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Al-Obaidi JR, Jamaludin AA, Rahman NA, Ahmad-Kamil EI. How plants respond to heavy metal contamination: a narrative review of proteomic studies and phytoremediation applications. PLANTA 2024; 259:103. [PMID: 38551683 DOI: 10.1007/s00425-024-04378-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2023] [Accepted: 03/07/2024] [Indexed: 04/02/2024]
Abstract
MAIN CONCLUSION Heavy metal pollution caused by human activities is a serious threat to the environment and human health. Plants have evolved sophisticated defence systems to deal with heavy metal stress, with proteins and enzymes serving as critical intercepting agents for heavy metal toxicity reduction. Proteomics continues to be effective in identifying markers associated with stress response and metabolic processes. This review explores the complex interactions between heavy metal pollution and plant physiology, with an emphasis on proteomic and biotechnological perspectives. Over the last century, accelerated industrialization, agriculture activities, energy production, and urbanization have established a constant need for natural resources, resulting in environmental degradation. The widespread buildup of heavy metals in ecosystems as a result of human activity is especially concerning. Although some heavy metals are required by organisms in trace amounts, high concentrations pose serious risks to the ecosystem and human health. As immobile organisms, plants are directly exposed to heavy metal contamination, prompting the development of robust defence mechanisms. Proteomics has been used to understand how plants react to heavy metal stress. The development of proteomic techniques offers promising opportunities to improve plant tolerance to toxicity from heavy metals. Additionally, there is substantial scope for phytoremediation, a sustainable method that uses plants to extract, sequester, or eliminate contaminants in the context of changes in protein expression and total protein behaviour. Changes in proteins and enzymatic activities have been highlighted to illuminate the complex effects of heavy metal pollution on plant metabolism, and how proteomic research has revealed the plant's ability to mitigate heavy metal toxicity by intercepting vital nutrients, organic substances, and/or microorganisms.
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Affiliation(s)
- Jameel R Al-Obaidi
- Department of Biology, Faculty of Science and Mathematics, Universiti Pendidikan Sultan Idris, 35900, Tanjong Malim, Perak, Malaysia.
- Applied Science Research Center, Applied Science Private University, Amman, Jordan.
| | - Azi Azeyanty Jamaludin
- Department of Biology, Faculty of Science and Mathematics, Universiti Pendidikan Sultan Idris, 35900, Tanjong Malim, Perak, Malaysia
- Center of Biodiversity and Conservation, Faculty of Science and Mathematics, Universiti Pendidikan Sultan Idris, 35900, Tanjong Malim, Perak, Malaysia
| | - Norafizah Abdul Rahman
- Gene Marker Laboratory, Faculty of Agriculture and Life Sciences (AGLS), Science South Building, Lincoln University, Lincoln, 7608, Canterbury, New Zealand
| | - E I Ahmad-Kamil
- Malaysian Nature Society (MNS), JKR 641, Jalan Kelantan, Bukit Persekutuan, 50480, Kuala Lumpur, Malaysia.
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2
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Chen D, Wang Y, Li N, Huang Y, Mao Y, Liu X, Du Y, Sun K. Transcriptomic and physiological analyses of Trichoderma citrinoviride HT-1 assisted phytoremediation of Cd contaminated water by Phragmites australis. BMC Microbiol 2024; 24:93. [PMID: 38515035 PMCID: PMC10956257 DOI: 10.1186/s12866-024-03252-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2024] [Accepted: 03/07/2024] [Indexed: 03/23/2024] Open
Abstract
Plant growth promoting microbe assisted phytoremediation is considered a more effective approach to rehabilitation than the single use of plants, but underlying mechanism is still unclear. In this study, we combined transcriptomic and physiological methods to explore the mechanism of plant growth promoting microbe Trichoderma citrinoviride HT-1 assisted phytoremediation of Cd contaminated water by Phragmites australis. The results show that the strain HT-1 significantly promoted P. australis growth, increased the photosynthetic rate, enhanced antioxidant enzyme activities. The chlorophyll content and the activity of superoxide dismutase (SOD), peroxidase (POD), catalase (CAT) and ascorbate peroxidase (APX) were increased by 83.78%, 23.17%, 47.60%, 97.14% and 12.23% on average, and decreased the content of malondialdehyde (MDA) by 31.10%. At the same time, strain HT-1 improved the absorption and transport of Cd in P. australis, and the removal rate of Cd was increased by 7.56% on average. Transcriptome analysis showed that strain HT-1 induced significant up-regulated the expression of genes related to oxidative phosphorylation and ribosome pathways, and these upregulated genes promoted P. australis remediation efficiency and resistance to Cd stress. Our results provide a mechanistic understanding of plant growth promoting microbe assisted phytoremediation under Cd stress.
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Affiliation(s)
- DaWei Chen
- College of Life Sciences, Northwest Normal University, Lanzhou, 730070, Gansu, China
| | - YiHan Wang
- College of Life Sciences, Northwest Normal University, Lanzhou, 730070, Gansu, China
| | - Ni Li
- College of Life Sciences, Northwest Normal University, Lanzhou, 730070, Gansu, China
| | - YaLi Huang
- College of Life Sciences, Northwest Normal University, Lanzhou, 730070, Gansu, China
| | - YiFan Mao
- College of Life Sciences, Northwest Normal University, Lanzhou, 730070, Gansu, China
| | - XiaoJun Liu
- College of Life Sciences, Northwest Normal University, Lanzhou, 730070, Gansu, China
| | - YaRong Du
- Key Laboratory of Strategic Mineral Resources of the Upper Yellow River, Ministry of Natural Resources, Lanzhou, 730046, China
| | - Kun Sun
- College of Life Sciences, Northwest Normal University, Lanzhou, 730070, Gansu, China.
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3
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Wang Y, Li P, Tian Y, Xiong Z, Zheng Z, Yi Z, Ao H, Wang Q, Li J. Bacterial seed endophyte and abiotic factors influence cadmium accumulation in rice (Oryza sativa) along the Yangtze River area. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2023; 263:115352. [PMID: 37579590 DOI: 10.1016/j.ecoenv.2023.115352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2023] [Revised: 08/03/2023] [Accepted: 08/08/2023] [Indexed: 08/16/2023]
Abstract
Cadmium (Cd) contamination in rice (Oryza sativa) is particularly problematic due to its high risk to human health. Investigating the hidden roles of seed endophytes of rice in influencing Cd accumulation is essential to comprehensively understand the effects of biotic and abiotic factors to food security. Here, the content of Cd in soils and rice (Huanghuazhan) seeds from 19 sites along the Yangtze River exhibited considerable differences. From a biotic perspective, we observed the dominant endophytic bacteria, Stenotrophomonas (7.25 %), contribute to Cd control of rice (below 0.2 mg kg-1). Partial Least Squares (PLS) analysis further suggested that Enterobacteriaceae (15.48 %), altitude and pH were found to be the strong variables that might reduce the Cd uptake of rice. In contrast, Cytophagaceae (0.58 %), latitude and mean annual air pressure had the opposite effect. In pot experiments, after respectively inoculating the isolated endophytic bacteria Stenotrophomonas T4 and Enterobacter R1, N1 (f_Enterobacteriaceae), the Cd contents in shoot decreased by 47.6 %, 21.9 % and 33.0 % compared to controls. The distribution of Cd resistant genes (e.g., czcABC, nccAB, cznA) of Stenotrophomonas, Enterobacteriaceaea and Cytophagaceae further suggested their distinct manners in influencing the Cd uptake of rice. Overall, this study provides new insights into the food security threatened by globally widespread Cd pollution.
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Affiliation(s)
- Yujie Wang
- College of Agronomy, Hunan Agricultural University, Changsha 410128, China
| | - Peng Li
- College of Agronomy, Hunan Agricultural University, Changsha 410128, China
| | - Yunhe Tian
- College of Agronomy, Hunan Agricultural University, Changsha 410128, China
| | - Ziqin Xiong
- College of Agronomy, Hunan Agricultural University, Changsha 410128, China
| | - Zhongyi Zheng
- College of Agronomy, Hunan Agricultural University, Changsha 410128, China
| | - Zhenxie Yi
- College of Agronomy, Hunan Agricultural University, Changsha 410128, China
| | - Hejun Ao
- College of Agronomy, Hunan Agricultural University, Changsha 410128, China
| | - Qiming Wang
- College of Agronomy, Hunan Agricultural University, Changsha 410128, China
| | - Juan Li
- College of Agronomy, Hunan Agricultural University, Changsha 410128, China.
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Bhardwaj A. Understanding the diversified microbial operon framework coupled to arsenic transformation and expulsion. Biologia (Bratisl) 2022. [DOI: 10.1007/s11756-022-01198-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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5
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Zhao L, Zhu Y, Wang M, Han Y, Xu J, Feng W, Zheng X. Enolase, a cadmium resistance related protein from hyperaccumulator plant Phytolacca americana, increase the tolerance of Escherichia coli to cadmium stress. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2022; 25:562-571. [PMID: 35802034 DOI: 10.1080/15226514.2022.2092064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Phytolacca americana is a Cd hyperaccumulator plant that accumulates significant amounts of Cd in leaves, making it a valuable phytoremediation plant species. Our previous research found enolase (ENO) may play an important part in P. americana to cope with Cd stress. As a multifunctional enzyme, ENO was involved not only in glycolysis but also in the response of plants to various environmental stresses. However, there are few studies on the function of PaENO (P. americana enolase) in coping with Cd stress. In this study, the PaENO gene was isolated from P. americana, and the expression level of PaENO gene significantly increased after Cd treatment. The enzymatic activity analysis showed PaENO had typical ENO activity, and the 42-position serine was essential to the enzymatic activity of PaENO. The Cd resistance assay indicated the expression of PaENO remarkably enhanced the resistance of E. coli to Cd, which was achieved by reducing the Cd content in E. coli. Moreover, both the expression of inactive PaENO and PaMBP-1 (alternative translation product of PaENO) can improve the tolerance of E. coli to Cd. The results indicated PaENO may be alternatively translated into the transcription factor PaMBP-1 to participate in the response of P. americana to Cd stress.
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Affiliation(s)
- Le Zhao
- School of Pharmacy, Henan University of Chinese Medicine, Zhengzhou, China
- Co-construction Collaborative Innovation Center for Chinese Medicine and Respiratory Diseases by Henan and Education Ministry of P.R. China, Zhengzhou, China
| | - Yunhao Zhu
- School of Pharmacy, Henan University of Chinese Medicine, Zhengzhou, China
- Co-construction Collaborative Innovation Center for Chinese Medicine and Respiratory Diseases by Henan and Education Ministry of P.R. China, Zhengzhou, China
| | - Min Wang
- Beijing Key Laboratory of Plant Research and Development, College of Chemistry and Materials Engineering, Beijing Technology and Business University, Beijing, China
| | - Yongguang Han
- School of Pharmacy, Henan University of Chinese Medicine, Zhengzhou, China
| | - Jiao Xu
- School of Pharmacy, Henan University of Chinese Medicine, Zhengzhou, China
| | - Weisheng Feng
- School of Pharmacy, Henan University of Chinese Medicine, Zhengzhou, China
- Co-construction Collaborative Innovation Center for Chinese Medicine and Respiratory Diseases by Henan and Education Ministry of P.R. China, Zhengzhou, China
| | - Xiaoke Zheng
- School of Pharmacy, Henan University of Chinese Medicine, Zhengzhou, China
- Co-construction Collaborative Innovation Center for Chinese Medicine and Respiratory Diseases by Henan and Education Ministry of P.R. China, Zhengzhou, China
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6
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Ali S, Tyagi A, Mushtaq M, Al-Mahmoudi H, Bae H. Harnessing plant microbiome for mitigating arsenic toxicity in sustainable agriculture. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 300:118940. [PMID: 35122918 DOI: 10.1016/j.envpol.2022.118940] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2021] [Revised: 01/08/2022] [Accepted: 01/30/2022] [Indexed: 06/14/2023]
Abstract
Heavy metal toxicity has become an impediment to agricultural productivity, which presents major human health concerns in terms of food safety. Among them, arsenic (As) a non-essential heavy metal has gained worldwide attention because of its noxious effects on agriculture and public health. The increasing rate of global warming and anthropogenic activities have promptly exacerbated As levels in the agricultural soil, thereby causing adverse effects to crop genetic and phenotypic traits and rendering them vulnerable to other stresses. Conventional breeding and transgenic approaches have been widely adapted for producing heavy metal resilient crops; however, they are time-consuming and labor-intensive. Hence, finding new mitigation strategies for As toxicity would be a game-changer for sustainable agriculture. One such promising approach is harnessing plant microbiome in the era of 'omics' which is gaining prominence in recent years. The use of plant microbiome and their cocktails to combat As metal toxicity has gained widespread attention, because of their ability to metabolize toxic elements and offer an array of perquisites to host plants such as increased nutrient availability, stress resilience, soil fertility, and yield. A comprehensive understanding of below-ground plant-microbiome interactions and their underlying molecular mechanisms in exhibiting resilience towards As toxicity will help in identifying elite microbial communities for As mitigation. In this review, we have discussed the effect of As, their accumulation, transportation, signaling, and detoxification in plants. We have also discussed the role of the plant microbiome in mitigating As toxicity which has become an intriguing research frontier in phytoremediation. This review also provides insights on the advancements in constructing the beneficial synthetic microbial communities (SynComs) using microbiome engineering that will facilitate the development of the most advanced As remedial tool kit in sustainable agriculture.
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Affiliation(s)
- Sajad Ali
- Department of Biotechnology, Yeungnam University, Gyeongsan, Gyeongbuk, 38541, Republic of Korea
| | - Anshika Tyagi
- Department of Biotechnology, Yeungnam University, Gyeongsan, Gyeongbuk, 38541, Republic of Korea
| | | | - Henda Al-Mahmoudi
- Directorate of Programs, International Center for Biosaline Agriculture, Dubai, United Arab Emirates
| | - Hanhong Bae
- Department of Biotechnology, Yeungnam University, Gyeongsan, Gyeongbuk, 38541, Republic of Korea.
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Alcántara-Martínez N, Figueroa-Martínez F, Rivera-Cabrera F, Volke-Sepúlveda T. An unexpected guest: a green microalga associated with the arsenic-tolerant shrub Acacia farnesiana. FEMS Microbiol Ecol 2022; 98:6565283. [PMID: 35394028 DOI: 10.1093/femsec/fiac041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2021] [Revised: 03/30/2022] [Accepted: 04/06/2022] [Indexed: 11/13/2022] Open
Abstract
The best-known plant endophytes include mainly fungi and bacteria, but there are also a few records of microalgae growing endophytically in vascular land plants, some of which belong to the genus Coccomyxa. In this study, we isolated a single-celled photosynthetic microorganism from the arsenic-tolerant shrub Acacia farnesiana, thus we hypothesized that it is an endophytic arsenic-tolerant microalga. The microorganism was identified as belonging to the genus Coccomyxa, and the observation of algal cells within the root tissues strongly suggests its endophytic nature. The alga's tolerance to arsenate (AsV) and its influence on the fitness of A. farnesiana in the presence of AsV were evaluated. Coccomyxa sp. can tolerate up to 2000 µM of AsV for periods shorter than 10 days, however, AsV-tolerance decreased significantly in longer exposure periods. The association with the microalga increased the pigment content in aboveground tissues of A. farnesiana seedlings exposed to AsV for 50 days, without changes in plant growth or arsenic accumulation. This work describes the association, probably endophytic, between an angiosperm and a microalga, confirming the ability of the genus Coccomyxa to form associations with land plants and broadening the known variety of plant endophytes.
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Affiliation(s)
- Nemi Alcántara-Martínez
- Department of Compared Biology, Universidad Nacional Autónoma de México, Av. Universidad 3000, Ciudad Universitaria, Coyoacán 04510, Mexico City, MEXICO
| | - Francisco Figueroa-Martínez
- CONACyT Research Fellow, Department of Biotechnology, Universidad Autónoma Metropolitana-Iztapalapa. San Rafael Atlixco 186, Col. Vicentina, Iztapalapa 09340, Mexico City. MEXICO
| | - Fernando Rivera-Cabrera
- Department of Health Sciences, Universidad Autónoma Metropolitana-Iztapalapa. San Rafael Atlixco 186, Col. Vicentina, Iztapalapa 09340, Mexico City. MEXICO
| | - Tania Volke-Sepúlveda
- CONACyT Research Fellow, Department of Biotechnology, Universidad Autónoma Metropolitana-Iztapalapa. San Rafael Atlixco 186, Col. Vicentina, Iztapalapa 09340, Mexico City. MEXICO
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Phurailatpam L, Dalal VK, Singh N, Mishra S. Heavy Metal Stress Alleviation Through Omics Analysis of Soil and Plant Microbiome. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2022. [DOI: 10.3389/fsufs.2021.817932] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Abstract
Heavy metal (HM) contamination of soil and water resources is a global concern, which not only limits crop yield and quality, but also has serious environmental effects. Due to the non-biodegradable nature and toxicity, high concentration of HMs in food and environment is a serious threat to the entire ecosystem. Moreover, the target of supplying safe and quality food to the rising human population (expected to reach ~9–10 bn by the year 2050), necessitates effective treatment of the HM-contaminated soil. Various microbe-mediated bioremediation strategies such as biosorption, bioprecipiation, biostimulation, etc., have been found to be effective in uptake and conversion of HMs to less toxic forms. Further, in the past few years, the use of soil and plant-associated microbiome for HM stress alleviation is gaining attention among the scientific community. In general, microbes are spectacular in being dynamic and more responsive to environmental conditions in comparison to their host plants. Moreover, with the advancements in high throughput sequencing technologies, the focus is eventually shifting from just structural characterization to functional insights into the microbiome. The microbes inhabiting the HM-contaminated environments or associated with HM-tolerant plants are a source for exploring HM-tolerant microbial communities, which could be used for enhancing bioremediation efficiency and conferring HM tolerance in plants. This review discusses the application of omics techniques including metagenomics, metatranscriptomics, metaproteomics, and metabolomics, for rapid and robust identification of HM-tolerant microbial communities, mining novel HM resistance genes, and fabricating the HM resistome.
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Nabi A, Naeem M, Aftab T, Khan MMA, Ahmad P. A comprehensive review of adaptations in plants under arsenic toxicity: Physiological, metabolic and molecular interventions. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 290:118029. [PMID: 34474375 DOI: 10.1016/j.envpol.2021.118029] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2021] [Revised: 08/18/2021] [Accepted: 08/20/2021] [Indexed: 06/13/2023]
Abstract
Arsenic (As) is recognized as a toxic metalloid and a severe threat to biodiversity due to its contamination. Soil and groundwater contamination with this metalloid has become a major concern. Large fractions of cultivable lands are becoming infertile gradually due to the irrigation of As contaminated water released from various sources. The toxicity of As causes the generation of free radicals, which are harmful to cellular metabolism and functions of plants. It alters the growth, metabolic, physiological, and molecular functions of the plants due to oxidative burst. Plants employ different signaling mechanisms to face the As toxicity like phosphate cascade, MAPK (Mitogen-Activated Protein Kinase), Ca-calmodulin, hormones, and ROS-signaling. The toxicity of As may significantly be reduced through various remediation techniques. Among them, the microbial-assisted remediation technique is cost-effective and eco-friendly. It breaks down the metalloid into less harmful species through various processes viz. biovolatilization, biomethylation, and transformation. Moreover, the adaptation strategies towards As toxicity are vacuolar sequestration, involvement of plant defense mechanism, and restricting its uptake from plant roots to above-ground parts. The speciation, uptake, transport, metabolism, ion dynamics, signaling pathways, crosstalk with phytohormones and gaseous molecules, as well as harmful impacts of the As on physiological processes, overall development of plants and remediation techniques are summarized in this review.
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Affiliation(s)
- Aarifa Nabi
- Plant Physiology Section, Department of Botany, Aligarh Muslim University, Aligarh, 202002, India
| | - M Naeem
- Plant Physiology Section, Department of Botany, Aligarh Muslim University, Aligarh, 202002, India.
| | - Tariq Aftab
- Plant Physiology Section, Department of Botany, Aligarh Muslim University, Aligarh, 202002, India
| | - M Masroor A Khan
- Plant Physiology Section, Department of Botany, Aligarh Muslim University, Aligarh, 202002, India
| | - Parvaiz Ahmad
- Botany and Microbiology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
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Guo J, Chen Y, Lu P, Liu M, Sun P, Zhang Z. Roles of endophytic bacteria in Suaeda salsa grown in coastal wetlands: Plant growth characteristics and salt tolerance mechanisms. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 287:117641. [PMID: 34426384 DOI: 10.1016/j.envpol.2021.117641] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2020] [Revised: 05/24/2021] [Accepted: 06/20/2021] [Indexed: 05/11/2023]
Abstract
Salinity is a limiting factor in the growth of plants in coastal wetlands. The interaction of halophytes with salt-tolerant endophytes has been one of the major concerns in this area. However, the mechanism by which endophytes promote halophyte growth remains unclear. The growth and physiological responses of Suaeda salsa inoculated with endophytic bacteria (Sphingomonas prati and Sphingomonas zeicaulis) at 0 ‰ and 20 ‰ NaCl were studied. The results showed that Sphingomonas zeicaulis had stronger positive effects on the growth of Suaeda salsa under 0 ‰ NaCl, and Sphingomonas prati performed better under 20 ‰ NaCl. Sphingomonas prati inoculation increased the mean height, root length, fresh weight and dry weight by 45.43%, 9.91%, 82.00% and 102.25%, respectively, compared with the uninoculated treatment at 20 ‰ NaCl. Sphingomonas prati inoculation decreased MDA content by 23.78%, while the soluble sugar and soluble protein contents increased by 15.08% and 12.57%, respectively, compared to the control, at 20 ‰ NaCl. Increases in SOD and CAT in the Sphingomonas prati inoculation were 1.03 and 1.47-fold greater, respectively, than in the Sphingomonas zeicaulis inoculation, under 20 ‰ NaCl. Moreover, Sphingomonas prati and Sphingomonas zeicaulis had antagonistic interactions in Suaeda salsa according to the results of the "interaction equation" (most G values were negative). PCA, clustering analysis and the PLS model revealed two mechanisms for regulating plant salt tolerance by which Sphingomonas prati enhanced Suaeda salsa growth: (1) Sphingomonas prati improved intracellular osmotic metabolism and (2) Sphingomonas prati promoted the production of CAT in the antioxidant enzyme system and retained permeability. This study provides new insight into the comprehensive understanding and evaluation of endophytic bacteria as biological inoculants in plants under salt stress.
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Affiliation(s)
- Jiameng Guo
- College of Environmental Science and Engineering, Ocean University of China, Qingdao, China
| | - Youyuan Chen
- College of Environmental Science and Engineering, Ocean University of China, Qingdao, China; Key Laboratory of Marine Environment and Ecology, Ministry of Education of China, Ocean University of China, Qingdao, China; Shandong Provincial Key Laboratory of Marine Environment and Geological Engineering, Ocean University of China, Qingdao, China.
| | - Pengzhan Lu
- College of Environmental Science and Engineering, Ocean University of China, Qingdao, China
| | - Ming Liu
- College of Environmental Science and Engineering, Ocean University of China, Qingdao, China
| | - Ping Sun
- College of Environmental Science and Engineering, Ocean University of China, Qingdao, China
| | - Zhiming Zhang
- College of Environmental Science and Engineering, Ocean University of China, Qingdao, China; Key Laboratory of Marine Environment and Ecology, Ministry of Education of China, Ocean University of China, Qingdao, China; Shandong Provincial Key Laboratory of Marine Environment and Geological Engineering, Ocean University of China, Qingdao, China
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11
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Perez-Gelvez YNC, Camus AC, Bridger R, Wells L, Rhodes OE, Bergmann CW. Effects of chronic exposure to low levels of IR on Medaka ( Oryzias latipes): a proteomic and bioinformatic approach. Int J Radiat Biol 2021; 97:1485-1501. [PMID: 34355643 DOI: 10.1080/09553002.2021.1962570] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
PURPOSE Chronic exposure to ionizing radiation (IR) at low doses (<100 mGy) has been insufficiently studied to understand fully the risk to health. Relatively little knowledge exists regarding how species and healthy tissues respond at the protein level to chronic exposure to low doses of IR, and mass spectrometric-based profiling of protein expression is a powerful tool for studying changes in protein abundance. MATERIALS AND METHODS SDS gel electrophoresis, LC-MS/MS mass spectrometry-based approaches and bioinformatic data analytics were used to detect proteomic changes following chronic exposure to moderate/low doses of radiation in adults and normally developed Medaka fish (Oryzias latipes). RESULTS Significant variations in the abundance of proteins involved in thyroid hormone signaling and lipid metabolism were detected, which could be related to the gonadal regression phenotype observed after 21.04 mGy and 204.3 mGy/day exposure. The global proteomic change was towards overexpression of proteins in muscle and skin, while the opposite effect was observed in internal organs. CONCLUSION The present study provides information on the impacts of biologically relevant low doses of IR, which will be useful in future research for the identification of potential biomarkers of IR exposure and allow for a better assessment of radiation biosafety regulations.
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Affiliation(s)
- Yeni Natalia C Perez-Gelvez
- Carbohydrate Complex Research Center, Biochemistry and Molecular Biology, The University of Georgia, Athens, GA, USA
| | - Alvin C Camus
- College of Veterinary Medicine, Department of Pathology, The University of Georgia, Athens, GA, USA
| | - Robert Bridger
- Carbohydrate Complex Research Center, The University of Georgia, Athens, GA, USA
| | - Lance Wells
- Carbohydrate Complex Research Center, The University of Georgia, Athens, GA, USA
| | - Olin E Rhodes
- Savannah River Ecology Laboratory, Odum School of Ecology, The University of Georgia, Athens, GA, USA
| | - Carl W Bergmann
- Carbohydrate Complex Research Center, The University of Georgia, Athens, GA, USA
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12
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Alka S, Shahir S, Ibrahim N, Rahmad N, Haliba N, Abd Manan F. Histological and proteome analyses of Microbacterium foliorum-mediated decrease in arsenic toxicity in Melastoma malabathricum. 3 Biotech 2021; 11:336. [PMID: 34221807 PMCID: PMC8208456 DOI: 10.1007/s13205-021-02864-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2020] [Accepted: 05/31/2021] [Indexed: 01/03/2023] Open
Abstract
Arsenic (As) is an increasing threat across the globe, widely known as a non-threshold carcinogen, and it is reaching harmful values in several areas of the world. In this study, the effect of plant growth promoting bacteria (Microbacterium foliorum) on inorganic arsenic (Arsenate) phytoremediation by Melastoma malabathricum plants was investigated through histological analysis and proteome profiling of the M. malabathricum plants. Two-dimensional gel electrophoresis and transmission electron microscopy were used to conduct the proteome and histological analysis. When arsenic-treated cells were compared to untreated cells, substantial changes were found (1) severely altered the morphology of the cells, intensely disturbed; (2) the cell wall was thicker; (3) drastically changed the cytoplasm, the cells were polygonal in shape, different in size (scattered), and relatively dense. Compared to the control group, the ultra-structure of the root cells of the control group revealed intact cytoplasm, vacuole, and cell wall under exposure to As + bacteria that had a minor effect on the cell form. To further understand As + bacteria interaction, proteome profiling of the root cell was analyzed. The As-induced oxidative stress enrichment was confirmed by the up-regulation of tubulin, nucleoside diphosphate kinase, and major allergen during As + bacteria exposure It was observed that the profusion of proteins involved in defence, protein biogenesis, signaling, photosynthesis, nucleoside and energy metabolism was greater in As + bacteria as compared to the rooting out of As only. Overall, it can be obviously seen that the current study demonstrates the effectiveness of phytoremediation by M. foliorum on proteins involved and responsive pathways in dealing with As toxicity in M. malabathricum plant.
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Affiliation(s)
- Sadiya Alka
- Department of Biosciences, Faculty of Science, Universiti Teknologi Malaysia, 81310 Skudai, Johor Malaysia
| | - Shafinaz Shahir
- Department of Biosciences, Faculty of Science, Universiti Teknologi Malaysia, 81310 Skudai, Johor Malaysia
| | - Norahim Ibrahim
- Department of Biosciences, Faculty of Science, Universiti Teknologi Malaysia, 81310 Skudai, Johor Malaysia
| | - Norasfaliza Rahmad
- Agro-Biotechnology Institute, National Institutes of Biotechnology Malaysia (NIBM), c/o MARDI Headquater, 43400 Serdang, Selangor Malaysia
| | - Norhazalina Haliba
- University Industry Research Laboratory, Universiti Teknologi Malaysia, 81310 Skudai, Johor Malaysia
| | - Fazilah Abd Manan
- Department of Biosciences, Faculty of Science, Universiti Teknologi Malaysia, 81310 Skudai, Johor Malaysia
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Zheng X, Li W, Gao Y. Knockdown of α-enolase (Eno1) genes by RNAi does not increase the sensitivity of Propsilocerus akamusi to cadmium stress. Int J Biol Macromol 2020; 164:3388-3393. [PMID: 32841668 DOI: 10.1016/j.ijbiomac.2020.08.164] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2020] [Accepted: 08/20/2020] [Indexed: 11/28/2022]
Abstract
α-enolase (Eno1) is a multifunctional enzyme which can as a stress protein under various environmental stresses. Recent researches also reported that Eno1 appears to have Cd2+ stress-related functions in cadmium tolerant plants. Our previous study inferred that the Eno1 gene might play an important role in the response of Propsilocerus akamusi to exogenous Cd2+. However, reports on the role of the Eno1 gene in coping with cadmium stress are still limited. In this study, we evaluated the roles of PaEno1 in the tolerance of P. akamusi to Cd2+ using RNAi technology and the response of recombinant proteins of PaEno1 in an E. coli expression system under Cd2+ stress. Our results showed that knockdown of PaEno1 did not increase but reduce the sensitivity of P. akamusi larvae to Cd2+ stress. However, bioassays showed the expression of recombinant PaEno1 protein in Rosetta cells enhanced the growth ability of E. coli under Cd2+ stress. These results suggested that overexpression of PaEno1 can significantly enhance the tolerance to heavy metal cadmium stresses in E. coli cells. However, knockdown of PaEno1 genes by RNAi does not increase the sensitivity of P. akamusi to cadmium stress.
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Affiliation(s)
- Xianyun Zheng
- Institute of Environmental Science, Shanxi University, Taiyuan 030006, PR China.
| | - Wanghong Li
- School of Physical Exercise and Education, Shanxi University, Taiyuan 030006, PR China
| | - Ye Gao
- School of Physical Exercise and Education, Shanxi University, Taiyuan 030006, PR China
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Wu Y, Ma L, Liu Q, Vestergård M, Topalovic O, Wang Q, Zhou Q, Huang L, Yang X, Feng Y. The plant-growth promoting bacteria promote cadmium uptake by inducing a hormonal crosstalk and lateral root formation in a hyperaccumulator plant Sedum alfredii. JOURNAL OF HAZARDOUS MATERIALS 2020; 395:122661. [PMID: 32305720 DOI: 10.1016/j.jhazmat.2020.122661] [Citation(s) in RCA: 54] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2020] [Revised: 03/17/2020] [Accepted: 04/04/2020] [Indexed: 05/27/2023]
Abstract
Plant growth-promoting bacteria (PGPB) that inhabit hyperaccumulating plants assist cadmium (Cd) absorption, but the underlying mechanism has not been comprehensively studied. For this reason, we combined the fluorescence imaging, and transcriptomic and metabolomic methods in a Cd hyperaccumulator, Sedum alfredii, inoculated or not with PGPB Pseudomonas fluorescens. The results showed that the newly emerged lateral roots, that were heavily colonized by P. fluorescens, are the main entry for Cd influx in S. alfredii. Inoculation with P. fluorescens promoted a lateral root formation of its host plant, leading to a higher Cd phytoremediation efficiency. Furthermore, the plant transcriptome revealed that 146 plant hormone related genes were significantly up-regulated by the bacterial inoculation, with 119 of them showing a complex interaction, which suggests that a hormonal crosstalk participated root development. The targeted metabolomics analysis showed that P. fluorescens inoculation significantly increased indole acetic acid concentration and significantly decreased concentrations of abscisic acid, brassinolide, trans-zeatin, ethylene and jasmonic acid in S. alfredii roots, thereby inducing lateral root emergence. Altogether, our results highlight the importance of PGPB-induced lateral root formation for the increased Cd uptake in a hyperaccumulating plant.
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Affiliation(s)
- Yingjie Wu
- Key Laboratory of Environment Remediation and Ecological Health of Ministry of Education, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; Department of Agroecology, Faculty of Technical Sciences, Aarhus University, Forsøgsvej 1, 4200, Slagelse, Denmark
| | - Luyao Ma
- Key Laboratory of Environment Remediation and Ecological Health of Ministry of Education, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Qizhen Liu
- Key Laboratory of Environment Remediation and Ecological Health of Ministry of Education, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Mette Vestergård
- Department of Agroecology, Faculty of Technical Sciences, Aarhus University, Forsøgsvej 1, 4200, Slagelse, Denmark
| | - Olivera Topalovic
- Department of Agroecology, Faculty of Technical Sciences, Aarhus University, Forsøgsvej 1, 4200, Slagelse, Denmark
| | - Qiong Wang
- Key Laboratory of Environment Remediation and Ecological Health of Ministry of Education, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Qiyao Zhou
- Key Laboratory of Environment Remediation and Ecological Health of Ministry of Education, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Lukuan Huang
- Key Laboratory of Environment Remediation and Ecological Health of Ministry of Education, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Xiaoe Yang
- Key Laboratory of Environment Remediation and Ecological Health of Ministry of Education, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Ying Feng
- Key Laboratory of Environment Remediation and Ecological Health of Ministry of Education, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China.
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Hayat K, Menhas S, Bundschuh J, Zhou P, Niazi NK, Hussain A, Hayat S, Ali H, Wang J, Khan AA, Ali A, Munis FH, Chaudhary HJ. Plant growth promotion and enhanced uptake of Cd by combinatorial application of Bacillus pumilus and EDTA on Zea mays L. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2020; 22:1372-1384. [PMID: 32579378 DOI: 10.1080/15226514.2020.1780410] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
In developing countries, Cd contamination is ubiquitous which limits agriculture productivity. The current study was designed to investigate the efficacy of plant-Bacillus pumilus-ethylene diamine tetraacetic acid (EDTA) and plant-microbe-chelator (PMC) synergy for enhanced plant growth and Cd-uptake potential of Zea mays in industrially contaminated and cadmium (Cd) spiked soil. A pot experiment was conducted by growing Z. mays seedlings either inoculated with B. pumilus or un-inoculated along with the application of 5 mM EDTA. Plants were exposed to two levels of Cd contamination for 45 days. An increase in Cd uptake was observed in Z. mays inoculated with B. pumilus followed by EDTA treatment as compared to non-inoculated and un-treated ones. Zea mays showed improved values with PMC approach for different growth parameters including root length (41%), shoot length (40%), fresh weight (59%), dry weight (49%), chlorophyll contents (49%), and relative water contents (30%). Higher tolerance index (117%) was observed for plants grown in soil spiked with 300 mg kg-1 Cd (S2). PMC application markedly enhanced Cd uptake potential of Z. mays up to 12% and 68.8%, respectively, in S1 and S2 soil. While the PMC application increased Cd accumulation capacity of Z. mays by 71.2% and 52.5% in S1 and S2 soil. The calculated bioaccumulation and translocation factor revealed that Z. mays possess Cd uptake potential, and this ability can be significantly enhanced with PMC application.
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Affiliation(s)
- Kashif Hayat
- Key Laboratory of Urban Agriculture, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China
- Faculty of Biological Sciences, Department of Plant Sciences, Quaid-i-Azam University, Islamabad, Pakistan
| | - Saiqa Menhas
- Key Laboratory of Urban Agriculture, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China
- Faculty of Biological Sciences, Department of Plant Sciences, Quaid-i-Azam University, Islamabad, Pakistan
| | - Jochen Bundschuh
- Faculty of Health, Engineering and Sciences, University of Southern Queensland, Toowoomba, Australia
- School of Civil Engineering and Surveying, University of Southern Queensland, Toowoomba, Australia
| | - Pei Zhou
- Key Laboratory of Urban Agriculture, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China
| | - Nabeel Khan Niazi
- School of Civil Engineering and Surveying, University of Southern Queensland, Toowoomba, Australia
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad, Pakistan
| | - Amjad Hussain
- Faculty of Biological Sciences, Department of Plant Sciences, Quaid-i-Azam University, Islamabad, Pakistan
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
| | - Sikandar Hayat
- College of Natural Resources and Environment, Northwest A&F University, Yangling, China
| | - Hazrat Ali
- Green & Environmental Chemistry, Ecotoxicology and Ecology Laboratory, Department of Zoology, University of Malakand, Khyber Pakhtunkhwa, Pakistan
| | - Juncai Wang
- Key Laboratory of Urban Agriculture, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China
| | - Amir Abdullah Khan
- Faculty of Biological Sciences, Department of Plant Sciences, Quaid-i-Azam University, Islamabad, Pakistan
- Department of Plant Biology and Ecology, Nankai University, Tianjin, China
| | - Amjad Ali
- College of Natural Resources and Environment, Northwest A&F University, Yangling, China
| | - Farooq Hussain Munis
- Faculty of Biological Sciences, Department of Plant Sciences, Quaid-i-Azam University, Islamabad, Pakistan
| | - Hassan Javed Chaudhary
- Faculty of Biological Sciences, Department of Plant Sciences, Quaid-i-Azam University, Islamabad, Pakistan
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16
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Hyperaccumulation of arsenic by Pteris vittata, a potential strategy for phytoremediation of arsenic-contaminated soil. ACTA ACUST UNITED AC 2020. [DOI: 10.1007/s42398-020-00106-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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17
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Liu Y, Li Y, Xia Y, Liu K, Ren L, Ji Y. The Dysbiosis of Gut Microbiota Caused by Low-Dose Cadmium Aggravate the Injury of Mice Liver through Increasing Intestinal Permeability. Microorganisms 2020; 8:microorganisms8020211. [PMID: 32033263 PMCID: PMC7074735 DOI: 10.3390/microorganisms8020211] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Revised: 01/29/2020] [Accepted: 01/31/2020] [Indexed: 12/31/2022] Open
Abstract
Cadmium (Cd), widely present in food and drinking water at low doses, can cause health risks. However, the mechanistic effects of long-term Cd exposure at low dose through dietary intake is poorly studied. The aim of this study is to elucidate whether the dysbiosis of gut microbiota caused by Cd at an environmental low dose can aggravate the injury of mice liver, and the possible mechanism is investigated. In order to explore the potential underlying mechanism, the analyses of the variation of gut microbiota composition, intestinal permeability, and hepatic transcriptome were conducted. Our results showed that gut microbiota was disturbed. The rise of intestinal permeability induced by the dysbiosis of gut microbiota resulted in more Cd ions accumulating in mice liver, but it could be restored partly through depleting gut microbiota by antibiotics cocktail. Transcriptomic analyses indicated that 162 genes were significantly differentially expressed including 59 up-regulated and 103 down-regulated in Cd treatment. These genes were involved in several important pathways. Our findings provide a better understanding about the health risks of cadmium in the environment.
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Affiliation(s)
- Yehao Liu
- School of Public Health, Anhui Medical University, Hefei 230032, Anhui, China; (Y.L.); (K.L.); (L.R.)
| | - Yuhui Li
- Department of Biological and Environmental Engineering, Hefei University, Hefei 230032, Anhui, China;
| | - Yuhong Xia
- School of Public Health, Anhui Medical University, Hefei 230032, Anhui, China; (Y.L.); (K.L.); (L.R.)
| | - Kaiyong Liu
- School of Public Health, Anhui Medical University, Hefei 230032, Anhui, China; (Y.L.); (K.L.); (L.R.)
| | - Lingling Ren
- School of Public Health, Anhui Medical University, Hefei 230032, Anhui, China; (Y.L.); (K.L.); (L.R.)
| | - Yanli Ji
- School of Public Health, Anhui Medical University, Hefei 230032, Anhui, China; (Y.L.); (K.L.); (L.R.)
- Correspondence:
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Arsenic accumulation by a rhizosphere bacterial strain Ochrobactrum tritici reduces rice plant arsenic levels. World J Microbiol Biotechnol 2020; 36:23. [DOI: 10.1007/s11274-020-2800-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Accepted: 01/08/2020] [Indexed: 01/26/2023]
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19
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An Effective Protocol for Proteome Analysis of Medaka ( Oryzias latipes) after Acute Exposure to Ionizing Radiation. Methods Protoc 2019; 2:mps2030066. [PMID: 31366181 PMCID: PMC6789492 DOI: 10.3390/mps2030066] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2019] [Revised: 07/16/2019] [Accepted: 07/26/2019] [Indexed: 12/17/2022] Open
Abstract
All terrestrial organisms are subject to evolutionary pressures associated with natural sources of ionizing radiation (IR). The legacy of human-induced IR associated with energy, weapons production, medicine, and research has changed the distribution and magnitude of these evolutionary pressures. To date, no study has systematically examined the effects of environmentally relevant doses of radiation exposure across an organismal proteome. This void in knowledge has been due, in part, to technological deficiencies that have hampered quantifiable environmentally relevant IR doses and sensitive detection of proteomic responses. Here, we describe a protocol that addresses both needs, combining quantifiable IR delivery with a reliable method to yield proteomic comparisons of control and irradiated Medaka fish. Exposures were conducted at the Savannah River Ecology Laboratory (SREL, in Aiken, SC), where fish were subsequently dissected into three tissue sets (carcasses, organs and intestines) and frozen until analysis. Tissue proteins were extracted, resolved by Sodium Dodecyl Sulfate-Polyacrylamide Gel Electrophoresis (SDS-PAGE), and each sample lane was divided into ten equal portions. Following in-gel tryptic digestion, peptides released from each gel portion were identified and quantified by Liquid Chromatography-Mass Spectrometry (LC-MS/MS) to obtain the most complete, comparative study to date of proteomic responses to environmentally relevant doses of IR. This method provides a simple approach for use in ongoing epidemiologic studies of chronic exposure to environmentally relevant levels of IR and should also serve well in physiological, developmental, and toxicological studies.
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