Current and future effects of global change on a hotspot's freshwater diversity

Characterizing the Gut Microbial Communities of Native and Invasive Freshwater Bivalves after Long-Term Sample Preservation

Freshwater mussels are important indicators of the overall health of their environment but have suffered declines that have been attributed to factors such as habitat degradation, a loss of fish hosts, climate change, and excessive nutrient inputs. The loss of mussel biodiversity can negatively impact freshwater ecosystems such that understanding the mussel's gut microbiome has been identified as a priority topic for developing conservation strategies. In this study, we determine whether ethanol-stored specimens of freshwater mussels can yield representative information about their gut microbiomes such that changes in the microbiome through time could potentially be determined from museum mussel collections. A short-term preservation experiment using the invasive clam Corbicula fluminea was used to validate the use of ethanol as a method for storing the bivalve microbiome, and the gut microbiomes of nine native mussel species that had been preserved in ethanol for between 2 and 9 years were assessed. We show that ethanol preservation is a valid storage method for bivalve specimens in terms of maintaining an effective sequencing depth and the richness of their gut bacterial assemblages and provide further insight into the gut microbiomes of the invasive clam C. fluminea and nine species of native mussels. From this, we identify a "core" genus of bacteria (Romboutsia) that is potentially common to all freshwater bivalve species studied. These findings support the potential use of ethanol-preserved museum specimens to examine patterns in the gut microbiomes of freshwater mussels over long periods.

Global change and plant-ecosystem functioning in freshwaters

Freshwater ecosystems are of worldwide importance for maintaining biodiversity and sustaining the provision of a myriad of ecosystem services to modern societies. Plants, one of the most important components of these ecosystems, are key to water nutrient removal, carbon storage, and food provision. Understanding how the functional connection between freshwater plants and ecosystems is affected by global change will be key to our ability to predict future changes in freshwater systems. Here, we synthesize global plant responses, adaptations, and feedbacks to present-day and future freshwater environments through trait-based approaches, from single individuals to entire communities. We outline the transdisciplinary knowledge benchmarks needed to further understand freshwater plant biodiversity and the fundamental services they provide.

A horizon scan exercise for aquatic invasive alien species in Iberian inland waters

As the number of introduced species keeps increasing unabatedly, identifying and prioritising current and potential Invasive Alien Species (IAS) has become essential to manage them. Horizon Scanning (HS), defined as an exploration of potential threats, is considered a fundamental component of IAS management. By combining scientific knowledge on taxa with expert opinion, we identified the most relevant aquatic IAS in the Iberian Peninsula, i.e., those with the greatest geographic extent (or probability of introduction), severe ecological, economic and human health impacts, greatest difficulty and acceptability of management. We highlighted the 126 most relevant IAS already present in Iberian inland waters (i.e., Concern list) and 89 with a high probability of being introduced in the near future (i.e., Alert list), of which 24 and 10 IAS, respectively, were considered as a management priority after receiving the highest scores in the expert assessment (i.e., top-ranked IAS). In both lists, aquatic IAS belonging to the four thematic groups (plants, freshwater invertebrates, estuarine invertebrates, and vertebrates) were identified as having been introduced through various pathways from different regions of the world and classified according to their main functional feeding groups. Also, the latest update of the list of IAS of Union concern pursuant to Regulation (EU) No 1143/2014 includes only 12 top-ranked IAS identified for the Iberian Peninsula, while the national lists incorporate the vast majority of them. This fact underlines the great importance of taxa prioritisation exercises at biogeographical scales as a step prior to risk analyses and their inclusion in national lists. This HS provides a robust assessment and a cost-effective strategy for decision-makers and stakeholders to prioritise the use of limited resources for IAS prevention and management. Although applied at a transnational level in a European biodiversity hotspot, this approach is designed for potential application at any geographical or administrative scale, including the continental one.

Freshwater mussel conservation: A global horizon scan of emerging threats and opportunities

We identified 14 emerging and poorly understood threats and opportunities for addressing the global conservation of freshwater mussels over the next decade. A panel of 17 researchers and stakeholders from six continents submitted a total of 56 topics that were ranked and prioritized using a consensus-building Delphi technique. Our 14 priority topics fell into five broad themes (autecology, population dynamics, global stressors, global diversity, and ecosystem services) and included understanding diets throughout mussel life history; identifying the drivers of population declines; defining metrics for quantifying mussel health; assessing the role of predators, parasites, and disease; informed guidance on the risks and opportunities for captive breeding and translocations; the loss of mussel-fish co-evolutionary relationships; assessing the effects of increasing surface water changes; understanding the effects of sand and aggregate mining; understanding the effects of drug pollution and other emerging contaminants such as nanomaterials; appreciating the threats and opportunities arising from river restoration; conserving understudied hotspots by building local capacity through the principles of decolonization; identifying appropriate taxonomic units for conservation; improved quantification of the ecosystem services provided by mussels; and understanding how many mussels are enough to provide these services. Solutions for addressing the topics ranged from ecological studies to technological advances and socio-political engagement. Prioritization of our topics can help to drive a proactive approach to the conservation of this declining group which provides a multitude of important ecosystem services.

Fish and macroinvertebrate assemblages reveal extensive degradation of the world's rivers

Rivers suffer from multiple stressors acting simultaneously on their biota, but the consequences are poorly quantified at the global scale. We evaluated the biological condition of rivers globally, including the largest proportion of countries from the Global South published to date. We gathered macroinvertebrate- and fish-based assessments from 72,275 and 37,676 sites, respectively, from 64 study regions across six continents and 45 nations. Because assessments were based on differing methods, different systems were consolidated into a 3-class system: Good, Impaired, or Severely Impaired, following common guidelines. The proportion of sites in each class by study area was calculated and each region was assigned a Köppen-Geiger climate type, Human Footprint score (addressing landscape alterations), Human Development Index (HDI) score (addressing social welfare), % rivers with good ambient water quality, % protected freshwater key biodiversity areas; and % of forest area net change rate. We found that 50% of macroinvertebrate sites and 42% of fish sites were in Good condition, whereas 21% and 29% were Severely Impaired, respectively. The poorest biological conditions occurred in Arid and Equatorial climates and the best conditions occurred in Snow climates. Severely Impaired conditions were associated (Pearson correlation coefficient) with higher HDI scores, poorer physico-chemical water quality, and lower proportions of protected freshwater areas. Good biological conditions were associated with good water quality and increased forested areas. It is essential to implement statutory bioassessment programs in Asian, African, and South American countries, and continue them in Oceania, Europe, and North America. There is a need to invest in assessments based on fish, as there is less information globally and fish were strong indicators of degradation. Our study highlights a need to increase the extent and number of protected river catchments, preserve and restore natural forested areas in the catchments, treat wastewater discharges, and improve river connectivity.

A global synthesis of ecosystem services provided and disrupted by freshwater bivalve molluscs

Identification of ecosystem services, i.e. the contributions that ecosystems make to human well-being, has proven instrumental in galvanising public and political support for safeguarding biodiversity and its benefits to people. Here we synthesise the global evidence on ecosystem services provided and disrupted by freshwater bivalves, a heterogenous group of >1200 species, including some of the most threatened (in Unionida) and invasive (e.g. Dreissena polymorpha) taxa globally. Our systematic literature review resulted in a data set of 904 records from 69 countries relating to 24 classes of provisioning (N = 189), cultural (N = 491) and regulating (N = 224) services following the Common International Classification of Ecosystem Services (CICES). Prominent ecosystem services included (i) the provisioning of food, materials and medicinal products, (ii) knowledge acquisition (e.g. on water quality, past environments and historical societies), ornamental and other cultural contributions, and (iii) the filtration, sequestration, storage and/or transformation of biological and physico-chemical water properties. About 9% of records provided evidence for the disruption rather than provision of ecosystem services. Synergies and trade-offs of ecosystem services were observed. For instance, water filtration by freshwater bivalves can be beneficial for the cultural service 'biomonitoring', while negatively or positively affecting food consumption or human recreation. Our evidence base spanned a total of 91 genera and 191 species, dominated by Unionida (55% of records, 76% of species), Veneroida (21 and 9%, respectively; mainly Corbicula spp.) and Myoida (20 and 4%, respectively; mainly Dreissena spp.). About one third of records, predominantly from Europe and the Americas, related to species that were non-native to the country of study. The majority of records originated from Asia (35%), with available evidence for 23 CICES classes, as well as Europe (29%) and North America (23%), where research was largely focused on 'biomonitoring'. Whilst the earliest record (from 1949) originated from North America, since 2000, annual output of records has increased rapidly in Asia and Europe. Future research should focus on filling gaps in knowledge in lesser-studied regions, including Africa and South America, and should look to provide a quantitative valuation of the socio-economic costs and benefits of ecosystem services shaped by freshwater bivalves.

Historical connectivity and environmental filtering jointly determine the freshwater fish assemblages on Taiwan and Hainan Islands of China

The biotas of Taiwan and Hainan Islands are of continental origin, but the manner with which historical and ecological factors shaped these insular species is still unclear. Here, we used freshwater fish as a model to fill this gap by quantifying the phylogenetic structure of the insular faunas and disentangling the relative contribution of potential drivers. Firstly, we used clustering and ordination analyses to identify regional species pools. To test whether the insular freshwater fish faunas were phylogenetically clustered or overdispersed, we calculated the net relatedness index (NRI) and the nearest taxon index (NTI). Finally, we implemented logistic regressions to disentangle the relative importance of species attributes (i.e. maximum body length, climatic niche dissimilarity, and diversification) and historical connectivity in explaining the insular faunas. Our results showed that the most possible species pools of Taiwan are Zhejiang and Fujian provinces, and those of Hainan are Guangdong and Guangxi provinces. These insular faunas showed random phylogenetic structures in terms of NRI values. According to the NTI values, however, the Taiwanese fauna displayed more phylogenetic clustering, while the Hainanese one was more overdispersed. Both the standard and phylogenetic logistic regressions identified historical connectivity and climatic niche dissimilarity as the two top explanatory variables for species assemblages on these islands. Our reconstruction of the paleo-connected drainage basins provides insight into how historical processes and ecological factors interact to shape the freshwater fish fauna of the East Asian islands.

Laboratory-Based Comparison for the Effects of Environmental Stressors Supports Field Evidence for the Relative Importance of Pollution on Life History and Behavior of the Pond Snail, Lymnaea stagnalis

Biodiversity is declining at an alarming rate globally, with freshwater ecosystems particularly threatened. Field-based correlational studies have "ranked" stressors according to their relative effects on freshwater biota, however, supporting cause-effect data from laboratory exposures are lacking. Here, we designed exposures to elicit chronic effects over equivalent exposure ranges for three ubiquitous stressors (temperature: 22-28 °C; pollution [14 component mixture]: 0.05-50 μg/L; invasive predator cue [signal crayfish, Pacifasticus leniusculus]: 25-100% cue) and investigated effects on physiological end points in the pond snail (Lymnaeastagnalis). All stressors reduced posthatch survival at their highest exposure levels, however, highly divergent effects were observed at lower test levels. Temperature stimulated hatching, growth, and reproduction, whereas pollution delayed hatching, decreased growth, reduced egg number/embryo viability, and induced avoidance behavior. The invasive predator cue stimulated growth and reduced embryo viability. In agreement with field-based ranking of stressors, pollution was identified as having the most severe effects in our test system. We demonstrate here the utility of laboratory studies to effectively determine hierarchy of stressors according to their likelihood of causing harm in the field, which has importance for conservation. Finally, we report negative impacts on life-history traits central to population stability (survival/reproduction) at the lowest pollution level tested (0.05 μg/L).

Mitogenomic phylogeny and fossil-calibrated mutation rates for all F- and M-type mtDNA genes of the largest freshwater mussel family, the Unionidae (Bivalvia)

The Unionidae represent an excellent model taxon for unravelling the drivers of freshwater diversity, but, phylogeographic studies on Southeast Asian taxa are hampered by lack of a comprehensive phylogeny and mutation rates for this fauna. We present complete female- (F) and male-type (M) mitogenomes of four genera of the Southeast Asian clade Contradentini+Rectidentini. We calculate substitution rates for the mitogenome, the 13 protein-coding genes, the two ribosomal units and three commonly used fragments (co1, nd1 and 16S) of both F- and M-mtDNA, based on a fossil-calibrated, mitogenomic phylogeny of the Unionidae. Phylogenetic analyses, including an M+F concatenated dataset, consistently recovers a monophyletic Gonideinae. Subfamily-level topology is congruent with that of a previous nuclear genomic study and with patterns in mitochondrial gene order, suggesting Unionidae F-type 2 as a synapomorphy of the Gonideinae. Our phylogeny indicates that the clades Contradentini+Rectidentini and Lamprotulini+Pseudodontini+Gonideini split in the early Cretaceous (~125 Mya), and that the crown group of Contradentini+Rectidentini originated in the late Cretaceous (~79 Mya). Most gonideine tribes originated during the early Palaeogene. Substitution rates were comparable to those previously published for F-type co1 and 16S for certain Unionidae and Margaritiferidae species (pairs).

On the RIP: using Relative Impact Potential to assess the ecological impacts of invasive alien species

Invasive alien species continue to arrive in new locations with no abatement in rate, and thus greater predictive powers surrounding their ecological impacts are required. In particular, we need improved means of quantifying the ecological impacts of new invasive species under different contexts. Here, we develop a suite of metrics based upon the novel Relative Impact Potential (RIP) metric, combining the functional response (consumer per capita effect), with proxies for the numerical response (consumer population response), providing quantification of invasive species ecological impact. These metrics are comparative in relation to the eco-evolutionary baseline of trophically analogous natives, as well as other invasive species and across multiple populations. Crucially, the metrics also reveal how impacts of invasive species change under abiotic and biotic contexts. While studies focused solely on functional responses have been successful in predictive invasion ecology, RIP retains these advantages while adding vital other predictive elements, principally consumer abundance. RIP can also be combined with propagule pressure to quantify overall invasion risk. By highlighting functional response and numerical response proxies, we outline a user-friendly method for assessing the impacts of invaders of all trophic levels and taxonomic groups. We apply the metric to impact assessment in the face of climate change by taking account of both changing predator consumption rates and prey reproduction rates. We proceed to outline the application of RIP to assess biotic resistance against incoming invasive species, the effect of evolution on invasive species impacts, application to interspecific competition, changing spatio-temporal patterns of invasion, and how RIP can inform biological control. We propose that RIP provides scientists and practitioners with a user-friendly, customisable and, crucially, powerful technique to inform invasive species policy and management.

The palm oil industry and noncommunicable diseases

Large-scale industries do not operate in isolation, but have tangible impacts on human and planetary health. An often overlooked actor in the fight against noncommunicable diseases is the palm oil industry. The dominance of palm oil in the food processing industry makes it the world's most widely produced vegetable oil. We applied the commercial determinants of health framework to analyse the palm oil industry. We highlight the industry's mutually profitable relationship with the processed food industry and its impact on human and planetary health, including detrimental cultivation practices that are linked to respiratory illnesses, deforestation, loss of biodiversity and pollution. This analysis illustrates many parallels to the contested nature of practices adopted by the alcohol and tobacco industries. The article concludes with suggested actions for researchers, policy-makers and the global health community to address and mitigate the negative impacts of the palm oil industry on human and planetary health.

Biological monitoring in southern Africa: A review of the current status, challenges and future prospects

Biological monitoring programmes have gained popularity around the world particularly in southern Africa as they are fast, integrative and cost-effective approaches for assessing the effects of environmental stressors on aquatic ecosystems. This article reviews current efforts that have been made to use bioindicators (i.e. macroinvertebrates, diatoms and fish) in monitoring water resources and to summarise the challenges in employing these biological monitoring tools in southern Africa. In South Africa, macroinvertebrate (South African Scoring System (SASS)) and diatom based indices (e.g. South African diatom index (SADI)) have demonstrated their utility in identifying sources of impairment and determining the extent of impacts thus giving natural resource managers a scientifically defensible rationale for developing guidelines for conservation and management. Despite this advancement in South Africa, however, developing regionally appropriate quantitative tools for diagnosing ecosystem health is a pressing need for several other southern African countries. Together with sound scientific research, it is imperative for southern African countries to develop specific legislation and have mandated agencies, with proper training and funding to implement biomonitoring and bioassessments. We recommend for the advancement and adoption of biological criteria as an integrated approach to assessing the impact of human activities in riverine ecosystems of the southern African region.

Evaluation of the relationship between soil erosion and landscape metrics across Gorgan Watershed in northern Iran

Soil erosion is one of the most serious environmental threats strongly influenced by the spatial pattern of land uses. This study was designed to evaluate the relevance of land use pattern and soil erosion using landscape metrics across Gorgan Watershed in northern Iran. Therefore, the revised universal soil loss equation was applied to evaluate and model soil loss and sedimentation in the region. Then, soil erosion relationship to land use pattern was analyzed using a variety of metrics including percentage of landscape, number of patches, largest patch index, and landscape shape index. The results revealed that potential of soil loss, sediment retention, and sediment yield for the whole watershed were 6.6, 2.4, and 1.5 t ha^-1 year^-1, respectively. The quantity of sediment retention was estimated at 4.3, 3.2, 1.0, and 1.2 t ha^-1 year^-1 in forest, rangelands, agriculture, and built-up areas, respectively. Similarly, sediment yield was 0.6, 1.6, 1.5, and 2.1 t ha^-1 year^-1, respectively. The results revealed that the soil loss increased with decreasing metrics of forest and rangelands while increasing metrics of built-up regions and agricultural lands accelerated the process. Moreover, we showed that land use type of patches was an important factor on soil erosion, and soil loss was also affected by area, number, shape, and density of landscape patches. Result of this study can facilitate monitoring of erosion-sensitive areas in the watershed which can help managers and decision makers to design more suitable measures for soil conservation.