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Aakash A, Kulsoom R, Khan S, Siddiqui MS, Nabi D. Novel Models for Accurate Estimation of Air-Blood Partitioning: Applications to Individual Compounds and Complex Mixtures of Neutral Organic Compounds. J Chem Inf Model 2023; 63:7056-7066. [PMID: 37956246 PMCID: PMC10685450 DOI: 10.1021/acs.jcim.3c01288] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Revised: 10/23/2023] [Accepted: 10/25/2023] [Indexed: 11/15/2023]
Abstract
The air-blood partition coefficient (Kab) is extensively employed in human health risk assessment for chemical exposure. However, current Kab estimation approaches either require an extensive number of parameters or lack precision. In this study, we present two novel and parsimonious models to accurately estimate Kab values for individual neutral organic compounds, as well as their complex mixtures. The first model, termed the GC×GC model, was developed based on the retention times of nonpolar chemical analytes on comprehensive two-dimensional gas chromatography (GC×GC). This model is unique in its ability to estimate the Kab values for complex mixtures of nonpolar organic chemicals. The GC×GC model successfully accounted for the Kab variance (R2 = 0.97) and demonstrated strong prediction power (RMSE = 0.31 log unit) for an independent set of nonpolar chemical analytes. Overall, the GC×GC model can be used to estimate Kab values for complex mixtures of neutral organic compounds. The second model, termed the partition model (PM), is based on two types of partition coefficients: octanol to water (Kow) and air to water (Kaw). The PM was able to effectively account for the variability in Kab data (n = 344), yielding an R2 value of 0.93 and root-mean-square error (RMSE) of 0.34 log unit. The predictive power and explanatory performance of the PM were found to be comparable to those of the parameter-intensive Abraham solvation models (ASMs). Additionally, the PM can be integrated into the software EPI Suite, which is widely used in chemical risk assessment for initial screening. The PM provides quick and reliable estimation of Kab compared to ASMs, while the GC×GC model is uniquely suited for estimating Kab values for complex mixtures of neutral organic compounds. In summary, our study introduces two novel and parsimonious models for the accurate estimation of Kab values for both individual compounds and complex mixtures.
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Affiliation(s)
- Ahmad Aakash
- Institute
of Environmental Science and Engineering (IESE), School of Civil and
Environmental Engineering (SCEE), National
University of Sciences and Technology (NUST), H-12, 48000 Islamabad, Pakistan
| | - Ramsha Kulsoom
- Institute
of Environmental Science and Engineering (IESE), School of Civil and
Environmental Engineering (SCEE), National
University of Sciences and Technology (NUST), H-12, 48000 Islamabad, Pakistan
| | - Saba Khan
- Institute
of Environmental Science and Engineering (IESE), School of Civil and
Environmental Engineering (SCEE), National
University of Sciences and Technology (NUST), H-12, 48000 Islamabad, Pakistan
| | - Musab Saeed Siddiqui
- Institute
of Environmental Science and Engineering (IESE), School of Civil and
Environmental Engineering (SCEE), National
University of Sciences and Technology (NUST), H-12, 48000 Islamabad, Pakistan
| | - Deedar Nabi
- Institute
of Environmental Science and Engineering (IESE), School of Civil and
Environmental Engineering (SCEE), National
University of Sciences and Technology (NUST), H-12, 48000 Islamabad, Pakistan
- GEOMAR
Helmholtz Center for Ocean Research, Wischhofstrasse 1-3, 24148 Kiel, Germany
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Song K, Yang X, Wang Y, Wan Z, Wang J, Wen Y, Jiang H, Li A, Zhang J, Lu S, Fan B, Guo S, Ding Y. Addressing new chemicals of emerging concern (CECs) in an indoor office. ENVIRONMENT INTERNATIONAL 2023; 181:108259. [PMID: 37839268 DOI: 10.1016/j.envint.2023.108259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Revised: 09/27/2023] [Accepted: 10/09/2023] [Indexed: 10/17/2023]
Abstract
Indoor pollutants change over time and place. Exposure to hazardous organics is associated with adverse health effects. This work sampled gaseous organics by Tenax TA tubes in two indoor rooms, i.e., an office set as samples, and the room of chassis dynamometer (RCD) set as backgrounds. Compounds are analyzed by a thermal desorption comprehensive two-dimensional gas chromatography-quadrupole mass spectrometer (TD-GC × GC-qMS). Four new chemicals of emerging concern (CECs) are screened in 469 organics quantified. We proposed a three-step pipeline for CECs screening utilizing GC × GC including 1) non-target scanning of organics with convincing molecular structures and quantification results, 2) statistical analysis between samples and backgrounds to extract useful information, and 3) pixel-based property estimation to evaluate the contamination potential of addressed chemicals. New CECs spotted in this work are all intermediate volatility organic compounds (IVOCs), containing mintketone, isolongifolene, β-funebrene, and (5α)-androstane. Mintketone and sesquiterpenes may be derived from the use of volatile chemical products (VCPs), while (5α)-androstane is probably human-emitted. The occurrence and contamination potential of the addressed new CECs are reported for the first time. Non-target scanning and the measurement of IVOCs are of vital importance to get a full glimpse of indoor organics.
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Affiliation(s)
- Kai Song
- State Environmental Protection Key Laboratory of Vehicle Emission Control and Simulation, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; Vehicle Emission Control Center, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; State Key Joint Laboratory of Environmental Simulation and Pollution Control, International Joint Laboratory for Regional Pollution Control, Ministry of Education (IJRC), College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China; Collaborative Innovation Center of Atmospheric Environment and Equipment Technology, Nanjing University of Information Science & Technology, Nanjing 210044, China
| | - Xinping Yang
- State Environmental Protection Key Laboratory of Vehicle Emission Control and Simulation, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; Vehicle Emission Control Center, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Yunjing Wang
- State Environmental Protection Key Laboratory of Vehicle Emission Control and Simulation, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; Vehicle Emission Control Center, Chinese Research Academy of Environmental Sciences, Beijing 100012, China.
| | - Zichao Wan
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, International Joint Laboratory for Regional Pollution Control, Ministry of Education (IJRC), College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China
| | - Junfang Wang
- State Environmental Protection Key Laboratory of Vehicle Emission Control and Simulation, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; Vehicle Emission Control Center, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Yi Wen
- China Automotive Technology and Research Center (CATARC), Beijing 100176, China
| | - Han Jiang
- State Environmental Protection Key Laboratory of Vehicle Emission Control and Simulation, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; Vehicle Emission Control Center, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Ang Li
- China Automotive Technology and Research Center (CATARC), Beijing 100176, China
| | | | - Sihua Lu
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, International Joint Laboratory for Regional Pollution Control, Ministry of Education (IJRC), College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China
| | - Baoming Fan
- TECHSHIP (Beijing) Technology Co., LTD, Beijing 100039, China
| | - Song Guo
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, International Joint Laboratory for Regional Pollution Control, Ministry of Education (IJRC), College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China; Collaborative Innovation Center of Atmospheric Environment and Equipment Technology, Nanjing University of Information Science & Technology, Nanjing 210044, China.
| | - Yan Ding
- State Environmental Protection Key Laboratory of Vehicle Emission Control and Simulation, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; Vehicle Emission Control Center, Chinese Research Academy of Environmental Sciences, Beijing 100012, China.
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Aakash A, Nabi D. Reliable prediction of sensory irritation threshold values of organic compounds using new models based on linear free energy relationships and GC×GC retention parameters. CHEMOSPHERE 2023; 313:137339. [PMID: 36423720 DOI: 10.1016/j.chemosphere.2022.137339] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2022] [Revised: 11/18/2022] [Accepted: 11/19/2022] [Indexed: 06/16/2023]
Abstract
The human sensory irritation threshold (SIT) is an important biochemical parameter for the exposure assessment of organic air pollutants. First, we recalibrated the Abraham solvation models (ASMs) for 9 SIT endpoints by curating 720 individual experimental SIT values to find an accurate and parsimonious ASM variant, which exhibited root mean square error (RMSE) = 0.174-0.473 log unit. Second, we report linear free energy relationships - henceforth called partition models (PMs) - which exploit the correlations of 9 SIT endpoints with the linear combinations of partition coefficients for octanol-water and air-water systems showing RMSE = 0.221-0.591 log unit. These PMs can easily be integrated into widely used EPI-Suite™ screening tool. The explanatory and predictive performance of PMs were like parameter-intensive ASMs. Third, we present GC × GC models that are based on the retention times of the nonpolar analytes on the comprehensive two-dimensional gas chromatography (GC × GC), which successfully described the SIT variance (R2=0.959-0.996) and depicted a strong predictive power (RMSE = 0.359-0.660 log unit) for an independent set of nonpolar analytes. Taken together, PMs allow easy SIT screening of organic chemicals compared to ASMs. Unlike ASMs, our GC × GC models can be applied to estimate SIT of complex nonpolar mixtures.
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Affiliation(s)
- Ahmad Aakash
- Institute of Environmental Science and Engineering (IESE), School of Civil and Environmental Engineering (SCEE), National University of Sciences and Technology (NUST), H-12, Islamabad, Pakistan; Environment and Agriculture Laboratory, School of Interdisciplinary Engineering & Sciences (SINES), National University of Sciences and Technology (NUST), H-12, Islamabad, Pakistan
| | - Deedar Nabi
- Institute of Environmental Science and Engineering (IESE), School of Civil and Environmental Engineering (SCEE), National University of Sciences and Technology (NUST), H-12, Islamabad, Pakistan; Environment and Agriculture Laboratory, School of Interdisciplinary Engineering & Sciences (SINES), National University of Sciences and Technology (NUST), H-12, Islamabad, Pakistan.
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Zushi Y. Direct Prediction of Physicochemical Properties and Toxicities of Chemicals from Analytical Descriptors by GC-MS. Anal Chem 2022; 94:9149-9157. [PMID: 35700270 PMCID: PMC9246259 DOI: 10.1021/acs.analchem.2c01667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
![]()
With advances in
machine learning (ML) techniques, the quantitative
structure–activity relationship (QSAR) approach is becoming
popular for evaluating chemicals. However, the QSAR approach requires
that the chemical structure of the target compound is known and that
it should be convertible to molecular descriptors. These requirements
lead to limitations in predicting the properties and toxicities of
chemicals distributed in the environment as in the PubChem database;
the structural information on only 14% of compounds is available.
This study proposes a new ML-based QSAR approach that can predict
the properties and toxicities of compounds using analytical descriptors
of mass spectrum and retention index obtained via gas chromatography–mass
spectrometry without requiring exact structural information. The model
was developed based on the XGBoost ML method. The root-mean-square
errors (RMSEs) for log Ko-w, log (molecular weight), melting point,
boiling point, log (vapor pressure), log (water solubility), log (LD50) (rat, oral), and log (LD50) (mouse, oral) are
0.97, 0.052, 51, 23, 0.74, 1.1, 0.74, and 0.6, respectively. The model
performed well on a chemical standard mixture measurement, with similar
results to those of model validation. It also performed well on a
measurement of contaminated oil with spectral deconvolution. These
results indicate that the model is suitable for investigating unknown-structured
chemicals detected in measurements. Any online user can execute the
model through a web application named Detective-QSAR (http://www.mixture-platform.net/Detective_QSAR_Med_Open/). The analytical descriptor-based approach is expected to create
new opportunities for the evaluation of unknown chemicals around us.
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Affiliation(s)
- Yasuyuki Zushi
- Research Institute of Science for Safety and Sustainability, National Institute of Advanced Industrial Science and Technology, 16-1 Onogawa, Tsukuba, Ibaraki 305-8506, Japan.,Graduate School of Science and Technology, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8577, Japan
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Investigation of partition coefficients and fingerprints of atmospheric gas- and particle-phase intermediate volatility and semi-volatile organic compounds using pixel-based approaches. J Chromatogr A 2022; 1665:462808. [PMID: 35032735 DOI: 10.1016/j.chroma.2022.462808] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2021] [Revised: 01/05/2022] [Accepted: 01/05/2022] [Indexed: 11/21/2022]
Abstract
Ambient gas- and particle-phase intermediate volatility and semi-volatile organic compounds (I/SVOCs) of Beijing were analyzed by a thermal desorption comprehensive two-dimensional gas chromatography quadrupole mass spectrometry (TD-GC × GC-qMS). A pixel-based scheme combing the integration-based approach was applied for partition coefficients estimation and fingerprints identification. Blob-by-blob recognition was firstly utilized to characterize I/SVOCs from the molecular level. 412 blobs in gas-phase and 460 blobs in particle-phase were resolved, covering a total response of 47.5% and 43.5%. A large pool of I/SVOCs was found with a large diversity of chemical classes in both gas- and particle-phase. Acids (8.5%), b-alkanes (5.8%), n-alkanes (C8-C25, 5.3%), and aromatics (4.4%) were dominant in gas-phase while esters (7.0%, including volatile chemical product compounds, VCPs), n-alkanes (C9-C34, 5.7%), acids (4.6%), and siloxanes (3.6%) were abundant in particle-phase. Air pollutants were then evaluated by a two-parameter linear free energy relationship (LFER) model, which could be further implemented in the two-dimensional volatility basis set (2D-VBS) model. Multiway principal component analysis (MPCA) and partial least squares-discriminant analysis (PLS-DA) implied that naphthalenes, phenol, propyl-benzene isomers, and oxygenated volatile organic compounds (OVOCs) were key components in the gas-phase under different pollution levels. This work gives more insight into property estimation and fingerprints identification for complex ambient samples.
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Development and evaluation of two-parameter linear free energy models for the prediction of human skin permeability coefficient of neutral organic chemicals. J Cheminform 2021; 13:25. [PMID: 33741067 PMCID: PMC7980659 DOI: 10.1186/s13321-021-00503-5] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2020] [Accepted: 03/10/2021] [Indexed: 01/13/2023] Open
Abstract
The experimental values of skin permeability coefficients, required for dermal exposure assessment, are not readily available for many chemicals. The existing estimation approaches are either less accurate or require many parameters that are not readily available. Furthermore, current estimation methods are not easy to apply to complex environmental mixtures. We present two models to estimate the skin permeability coefficients of neutral organic chemicals. The first model, referred to here as the 2-parameter partitioning model (PPM), exploits a linear free energy relationship (LFER) of skin permeability coefficient with a linear combination of partition coefficients for octanol–water and air–water systems. The second model is based on the retention time information of nonpolar analytes on comprehensive two-dimensional gas chromatography (GC × GC). The PPM successfully explained variability in the skin permeability data (n = 175) with R2 = 0.82 and root mean square error (RMSE) = 0.47 log unit. In comparison, the US-EPA’s model DERMWIN™ exhibited an RMSE of 0.78 log unit. The Zhang model—a 5-parameter LFER equation based on experimental Abraham solute descriptors (ASDs)—performed slightly better with an RMSE value of 0.44 log unit. However, the Zhang model is limited by the scarcity of experimental ASDs. The GC × GC model successfully explained the variance in skin permeability data of nonpolar chemicals (n = 79) with R2 = 0.90 and RMSE = 0.23 log unit. The PPM can easily be implemented in US-EPA’s Estimation Program Interface Suite (EPI Suite™). The GC × GC model can be applied to the complex mixtures of nonpolar chemicals. ![]()
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Boegelsack N, Sandau C, McMartin DW, Withey JM, O'Sullivan G. Development of retention time indices for comprehensive multidimensional gas chromatography and application to ignitable liquid residue mapping in wildfire investigations. J Chromatogr A 2020; 1635:461717. [PMID: 33254004 DOI: 10.1016/j.chroma.2020.461717] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Revised: 11/07/2020] [Accepted: 11/09/2020] [Indexed: 01/07/2023]
Abstract
In this study, we introduce a simple three-step workflow for a universally applicable RI system, to be used in GC×GC analysis of ignitable liquid residue (ILR) for arson investigations. The proposed RI system applies a combination of two well-established GC RI systems: non-isothermal Kovats (K) index in the first dimension and Lee (L) index in the second dimension. The proposed KLI RI system showed very good correlations when compared with predicted values and existing RI systems (r2 = 0.97 in first dimension, r2 = 0.99 in second dimension) and was valid for a wide range of analyte concentrations and operational settings (coefficient of variance (CV) < 1% in first dimension, < 10% in second dimension). Using the KLI RI, an ILR classification contour map was created to assist with the identification of ILR types within ASTM E1618. The contour map was successfully applied to neat fuels and a fire scene sample, highlighting the application to wildfire investigation. Standardizing the RI process and establishing acceptable error margins allows the exploration and comparison of comprehensive data generated from GC×GC analysis of ILRs regardless of location, time, or system, further enhancing comprehensive and tenable chemometric analyses of samples. Overall, the KLI workflow was inexpensive, quick to apply, and user-friendly with its simple 3-step design.
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Affiliation(s)
- Nadin Boegelsack
- Department of Earth and Environmental Sciences, Mount Royal University, 4825 Mount Royal Gate SW, Calgary, AB Canada, T3E 6K6; Department of Civil, Geological and Environmental Engineering, University of Saskatchewan, 57 Campus Drive, Saskatoon, SK Canada, S7N 5A9.
| | - Court Sandau
- Department of Earth and Environmental Sciences, Mount Royal University, 4825 Mount Royal Gate SW, Calgary, AB Canada, T3E 6K6; Chemistry Matters Inc., 104-1240 Kensington Rd NW Suite 405, Calgary, AB Canada, T2N 3P7
| | - Dena W McMartin
- Department of Civil, Geological and Environmental Engineering, University of Saskatchewan, 57 Campus Drive, Saskatoon, SK Canada, S7N 5A9
| | - Jonathan M Withey
- Department of Chemistry and Physics, Mount Royal University, 4825 Mount Royal Gate SW, Calgary, AB Canada, T3E 6K6
| | - Gwen O'Sullivan
- Department of Earth and Environmental Sciences, Mount Royal University, 4825 Mount Royal Gate SW, Calgary, AB Canada, T3E 6K6
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Zushi Y, Hanari N, Nabi D, Lin BL. Mixture Touch: A Web Platform for the Evaluation of Complex Chemical Mixtures. ACS OMEGA 2020; 5:8121-8126. [PMID: 32309721 PMCID: PMC7161061 DOI: 10.1021/acsomega.0c00340] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/24/2020] [Accepted: 03/12/2020] [Indexed: 06/11/2023]
Abstract
Risk assessment of chemical mixtures isRisk assessment of chemical mixtures is challenging because information about the chemical structure, concentration, properties, and toxicity, down to the individual compounds, is generally not readily accessible. To cope with this challenge, we think Mixture Touch- a web platform that offers a one-window solution, for free, for the risk assessment of complex mixtures that are analyzed with comprehensive two-dimensional gas chromatography (GC × GC). GC × GC is a powerful analytical technique for target and nontarget analysis of complex mixtures. Our web platform allows users to visualize the GC × GC data, conduct spectral identification, estimate properties, and analyze potential risks based on established methods. For illustration purpose, we show how to assess the aquatic bioaccumulation potential of short-chain chlorinated paraffin (SCCP), which is an industrially manufactured mixture. The platform readily demonstrated that most of the SCCP congeners did not have the tendency to accumulate in aquatic organisms but in humans. The platform can bridge the gap between the GC × GC experts, GC × GC users, analytical experts, and risk assessors. It could enhance the level of risk assessments of mixtures utilizing the high performance of the state-of-the-art analytical instruments.
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Affiliation(s)
- Yasuyuki Zushi
- Research
Institute of Science for Safety and Sustainability, National Institute of Advanced Industrial Science and Technology
(AIST), 16-1 Onogawa, Tsukuba, Ibaraki 305-8569, Japan
| | - Nobuyasu Hanari
- Research
Institute for Material and Chemical Measurement, National Metrology Institute of Japan, National Institute of Advanced
Industrial Science and Technology (AIST), 1-1-1 Umezono, Tsukuba, Ibaraki 305-8563, Japan
| | - Deedar Nabi
- Institute
of Environmental Sciences and Engineering, National University of Sciences and Technology, H-12, Islamabad 44000, Pakistan
- College
of Health Sciences, Jumeira University, Latifa Bint Hamdan Street, P.O.Box: 555532, Dubai United Arab Emirates
| | - Bin-Le Lin
- Research
Institute of Science for Safety and Sustainability, National Institute of Advanced Industrial Science and Technology
(AIST), 16-1 Onogawa, Tsukuba, Ibaraki 305-8569, Japan
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