters. Based on MIE scattering theory, this study calculated the optical properties of mineral particles under different size distribution and refractive index conditions, and the Hydrolight software was employed to simulate remote sensing reflectance in the presence of different mineral particles. The findings indicated that the reflectance is significantly influenced by the slope (j) of particle size distribution function and the imaginary part (n') of the refractive index, with the real part (n) having a comparatively minor impact. Through both a simulated dataset containing 18,000 entries and an in situ measured dataset encompassing 2183 data from hundreds of lakes worldwide, the sensitivities of band ratio (BR), fluorescence baseline height (FLH), and three-band algorithms (TBA) to mineral particles were explored. It can be found that BR showed the best tolerance to mineral particles, followed by TBA. However, when the ISM concentration is less than 30 g m-3, the influence of CDOM cannot be ignored. Additionally, a dataset of over 400 entries is necessary for developing the BR algorithm to mitigate the incidental errors arising from differences in data magnitude. And if the amount of developing datasets is less than 400 but greater than 200, the TBA algorithm is more likely to obtain more stable accuracy.

Detection and mapping of water and chlorophyll-a spread using Sentinel-2 satellite imagery for water quality assessment of inland water bodies

Water quality monitoring of reservoirs is currently a significant challenge in the tropical regions of the world due to limited monitoring stations and hydrological data. Remote sensing techniques have proven to be a powerful tool for continuous real-time monitoring and assessment of tropical reservoirs water quality. Although many studies have detected chlorophyll-a (Chl-a) concentrations as a proxy to represent nutrient contamination, using Sentinel 2 for eutrophic or hypereutrophic inland water bodies, mainly reservoirs, minimal efforts have been made for oligotrophic and mesotrophic reservoirs. The present study aimed to develop a modeling framework to map and estimate spatio-temporal variability of Chl-a levels and associated water spread using the Modified Normalized Difference Water Index (MNDWI) and Maximum Chlorophyll Index (MCI). Moreover, the impact of land use/land cover type of the contributing watershed in the oligo-mesotrophic reservoir, Bhadra (tropical reservoir), for 2018 and 2019 using Sentinel 2 satellite data was analyzed. The results show that the water spread area was higher in the post-monsoon months and lower in the summer months. This was further validated by the correlation with reservoir storage, which showed a strong relationship (R2 = 0.97, 2018; R2 = 0.93, 2019). The estimated Chl-a spread was higher in the winter season, because the reservoir catchment was dominated by deciduous forest, producing a large amount of leaf litter in tropical regions, which leads to an increase in the level of Chl-a. It was found that Chl-a spread in the reservoir, specifically at the inlet sources and near agricultural land practices (western parts of the Bhadra reservoir). Based on the findings of this study, the MCI spectral index derived from Sentinel 2 data can be used to accurately map the spread of Chl-a in diverse water bodies, thereby offering a robust scientific basis for effective reservoir management.

Long-term remote observations of particulate organic phosphorus concentration in eutrophic Lake Taihu based on a novel algorithm

Monitoring the long-term spatiotemporal variations in particulate organic phosphorus concentration (C_POP) is imperative for clarifying the phosphorus cycle and its biogeochemical behavior in waters. However, little attention has been devoted to this owing to a lack of suitable bio-optical algorithms that allow the application of remote sensing data. In this study, based on Moderate Resolution Imaging Spectroradiometer (MODIS) data, a novel absorption-based algorithm of C_POP was developed for eutrophic Lake Taihu, China. The algorithm yielded a promising performance with a mean absolute percentage error of 27.75% and root mean square error of 21.09 μg/L. The long-term MODIS-derived C_POP demonstrated an overall increasing pattern over the past 19 years (2003-2021) and a significant temporal heterogeneity in Lake Taihu, with higher value in summer (82.06 ± 3.81 μg/L) and autumn (78.74 ± 3.8 μg/L), and lower C_POP in spring (79.52 ± 3.81 μg/L) and winter (81.97 ± 3.8 μg/L). Spatially, relatively higher C_POP was observed in the Zhushan Bay (85.87 ± 7.5 μg/L), whereas the lower value was observed in the Xukou Bay (78.95 ± 3.48 μg/L). In addition, significant correlations (r > 0.6, P < 0.05) were observed between C_POP and air temperature, chlorophyll-a concentration and cyanobacterial blooms areas, demonstrating that C_POP was greatly influenced by air temperature and algal metabolism. This study provides the first record of the spatial-temporal characteristics of C_POP in Lake Taihu over the past 19 years, and the C_POP results and regulatory factors analyses could provide valuable insights for aquatic ecosystem conservation.

Data reconstruction of daily MODIS chlorophyll-a concentration and spatio-temporal variations in the Northwestern Pacific

Sea surface chlorophyll-a concentration (Chl-a) is a key proxy for phytoplankton biomass. Spatio-temporal continuous Chl-a data are important to understand the mechanisms of chlorophyll occurrence and development and track phytoplankton changes. However, the greatest challenge in utilizing daily Chl-a data is massive missing pixels due to orbital position and cloud coverage. This study proposes the application of a spatial filling method using the machine learning-based Extreme Gradient Boosting (BST) to reconstruct missing pixels of daily MODIS Chl-a data from 2007 to 2018. The approach is applied to different trophic biogeographical subregions of the Northwestern Pacific where it has complex phytoplankton dynamics and frequent data missing. Various environmental variables are taken into consideration, including meteorological forcing, geographic and topographic features, and oceanic physical components. The BST-reconstructed Chl-a (BST Chl-a) is validated using in-situ Chl-a measurements, VIIRS and Himawari-8 Chl-a products. The results show that the BST model is highly adaptive in reconstructing Chl-a data, and it performs well in pelagic, offshore and coastal with the best performance in pelagic. BST Chl-a improves coverage without significant quality degradation compared to the original MODIS Chl-a. BST Chl-a agrees better with in-situ data than that of MODIS, with CC of 0.742, RMSE of 0.247, MAE of 0.202 and Bias of 0.089. Cross-satellite validation using VIIRS and Himawari-8 Chl-a also shows promising results with the CC of 0.861 and 0.765, respectively, suggesting the high accuracy of BST Chl-a. The inter-annual trend of BST Chl-a decreases in coastal and increases in offshore and pelagic. BST Chl-a images present similar spatial patterns to MODIS Chl-a under different missing rates, with gradual decreases from coastal to pelagic. It indicates that phytoplankton bloom patterns can be identified by daily BST Chl-a images.

Monitoring Optical Variability in Complex Inland Waters Using Satellite Remote Sensing Data

Optical classification for water bodies was carried out based on satellite remote sensing data, which avoided the limitation of having a limited amount of in situ measured spectral data. Unsupervised cluster analysis was performed on 53,815 reflectance spectra extracted at 500-m intervals based on the same season or quasi-same season Landsat 8 SR data using the algorithm of fuzzy c-means. Lakes and reservoirs in the study area were comprehensively identified as three optical types representing different limnological features. The shape and amplitude characteristics of the reflectance spectra for the three optical water types indicated that one corresponds to the clearest water, one corresponds to turbid water, and the other is moderate clear water. The novelty detection technique was further used to label the match-ups of the in situ data set collected during 2006 to 2019 in 12 field surveys based on mathematical rules of the three optical water types. The results confirmed that each optical water type was associated with different bio-optical properties, and the total suspended matter of the clearest, moderate clear and turbid water types were 14.99 mg/L, 41.06 mg/L and 83.81 mg/L, respectively. Overall, the clearest, moderate clear and turbid waters in the study area accounted for 49.3%, 36.7% and 14.0%, respectively. The spatial distribution of optical water types in the study area was seamlessly mapped. Results showed that the bio-optical conditions of the water distributed across the southeast region were roughly homogeneous, but in most of other regions and within some water bodies, they showed a patchy distribution and heterogeneity. This study is useful for monitoring water quality and provides a useful foundation to develop or tuning algorithms to retrieve water quality parameters.

Sensitivity Analysis and Optimization of a Radiative Transfer Numerical Model for Turbid Lake Water

Remote sensing can detect and map algal blooms. The HydroLight (Sequoia Scientific Inc., Bellevue, Washington, DC, USA) model generates the reflectance profiles of various water bodies. However, the influence of model parameters has rarely been investigated for inland water. Moreover, the simulation time of the HydroLight model increases as the amount of input data increases, which limits the practicality of the HydroLight model. This study developed a graphical user interface (GUI) software for the sensitivity analysis of the HydroLight model through multiple executions. The GUI software stably performed parameter sensitivity analysis and substantially reduced the simulation time by up to 92%. The GUI software results for lake water show that the backscattering ratio was the most important parameter for estimating vertical reflectance profiles. Based on the sensitivity analysis results, parameter calibration of the HydroLight model was performed. The reflectance profiles obtained using the optimized parameters agreed with observed profiles, with R2 values of over 0.98. Thus, a strong relationship between the backscattering coefficient and the observed cyanobacteria genera cells was identified.

Hybrid Chlorophyll-a Algorithm for Assessing Trophic States of a Tropical Brazilian Reservoir Based on MSI/Sentinel-2 Data

Using remote sensing for monitoring trophic states of inland waters relies on the calibration of chlorophyll-a (chl-a) bio-optical algorithms. One of the main limiting factors of calibrating those algorithms is that they cannot accurately cope with the wide chl-a concentration ranges in optically complex waters subject to different trophic states. Thus, this study proposes an optical hybrid chl-a algorithm (OHA), which is a combined framework of algorithms for specific chl-a concentration ranges. The study area is Ibitinga Reservoir characterized by high spatiotemporal variability of chl-a concentrations (3–1000 mg/m3). We took the following steps to address this issue: (1) we defined optical classes of specific chl-a concentration ranges using Spectral Angle Mapper (SAM); (2) we calibrated/validated chl-a bio-optical algorithms for each trophic class using simulated Sentinel-2 MSI (Multispectral Instrument) bands; (3) and we applied a decision tree classifier in MSI/Sentinel-2 image to detect the optical classes and to switch to the suitable algorithm for the given class. The results showed that three optical classes represent different ranges of chl-a concentration: class 1 varies 2.89–22.83 mg/m3, class 2 varies 19.51–87.63 mg/m3, and class 3 varies 75.89–938.97 mg/m3. The best algorithms for trophic classes 1, 2, and 3 are the 3-band (R2 = 0.78; MAPE - Mean Absolute Percentage Error = 34.36%), slope (R2 = 0.93; MAPE = 23.35%), and 2-band (R2 = 0.98; MAPE = 20.12%), respectively. The decision tree classifier showed an accuracy of 95% for detecting SAM’s optical trophic classes. The overall performance of OHA was satisfactory (R2 = 0.98; MAPE = 26.33%) using in situ data but reduced in the Sentinel-2 image (R2 = 0.42; MAPE = 28.32%) due to the temporal gap between matchups and the variability in reservoir hydrodynamics. In summary, OHA proved to be a viable method for estimating chl-a concentration in Ibitinga Reservoir and the extension of this framework allowed a more precise chl-a estimate in eutrophic inland waters.

Remote sensing of cyanobacterial blooms in inland waters: present knowledge and future challenges

Timely monitoring, detection and quantification of cyanobacterial blooms are especially important for controlling public health risks and understanding aquatic ecosystem dynamics. Due to the advantages of simultaneous data acquisition over large geographical areas and high temporal coverage, remote sensing strongly facilitates cyanobacterial bloom monitoring in inland waters. We provide a comprehensive review regarding cyanobacterial bloom remote sensing in inland waters including cyanobacterial optical characteristics, operational remote sensing algorithms of chlorophyll, phycocyanin and cyanobacterial bloom areas, and satellite imaging applications. We conclude that there have many significant progresses in the remote sensing algorithm of cyanobacterial pigments over the past 30 years. The band ratio algorithms in the red and near-infrared (NIR) spectral regions have great potential for the remote estimation of chlorophyll a in eutrophic and hypereutrophic inland waters, and the floating algae index (FAI) is the most widely used spectral index for detecting dense cyanobacterial blooms. Landsat, MODIS (Moderate Resolution Imaging Spectroradiometer) and MERIS (MEdium Resolution Imaging Spectrometer) are the most widely used products for monitoring the spatial and temporal dynamics of cyanobacteria in inland waters due to the appropriate temporal, spatial and spectral resolutions. Future work should primarily focus on the development of universal algorithms, remote retrievals of cyanobacterial blooms in oligotrophic waters, and the algorithm applicability to mapping phycocyanin at a large spatial-temporal scale. The applications of satellite images will greatly improve our understanding of the driving mechanism of cyanobacterial blooms by combining numerical and ecosystem dynamics models.

Using Optical Water Types to Monitor Changes in Optically Complex Inland and Coastal Waters

The European Space Agency’s Copernicus satellites Sentinel-2 and Sentinel-3 provide observations with high spectral, spatial, and temporal resolution which can be used to monitor inland and coastal waters. Such waters are optically complex, and the water color may vary from completely clear to dark brown. The main factors influencing water color are colored dissolved organic matter, phytoplankton, and suspended sediments. Recently, there has been a growing interest in the use of the optical water type (OWT) classification in the remote sensing of ocean color. Such classification helps to clarify relationships between different properties inside a certain class and quantify variation between classes. In this study, we present a new OWT classification based on the in situ measurements of reflectance spectra for boreal region lakes and coastal areas without extreme optical conditions. This classification divides waters into five OWT (Clear, Moderate, Turbid, Very Turbid, and Brown) and shows that different OWTs have different remote sensing reflectance spectra and that each OWT is associated with a specific bio-optical condition. Developed OWTs are distinguishable by both the MultiSpectral Instrument (MSI) and the Ocean and Land Color Instrument (OLCI) sensors, and the accuracy of the OWT assignment was 95% for both the MSI and OLCI bands. To determine OWT from MSI images, we tested different atmospheric correction (AC) processors, namely ACOLITE, C2RCC, POLYMER, and Sen2Cor and for OLCI images, we tested AC processors ALTNNA, C2RCC, and L2. The C2RCC AC processor was the most accurate and reliable for use with MSI and OLCI images to estimate OWTs.

Distinguishing two phenotypes of blooms using the normalised difference peak-valley index (NDPI) and Cyano-Chlorophyta index (CCI)

Harmful algal blooms are now widely recognised as a severe threat to freshwater ecosystems, particularly in semi-fluvial environments created by river damming. Given the high spatial and temporal variability of cyanobacterial blooms, remote sensing is more suitable than conventional field surveys in monitoring blooms. However, the majority of existing algorithms cannot distinguish cyanobacterial blooms from eukaryotic algal blooms by extracting spectral features in the remote-sensing reflectance (R_rs). In this study, in situ R_rs spectra of cyanobacterial and green algal blooms in Lakes Gaoyang, Hanfeng and Changshou of the Three Gorges Reservoir (TGR) in China were recorded. Characteristic spectral indices, namely, the normalised difference peak-valley index and Cyano-Chlorophyta index, were used to develop an algorithm that can effectively distinguish cyanobacterial and green algal blooms. The proposed algorithm was also used to investigate the spatio-temporal dynamics of the two phenotypes of blooms derived from Huan Jing 1 charge-coupled device images. The resulting accuracy of 93.5% demonstrated that remote sensing technology, in conjunction with field observation, could efficiently differentiate bloom-forming species and assess the water quality in the TGR.

Remote estimation of cyanobacterial blooms using the risky grade index (RGI) and coverage area index (CAI): a case study in the Three Gorges Reservoir, China

Harmful cyanobacterial blooms are exemplified as a major environmental concern due to producing toxin, and have generated a serious threat to public health. Knowledge on the spatial-temporal distribution of cyanobacterial blooms is therefore crucial for public health organizations and environmental agencies. In this study, field data and charge coupled device (CCD) image were collected in Lakes Gaoyang and Hanfeng of the Three Gorges Reservoir (TGR), China. We conducted the risky grade index (RGI) and coverage area index to develop a feasible estimation framework of cyanobacterial blooms. First, the close relationships between CCD reflectance spectral indices and water quality parameters were constructed based on water optical classification. Then, a regional algorithm for the RGI classification was established by density peaks. Finally, our proposed algorithm was applied to investigate dynamics of cyanobacterial blooms in the two lakes from 6-year series of CCD images. Encouraging results demonstrated that satellite remote sensing in conjunction with field observation can aid in the estimation of cyanobacterial blooms in the TGR.

Evaluation of chlorophyll-a retrieval algorithms based on MERIS bands for optically varying eutrophic inland lakes

Fourteen field campaigns were conducted in five inland lakes during different seasons between 2006 and 2013, and a total of 398 water samples with varying optical characteristics were collected. The characteristics were analyzed based on remote sensing reflectance, and an automatic cluster two-step method was applied for water classification. The inland waters could be clustered into three types, which we labeled water types I, II and III. From water types I to III, the effect of the phytoplankton on the optical characteristics gradually decreased. Four chlorophyll-a retrieval algorithms for Case II water, a two-band, three-band, four-band and SCI (Synthetic Chlorophyll Index) algorithm were evaluated for three water types based on the MERIS bands. Different MERIS bands were used for the three water types in each of the four algorithms. The four algorithms had different levels of retrieval accuracy for each water type, and no single algorithm could be successfully applied to all water types. For water types I and III, the three-band algorithm performed the best, while the four-band algorithm had the highest retrieval accuracy for water type II. However, the three-band algorithm is preferable to the two-band algorithm for turbid eutrophic inland waters. The SCI algorithm is recommended for highly turbid water with a higher concentration of total suspended solids. Our research indicates that the chlorophyll-a concentration retrieval by remote sensing for optically contrasted inland water requires a specific algorithm that is based on the optical characteristics of inland water bodies to obtain higher estimation accuracy.

Remote estimation of cyanobacteria-dominance in inland waters

Remote sensing of the concentration ratio of phycocyanin (PC) to chlorophyll a (Chl-a) is important for water management, as it provides critical knowledge regarding the phytoplankton community. Using the observed in situ datasets, a simple empirical model was developed to estimate PC:Chl-a based on the band ratio index of R(rs)(550R(rs(620) (R(rs-): remote sensing reflectance) (R(2) = 0.84; RMSE = 1.01). This simple model exhibited relatively high validation accuracy using the independent validation dataset. In addition, the model can be successfully applied to AISA (Airborne Imaging Spectrometer for Application) image data, indicating the practicality of the developed model for determining the dominance of cyanobacteria among the total phytoplankton from airborne image data in inland waters. However, the present model cannot be used directly to estimate PC:Chl-a in extremely turbid waters with total suspended matter (TSM) concentrations higher than 25 mg/l. For these waters, the model parameters may require local optimization according to the conditions of the water under analysis. The findings of this study indicate that our proposed model is able to detect the dominance of cyanobacteria among the phytoplankton in inland waters, where the turbidity is not too much high. This study improves our understanding of the species composition of phytoplankton biomass in optically complex inland bodies of water.